High Performance Computing Applications
Abstract High Performance Computing HPC is required for many important applications in chemistry, computational fluid dynamics, etc., see, e.g., an overview in [1]. In this paper we shortly describe an application a multiscale material design problem ...
Sensitivity Study of Different RegCM4.4 Model Set-Ups - Recent Results from the TVRegCM Experiment
Abstract The oncoming climate changes will exert influence on the ecosystems, on all branches of the international economy, and on the quality of life. Global Circulation Models GCMs are the most widespread and successful tools employed for both ...
On the Monte Carlo Matrix Computations on Intel MIC Architecture
Abstract The tightened energy requirements when designing state-of-the-art high performance computing systems lead to the increased use of computational accelerators. Intel introduced the Many Integrated Core MIC architecture for their line of ...
Comparison of RNA-Seq Differential Expression Methods
Abstract There are many methods designed to find differentially expressed genes using RNA-seq data. Their outputs differ a lot, some genes are determined to be differentially expressed by most or all methods, and others - by very few or even by just one ...
On the Performance and Energy Consumption of Molecular Dynamics Applications for Heterogeneous CPU-GPU Platforms Based on Gromacs
Abstract High Performance Computing HPC accelerates life science discoveries by enabling scientists to analyze large data sets, to develop detailed models of entire biological systems and to simulate complex biological processes. As computational ...
Tools and Services for High Performance Computing
Abstract The accounting platform is a web-service based system for collection and analysis of accounting data from different infrastructure resources like High Performance Computing HPC, Cloud and storage systems. The platform has two major components - ...
Cloud Service for Numerical Calculations and Visualizations of Photonic Dissipative Systems
Abstract Nowadays quantum physics is crucial for several scientific applications, where it is no longer possible to neglect the environmental interaction, like dissipation and decoherence. In these cases, the quantum systems are usually treated as open ...
On the Use of Large Intel Xeon Phi Clusters for GEANT4-Based Simulations
Abstract GEANT4 is the basic software for fast and precise simulation of particle interactions with matter. Along the way towards enabling the execution of GEANT4 based simulations on hybrid High Performance Computing HPC architectures with large ...