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- research-article
Anton 3: twenty microseconds of molecular dynamics simulation before lunch
- David E. Shaw,
- Peter J. Adams,
- Asaph Azaria,
- Joseph A. Bank,
- Brannon Batson,
- Alistair Bell,
- Michael Bergdorf,
- Jhanvi Bhatt,
- J. Adam Butts,
- Timothy Correia,
- Robert M. Dirks,
- Ron O. Dror,
- Michael P. Eastwood,
- Bruce Edwards,
- Amos Even,
- Peter Feldmann,
- Michael Fenn,
- Christopher H. Fenton,
- Anthony Forte,
- Joseph Gagliardo,
- Gennette Gill,
- Maria Gorlatova,
- Brian Greskamp,
- J.P. Grossman,
- Justin Gullingsrud,
- Anissa Harper,
- William Hasenplaugh,
- Mark Heily,
- Benjamin Colin Heshmat,
- Jeremy Hunt,
- Douglas J. Ierardi,
- Lev Iserovich,
- Bryan L. Jackson,
- Nick P. Johnson,
- Mollie M. Kirk,
- John L. Klepeis,
- Jeffrey S. Kuskin,
- Kenneth M. Mackenzie,
- Roy J. Mader,
- Richard McGowen,
- Adam McLaughlin,
- Mark A. Moraes,
- Mohamed H. Nasr,
- Lawrence J. Nociolo,
- Lief O'Donnell,
- Andrew Parker,
- Jon L. Peticolas,
- Goran Pocina,
- Cristian Predescu,
- Terry Quan,
- John K. Salmon,
- Carl Schwink,
- Keun Sup Shim,
- Naseer Siddique,
- Jochen Spengler,
- Tamas Szalay,
- Raymond Tabladillo,
- Reinhard Tartler,
- Andrew G. Taube,
- Michael Theobald,
- Brian Towles,
- William Vick,
- Stanley C. Wang,
- Michael Wazlowski,
- Madeleine J. Weingarten,
- John M. Williams,
- Kevin A. Yuh
SC '21: Proceedings of the International Conference for High Performance Computing, Networking, Storage and Analysis•November 2021, Article No.: 1, pp 1-11• https://doi.org/10.1145/3458817.3487397Anton 3 is the newest member in a family of supercomputers specially designed for atomic-level simulation of molecules relevant to biology (e.g., DNA, proteins, and drug molecules). Anton 3 achieves order-of-magnitude improvements in time-to-solution ...
- Article
Filtering, Reductions and Synchronization in the Anton 2 Network
IPDPS '15: Proceedings of the 2015 IEEE International Parallel and Distributed Processing Symposium•May 2015, pp 860-870• https://doi.org/10.1109/IPDPS.2015.42Parallel implementations of molecular dynamics (MD) simulation require significant inter-node communication, but off-chip communication bandwidth is not scaling as quickly as on-chip logic density. We present three network features targeting this problem ...
- research-article
Anton 2: raising the bar for performance and programmability in a special-purpose molecular dynamics supercomputer
- David E. Shaw,
- J. P. Grossman,
- Joseph A. Bank,
- Brannon Batson,
- J. Adam Butts,
- Jack C. Chao,
- Martin M. Deneroff,
- Ron O. Dror,
- Amos Even,
- Christopher H. Fenton,
- Anthony Forte,
- Joseph Gagliardo,
- Gennette Gill,
- Brian Greskamp,
- C. Richard Ho,
- Douglas J. Ierardi,
- Lev Iserovich,
- Jeffrey S. Kuskin,
- Richard H. Larson,
- Timothy Layman,
- Li-Siang Lee,
- Adam K. Lerer,
- Chester Li,
- Daniel Killebrew,
- Kenneth M. Mackenzie,
- Shark Yeuk-Hai Mok,
- Mark A. Moraes,
- Rolf Mueller,
- Lawrence J. Nociolo,
- Jon L. Peticolas,
- Terry Quan,
- Daniel Ramot,
- John K. Salmon,
- Daniele P. Scarpazza,
- U. Ben Schafer,
- Naseer Siddique,
- Christopher W. Snyder,
- Jochen Spengler,
- Ping Tak Peter Tang,
- Michael Theobald,
- Horia Toma,
- Brian Towles,
- Benjamin Vitale,
- Stanley C. Wang,
- Cliff Young
SC '14: Proceedings of the International Conference for High Performance Computing, Networking, Storage and Analysis•November 2014, pp 41-53• https://doi.org/10.1109/SC.2014.9Anton 2 is a second-generation special-purpose supercomputer for molecular dynamics simulations that achieves significant gains in performance, programmability, and capacity compared to its predecessor, Anton 1. The architecture of Anton 2 is tailored ...
- research-article
Unifying on-chip and inter-node switching within the Anton 2 network
ISCA '14: Proceeding of the 41st annual international symposium on Computer architecuture•June 2014, pp 1-12The design of network architectures has become increasingly complex as the chips connected by inter-node networkshave emerged as distributed systems in their own right, complete with their own on-chip networks. In Anton 2, a massively parallel special-...
Also Published in:
ACM SIGARCH Computer Architecture News: Volume 42 Issue 3, June 2014