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Optimization of Nucleic Acid Detection Method under the New Epidemic Situation in Macao based on Experimental and Mathematical Statistics Analysis

Published: 22 December 2021 Publication History

Abstract

A large number of COVID-19 nucleic acid tests are performed every day in the world. If the testing is performed individually, the testing workload and testing cost would be high. In this paper, we proposed a simulated model to check the efficiency of group testing methods given four typical situations and find the best grouping number for different predicted infection rates. Maximum likelihood Estimation (MLE) is applied for model estimation and Inversion Method is used to generate pseudo random variables for simulation. The simulation results point to the conclusions: (1) Given a high infection rate (p>0.1), both the false-positive and the false-negative possibilities have a poor relation with the grouping number. (2) However, given a low infection rate (p<0.1), the false-positive and false-negative possibilities will become important factors to reduce the grouping number. Especially, if p is close to 0.01, the grouping number is significantly affected. (3) With a 10% infection rate, it is recommended to group 5 participants in one test given no false-positive or false-negative situations. (4) If p<0.3, the group testing approach has the potential to improve overall testing efficiency.

References

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Our World in Data. (2021, May 16). Daily COVID-19 tests per thousand people, May14, 2021. https://ourworldindata.org/grapher/daily-tests-per-thousand-people-smoothed-7-day
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ZHAO Bing & QUI Qi-rong. (2020). Detection grouping method based on minimum relative testing quantity for outbreak epidemic situation and public health events. Hospital of North China Electric Power University, 34: 816--822.
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DING ZHOU DU & F. K. HWANG. (2020). Minimising a combinatorial function. Institute of Applied Mathematics, Academy of Science, Beijing, China, 3: 523--528
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Gavi The Vaccine Alliance. (2020) 5 reasons why pandemics like COVID-19 are becoming more likely. https://www.gavi.org/vaccineswork/5-reasons-why-pandemics-like-covid-19-are-becoming-more-likely
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Ezekiel J. Emanuel, M.D. et al. (2020). Fair Allocation of Scarce Medical Resources in the Time of COVID-19. The New England Journal of Medicine, 382: 2049--2055
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Yan Jiaying et al. (2020) Novel COVID-19 Detection Reagents. Infection Control Journal, 30: 306--312
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Zhao Mei Hui and Wang Zhiwen (2021) Discussion on the Grouping Scheme of Multiple Rounds of Detection and Dichotomy for the Prevention of Infectious Diseases. Scientific Consult, 10: 55--56
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Marco Chiani, Gianluigi Liva, and Enrico Paolini (2021). Identification-Detection Group Testing Protocols for COVID-19 at High Prevalence. Cornell University. Physics and Society. Populations and Evolution. arXiv:2104.11305
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Robert Dorfman (1943) The Detection of Defective Members of Large Populations. The Annals of Mathematical Statistics, 14: 436--440

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  1. Optimization of Nucleic Acid Detection Method under the New Epidemic Situation in Macao based on Experimental and Mathematical Statistics Analysis

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    ISAIMS '21: Proceedings of the 2nd International Symposium on Artificial Intelligence for Medicine Sciences
    October 2021
    593 pages
    ISBN:9781450395588
    DOI:10.1145/3500931
    Permission to make digital or hard copies of all or part of this work for personal or classroom use is granted without fee provided that copies are not made or distributed for profit or commercial advantage and that copies bear this notice and the full citation on the first page. Copyrights for components of this work owned by others than ACM must be honored. Abstracting with credit is permitted. To copy otherwise, or republish, to post on servers or to redistribute to lists, requires prior specific permission and/or a fee. Request permissions from [email protected]

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    Association for Computing Machinery

    New York, NY, United States

    Publication History

    Published: 22 December 2021

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    Author Tags

    1. COVID-19 Detections
    2. Detection grouping method
    3. Group Testing
    4. Optimisation

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    Overall Acceptance Rate 53 of 112 submissions, 47%

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