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DataONE member node pilot integration with TeraGrid?

Published: 18 July 2011 Publication History

Abstract

The NSF DataONE [1] DataNet project and the NSF Tera-Grid [2] project have initiated a pilot collaboration to deploy and operate the DataONE Member Node software stack on TeraGrid infrastructure. The appealing feature of this collaboration is that it opens up the possibility to add large scale computing as an adjunct to DataONE data, metadata, and workflow manipulation and analysis tools. Additionally, DataONE data archive and curation services are exposed as an option for large scale computing and storage efforts such as TeraGrid/XSEDE. With this joint effort, DataONE also brings an open, persistent, robust, and secure method for accessing Earth sciences data collected by science communities such as The National Evolutionary Synthesis Center's Dryad [3], The Ecological Society of America's Ecological Archive [4], NASA's Distributed Active Archive Center at the Oak Ridge National Laboratory [5], the USGS's National Biological Information Infrastructure [6], the Fire Research & Management Exchange System [7], the Long Term Ecological Research Network [8], and the Knowledge Network for Biocomplexity [9].
Beginning with an April 1st, 2011, allocation, the DataONE Core Cyberinfrastructure Team has been working with the IU Quarry [10] virtual hosting service, and more generally with the TeraGrid data area, on this pilot implementation. The implementation includes multiple virtual servers in order to test different reference implementations of the common DataONE Member Node RESTful web-service functions [11]. These implementations include implementation as a Metacat server [12], as well as a Python Generic Member Node developed by DataONE [13]. The implementations will also mount TeraGrid-wide global storage services (DC-WAN [14] and Albedo [15]) and thus allow integration of input and output of large scale computational runs with wide area archival data and metadata services.

References

[1]
DataONE, http://www.dataone.org/about
[2]
TeraGrid, https://www.teragrid.org/web/about/
[3]
Dryad - The National Evolutionary Synthesis Center, http://www.datadryad.org/
[4]
The Ecological Society of America's Ecological Archive, http://www.esapubs.org/archive/
[5]
The National Aeronautics and Space Administration's Distributed Active Archive Center, http://daac.gsfc.nasa.gov/
[6]
The United States Geological Survey's National Biological Information Infrastructure, http://www.nbii.gov/
[7]
The United States Geological Survey's Fire Research and Management Exchange System, http://frames.nbii.gov/
[8]
The United States Long Term Ecological Research Network, http://www.lternet.edu/
[9]
The Knowledge Network for Biocomplexity, http://knb.ecoinformatics.org/index.jsp
[10]
Quarry | Cyberinfrastructure | Indiana University Pervasive Technology Institute, http://rc.uits.indiana.edu/ci/systems/quarry
[11]
Fielding, R. T. and Taylor, R. N. 2002. Principled design of the modern Web architecture. ACM Trans. Internet Technol. 2, 2 (May. 2002), 115--150. DOI=http://doi.acm.org/10.1145/514183.514185.
[12]
Metacat: Metadata and Data Management Server, http://knb.ecoinformatics.org/software/metacat/
[13]
Components of the DataONE Infrastructure, http://mule1.dataone.org/ArchitectureDocs-current/implementation/components.html
[14]
Data Capacitor | Indiana University Pervasive Technology Institute, http://pti.iu.edu/dc
[15]
Wide area data resources on the TeraGrid - Albedo, http://kb.iu.edu/data/bauy.html#albedo
[16]
DataONE Investigator Toolkit Overview http://mule1.dataone.org/ArchitectureDocs-current/design/itk-overview.html
[17]
KNB Data:: Morpho Data Management Software http://knb.ecoinformatics.org/morphoportal.jsp
[18]
Filesystem in Userspace (FUSE) http://fuse.sourceforge.net/
[19]
Kepler https://kepler-project.org/
[20]
VisTrails http://www.vistrails.org/index.php/Main_Page
[21]
Cornell Lab of Ornithology, http://www.birds.cornell.edu/
[22]
The State of the Birds Report, http://www.stateofthebirds.org/

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TG '11: Proceedings of the 2011 TeraGrid Conference: Extreme Digital Discovery
July 2011
256 pages
ISBN:9781450308885
DOI:10.1145/2016741

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  • University of Illinois: University of Illinois

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Association for Computing Machinery

New York, NY, United States

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Published: 18 July 2011

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TG'11
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  • University of Illinois
TG'11: TeraGrid 2011
July 18 - 21, 2011
Utah, Salt Lake City

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