[go: up one dir, main page]
More Web Proxy on the site http://driver.im/ skip to main content
10.1145/1645953.1646027acmconferencesArticle/Chapter ViewAbstractPublication PagescikmConference Proceedingsconference-collections
research-article

Graph classification based on pattern co-occurrence

Published: 02 November 2009 Publication History

Abstract

Subgraph patterns are widely used in graph classification, but their effectiveness is often hampered by large number of patterns or lack of discrimination power among individual patterns. We introduce a novel classification method based on pattern co-occurrence to derive graph classification rules. Our method employs a pattern exploration order such that the complementary discriminative patterns are examined first. Patterns are grouped into co-occurrence rules during the pattern exploration, leading to an integrated process of pattern mining and classifier learning. By taking advantage of co-occurrence information, our method can generate strong features by assembling weak features. Unlike previous methods that invoke the pattern mining process repeatedly, our method only performs pattern mining once. In addition, our method produces a more interpretable classifier and shows better or competitive classification effectiveness in terms of accuracy and execution time.

References

[1]
C. Borgelt and M.R. Berhold. Mining molecular fragments: Finding relevant substructures of molecules. In ICDM'02.
[2]
D. Bandyopadhyay, J. Huan, J. Liu, J. Prins, J. Snoeyink, W.Wang, and A. Tropsha. Structure-based function inference using protein family-specific fingerprints, Protein Science, vol. 15, pp. 1537--1543, 2006.
[3]
D. Bandyopadhyay and J. Snoeyink. "Almost Delaunay Simplices: Nearest Neighbor Relations for Imprecise Points". ACM-SIAM Symposium On Discrete Algorithms (SODA 2004), New Orleans, Jan 11--13, 2004, pages 403--412.
[4]
L. Breiman. "Random Forests". Machine Learning 45 (1): 5--32, 2001.
[5]
C. Chang and C. Lin. LIBSVM: a library for support vector machines, 2001. Software available at: http://www.csie.ntu.edu.tw/~cjlin/libsvm/
[6]
C. Chen, C. X. Lin, X. Yan, and J. Han, On Effective Presentation of Graph Patterns: A Structural Representative Approach, in Proc. 2008 ACM Conf. on Information and Knowledge Management (CIKM'08), Napa Valley, CA, Oct. 2008.
[7]
M. Deshpande, M. Kuramochi, N. Wale, and G. Karypis. Frequent Sub-structure Based Approaches for Classifying Chemical Compounds. IEEE Trans. Knowl. Data Eng. 17(8): 1036--1050, 2005.
[8]
R. Goldman and J. Widom. Dataguides: Enabling query formulation and optimization in semistructured databases. In VLDB'97.
[9]
C. Helma, T. Cramer, S. Kramer, and L.D. Raedt. Data mining and machine learning techniques for the identification of mutagenicity inducing substructures and structure activity relationships of noncongeneric compounds. J. Chem. Inf. Comput. Sci., 44:1402--1411, 2004.
[10]
J. Huan, W. Wang, D. Bandyopadhyay, J. Snoeyink, J. Prins, and A. Tropsha. Mining spatial motifs from protein structure graphs, Proceedings of the 8th Annual International Conference on Research in Computational Molecular Biology (RECOMB), pp. 308--315, 2004.
[11]
J. Huan, W. Wang, and J. Prins. Efficient mining of frequent subgraph in the presence of isomorphism, Proceedings of the 3rd IEEE International Conference on Data Mining (ICDM), pp. 549--552, 2003.
[12]
A. Inokuchi, T. Washio, and H. Motoda. An apriori-based algorithm for mining frequent substructures from graph data. In Proc. of 2000 European Symp. Principle of Data Mining and Knowledge Discovery, pages 13--23, 2000.
[13]
M. Kuramochi and G. Karypis. Frequent subgraph discovery. In Proc. of ICDM, pages 313--320, 2001.
[14]
T. Kudo, E. Maeda, and Y. Matsumoto. An application of boosting to graph classification. In Advances in Neural Information Processing Systems 17, pages 729--736. MIT Press, 2005.
[15]
J. Kazius, S. Nijssen, J. Kok, and T. Back A.P. Ijzerman. Substructure mining using elaborate chemical representation. J. Chem. Inf. Model., 46:597--605, 2006.
[16]
S. Nowozin, K. Tsuda, T. Uno, T. Kudo, and G. Bakir. Weighted substructure mining for image analysis. In IEEE Computer Society Conference on Computer Vision and Pattern Recognition (CVPR), IEEE Computer Society, 2007.
[17]
S. Raghavan and H. Garcia-Molina, Representing web graphs. In Proceedings of the IEEE Intl. Conference on Data Engineering, 2003.
[18]
H. Saigo, T. Kadowaki, and K. Tsuda. A linear programming approach for molecular QSAR analysis. In International Workshop on Mining and Learning with Graphs (MLG), pages 85--96, 2006.
[19]
H. Saigo, N. Kraemer and K. Tsuda: Partial Least Squares Regression for Graph Mining, In Proceedings of the 14th ACM SIGKDD International Conference on Knowledge Discovery and Data Mining (KDD2008), 578--586, 2008.
[20]
M. Thoma, H. Cheng, A. Gretton, J. Han, H. Kriegel, A. Smola, L. Song, P. Yu, X. Yan, K. Borgwardt. "Near-optimal supervised feature selection among frequent subgraphs", In SDM 2009, Sparks, Nevada, USA.
[21]
V. Vapnik. The Nature of Statistical Learning Theory. Springer-Verlag, 1995.
[22]
X. Yan, H. Cheng, J. Han, and P. S. Yu. Mining significant graph patterns by leap search. In Proceedings of the ACM SIGMOD International Conference on Management of Data, pages 433--444, 2008.
[23]
X. Yan and J. Han. gSpan: graph--based substructure pattern mining. In Proceedings of the 2002 IEEE International Conference on Data Mining, pages 721--724. IEEE Computer Society, 2002.
[24]
F. Zhu, X. Yan, J. Han, and P. S. Yu, gPrune: A Constraint Pushing Framework for Graph Pattern Mining, in Proc. 2007 Pacific-Asia Conf. on Knowledge Discovery and Data Mining (PAKDD'07), Nanjing, China, May 2007.

Cited By

View all
  • (2023)CLIG: A classification method based on bidirectional layer information granularityInformation Sciences10.1016/j.ins.2023.119662(119662)Online publication date: Sep-2023
  • (2022)Bipartite graph capsule networkWorld Wide Web10.1007/s11280-022-01009-226:1(421-440)Online publication date: 14-Feb-2022
  • (2021)dSubSign: Classification of Instance-Feature Data Using Discriminative Subgraphs as Class SignaturesInternational Journal of Software Engineering and Knowledge Engineering10.1142/S021819402150028531:07(917-947)Online publication date: 23-Jul-2021
  • Show More Cited By

Recommendations

Comments

Please enable JavaScript to view thecomments powered by Disqus.

Information & Contributors

Information

Published In

cover image ACM Conferences
CIKM '09: Proceedings of the 18th ACM conference on Information and knowledge management
November 2009
2162 pages
ISBN:9781605585123
DOI:10.1145/1645953
Permission to make digital or hard copies of all or part of this work for personal or classroom use is granted without fee provided that copies are not made or distributed for profit or commercial advantage and that copies bear this notice and the full citation on the first page. Copyrights for components of this work owned by others than ACM must be honored. Abstracting with credit is permitted. To copy otherwise, or republish, to post on servers or to redistribute to lists, requires prior specific permission and/or a fee. Request permissions from [email protected]

Sponsors

Publisher

Association for Computing Machinery

New York, NY, United States

Publication History

Published: 02 November 2009

Permissions

Request permissions for this article.

Check for updates

Author Tags

  1. classification rule
  2. graph classification
  3. graph mining

Qualifiers

  • Research-article

Conference

CIKM '09
Sponsor:

Acceptance Rates

Overall Acceptance Rate 1,861 of 8,427 submissions, 22%

Upcoming Conference

CIKM '25

Contributors

Other Metrics

Bibliometrics & Citations

Bibliometrics

Article Metrics

  • Downloads (Last 12 months)33
  • Downloads (Last 6 weeks)1
Reflects downloads up to 13 Dec 2024

Other Metrics

Citations

Cited By

View all
  • (2023)CLIG: A classification method based on bidirectional layer information granularityInformation Sciences10.1016/j.ins.2023.119662(119662)Online publication date: Sep-2023
  • (2022)Bipartite graph capsule networkWorld Wide Web10.1007/s11280-022-01009-226:1(421-440)Online publication date: 14-Feb-2022
  • (2021)dSubSign: Classification of Instance-Feature Data Using Discriminative Subgraphs as Class SignaturesInternational Journal of Software Engineering and Knowledge Engineering10.1142/S021819402150028531:07(917-947)Online publication date: 23-Jul-2021
  • (2021)Heuristic extraction of co-occurrence patterns for effective construction of graph-based interpretable decision sets2021 Ninth International Symposium on Computing and Networking Workshops (CANDARW)10.1109/CANDARW53999.2021.00033(159-165)Online publication date: Nov-2021
  • (2020)Data-Driven Template Discovery Using Graph Convolutional Neural Networks2020 IEEE International Conference on Big Data (Big Data)10.1109/BigData50022.2020.9378318(2534-2538)Online publication date: 10-Dec-2020
  • (2020)A novel classifier for multivariate instance using graph class signaturesFrontiers of Computer Science10.1007/s11704-019-8263-514:4Online publication date: 3-Jan-2020
  • (2019)Summarizing significant subgraphs by probabilistic logic programmingIntelligent Data Analysis10.3233/IDA-18433923:6(1299-1312)Online publication date: 8-Nov-2019
  • (2019)Efficiently Mining Recurrent Substructures from Protein Three-Dimensional Structure GraphsJournal of Computational Biology10.1089/cmb.2018.017126:6(561-571)Online publication date: Jun-2019
  • (2018)An efficient heuristic approach for learning a set of composite graph classification rulesIntelligent Data Analysis10.3233/IDA-16334322:3(581-596)Online publication date: 9-May-2018
  • (2018)Separating Terrorist-Like Topological Signatures Embedded in Benign NetworksMILCOM 2018 - 2018 IEEE Military Communications Conference (MILCOM)10.1109/MILCOM.2018.8599854(1-9)Online publication date: Oct-2018
  • Show More Cited By

View Options

Login options

View options

PDF

View or Download as a PDF file.

PDF

eReader

View online with eReader.

eReader

Media

Figures

Other

Tables

Share

Share

Share this Publication link

Share on social media