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Evolutionary trace report_maker: a new type of service for comparative analysis of proteins

Authors:

I. Mihalek,

I. Reš,

O. LichtargeAuthors Info & Claims

Bioinformatics, Volume 22, Issue 13

Pages 1656 - 1657

https://doi.org/10.1093/bioinformatics/btl157

Published: 01 July 2006 Publication History

Abstract

Summary: Evolutionary trace report_maker offers a new type of service for researchers investigating the function of novel proteins. It pools, from different sources, information about protein sequence, structure and elementary annotation, and to that background superimposes inference about the evolutionary behavior of individual residues, using real-valued evolutionary trace method. As its only input it takes a Protein Data Bank identifier or UniProt accession number, and returns a human-readable document in PDF format, supplemented by the original data needed to reproduce the results quoted in the report.

Availability: Evolutionary trace reports are freely available for academic users at http://mammoth.bcm.tmc.edu/report-maker

Contact: {imihalek,ires,lichtarge}@bcm.tmc.edu

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Farhoodi RAkbal-Delibas BHaspel NHaspel NCowen LShehu AKahveci TPozzi G(2017)Ranking Protein-Protein Binding Using Evolutionary Information and Machine LearningProceedings of the 8th ACM International Conference on Bioinformatics, Computational Biology,and Health Informatics10.1145/3107411.3107497(667-672)Online publication date: 20-Aug-2017
https://dl.acm.org/doi/10.1145/3107411.3107497
Akbal-Delibas BPomplun MHaspel NBaldi PWang W(2014)AccuRMSDProceedings of the 5th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics10.1145/2649387.2649392(289-296)Online publication date: 20-Sep-2014
https://dl.acm.org/doi/10.1145/2649387.2649392

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Evolutionary trace report_maker: a new type of service for comparative analysis of proteins

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Published In

Bioinformatics Volume 22, Issue 13

July 2006

132 pages

ISSN:1367-4803

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Oxford University Press, Inc.

United States

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Published: 01 July 2006

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Farhoodi RAkbal-Delibas BHaspel NHaspel NCowen LShehu AKahveci TPozzi G(2017)Ranking Protein-Protein Binding Using Evolutionary Information and Machine LearningProceedings of the 8th ACM International Conference on Bioinformatics, Computational Biology,and Health Informatics10.1145/3107411.3107497(667-672)Online publication date: 20-Aug-2017
https://dl.acm.org/doi/10.1145/3107411.3107497
Akbal-Delibas BPomplun MHaspel NBaldi PWang W(2014)AccuRMSDProceedings of the 5th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics10.1145/2649387.2649392(289-296)Online publication date: 20-Sep-2014
https://dl.acm.org/doi/10.1145/2649387.2649392

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Imprint of evolutionary conservation and protein structure variation on the binding function of protein tyrosine kinases

An evolutionary approach for molecular docking

System biology-based investigation of Silymarin to trace hepatoprotective effect

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