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Distinguishing string selection problems

Published: 01 January 1999 Publication History
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References

[1]
Alon, N., Spencer, J., and Erdds, P. (1992), "The Probabilistic Method," Wiley, New York.
[2]
Amaldi, E., and Kann, V. (1995), The complexity and approximabiIity of finding maximum feasible subsystems of linear relations, Theoret. Comput. Science 147, 1.81-210.
[3]
Arora, S., Lurid, C., Motwani, It., Sudan, M., and Szegedy, M. (1992), Proof verification and intractability of approximation problems, in FOCS 92, pp. 13-22.
[4]
Brown, T., Leonard, G. A., Booth, E. D., and Kneale, G. (1990), Influence of pH on the Conformation and Stability of Mismatch Base-pairs in DNA, J. Mol. Biol. 212, 437-440.
[5]
Ben-Dor, A., Lancia, G., Perone, J., and Ravi R. (1997), Banishing Bias from Consensus Sequences, in "Combinatorial Pattern Matching, 8th Annual Symposium," pp. 247-261.
[6]
Crooke, S., and Lebleu, B. (editors) (1993), "Antisense Research and Applications," CRC Press Inc, Boca Raton.
[7]
Dopazo, J., Rodriguez, A., S~iz, J. C., and Sobrino, F. (1993), Design of primers for PCR amplification of highly variable genomes, CABIOS 9, 123-125.
[8]
Fagin, R. (1974), Generalized first-order spectra and polynomial time recognizable sets, in #Complexity of Computation" (1%. Karp, Ed.), pp. 43-73, AMS, Providence.
[9]
Frances, M., and Litman, A. (1997) On Covering Problems of Codes, Theory of Computing Systems 30, 113-119.
[10]
Gamey, M., and Johnson, D. (1979), "Computers and Intractability: a guide to the theory of NP-completeness," W.H. Freeman, San Francisco.
[11]
G#sieniec, L., Jansson, J., and Lingas, A., (1999) Efficient Approximation Algorithms for the Hamming Center Problem, to appear in SODA'99.
[12]
Ito, M., Shimizu, K., Nakanishi, M., and Hashimoto, A. (1994), Polynomial-time algorithms for computing characteristic strings, in CPM'94, pp. 274-288.
[13]
Hillis, E. M., Moritz, C., and Mable, B. K. (1996), "Molecular Systematics," 2nd ed., Sinauer Associates Inc., Sunderland.
[14]
Jiang, T., Trendall, C., Wang, S., Wareham, T., and Zhang, X. (1998) Drug target identification using Gibbs sampling techniques, submitted for publication.
[15]
Lomant, A. J., and Fresco, J. R. (1975), S#ructural and Energetic Consequences of Noncomplementary Base Oppositions in Nucleic Acid Helices Nucleic Acid Res. and Mol. Bio. 15, 185-218.
[16]
Longfellow, C. E., Kierzek, It., and Ttu#er, D. H.(1990), Thermodynamic and Spectroscopic Study of Bulge Loops in Oligoribonucleotides, Biochemi# 29, 278-285.
[17]
Lucas, K., Busch, M., MSssinger, S., and Thompson, J. A. (1991), An improved microcomputer program for finding gene- or gene family-specific oligonucleotides suitable as primers for polymerase chain reactions or as probes, CABIOS Z, 525-529.
[18]
Macario, A., and Macazio, E. (1990), #Gene Probes for Bacteria," Academic Press, San Diego.
[19]
Mathews, C. K., and van Holde, K.E. (1990), #Biochemistry," Benjamin/Cummings Publishing Company, Inc., Redwood City.
[20]
Motwani, R., Naor, J., and Raghavan, P., (1995), Randomized Approximation Algorithms in Combinatorial Optimization Approzimation Algorithms for NP-Hard Problems (D. S. Hochbaum, Ed.), pp. 447-481, PWS Publishing Company, Boston.
[21]
Motwani, R., and Raghavan, P. (1995), #Randomized Algorithms," Cambridge University Press, Cambridge.
[22]
Papadimitriou, C. H., and Yannakakis, M. (1991), Optimization, approximation and complexity classes, JCSS 43, 425-440.
[23]
Proutski, V., and Holme, E. C. (1996), Primer Master: a new program for the design and analysis of PCR primers, CABIOS 12, 253-255.
[24]
Turner, D. H., Sugimoto, N., and Freier, S. M. (1988), RNA Structure Prediction, Ann. Rev. Biophys. Chem. 17, 167-192.
[25]
Wetmur, J. G. (1991), DNA Probes: Applications of the Principles of Nucleic Acid Hybridization, Critical Rev. in Biochem. and Mol. Bio. 26, 227-259.

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  • (2016)An efficient algorithm to detect common ancestor genes for non-overlapping inversion and applicationsTheoretical Computer Science10.1016/j.tcs.2016.03.006656:PB(188-214)Online publication date: 20-Dec-2016
  • (2015)Application of consensus string matching in the diagnosis of allelic heterogeneity involving transposition mutationInternational Journal of Data Mining and Bioinformatics10.1504/IJDMB.2015.07275613:4(360-377)Online publication date: 1-Oct-2015
  • (2014)The Selective Fixing Algorithm for the closest string problemComputers and Operations Research10.1016/j.cor.2013.07.01741(24-30)Online publication date: 1-Jan-2014
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cover image ACM Conferences
SODA '99: Proceedings of the tenth annual ACM-SIAM symposium on Discrete algorithms
January 1999
992 pages
ISBN:0898714346

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Society for Industrial and Applied Mathematics

United States

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Published: 01 January 1999

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SODA99: 1999 10th Conference on Discrete Algorithms
January 17 - 19, 1999
Maryland, Baltimore, USA

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Overall Acceptance Rate 411 of 1,322 submissions, 31%

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Cited By

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  • (2016)An efficient algorithm to detect common ancestor genes for non-overlapping inversion and applicationsTheoretical Computer Science10.1016/j.tcs.2016.03.006656:PB(188-214)Online publication date: 20-Dec-2016
  • (2015)Application of consensus string matching in the diagnosis of allelic heterogeneity involving transposition mutationInternational Journal of Data Mining and Bioinformatics10.1504/IJDMB.2015.07275613:4(360-377)Online publication date: 1-Oct-2015
  • (2014)The Selective Fixing Algorithm for the closest string problemComputers and Operations Research10.1016/j.cor.2013.07.01741(24-30)Online publication date: 1-Jan-2014
  • (2014)On the String Consensus Problem and the Manhattan Sequence Consensus ProblemProceedings of the 21st International Symposium on String Processing and Information Retrieval - Volume 879910.1007/978-3-319-11918-2_24(244-255)Online publication date: 20-Oct-2014
  • (2012)A GRASP algorithm for the Closest String Problem using a probability-based heuristicComputers and Operations Research10.1016/j.cor.2011.02.02539:2(238-248)Online publication date: 1-Feb-2012
  • (2012)An improved heuristic for the far from most strings problemJournal of Heuristics10.1007/s10732-011-9177-z18:2(239-262)Online publication date: 1-Apr-2012
  • (2011)Approximations and partial solutions for the consensus sequence problemProceedings of the 18th international conference on String processing and information retrieval10.5555/2051073.2051090(168-173)Online publication date: 17-Oct-2011
  • (2010)A three-string approach to the closest string problemProceedings of the 16th annual international conference on Computing and combinatorics10.5555/1886811.1886868(449-458)Online publication date: 19-Jul-2010
  • (2010)Finding optimal alignment and consensus of circular stringsProceedings of the 21st annual conference on Combinatorial pattern matching10.5555/1875737.1875765(310-322)Online publication date: 21-Jun-2010
  • (2009)Discovering Almost Any Hidden Motif from Multiple Sequences in Polynomial Time with Low Sample Complexity and High Success ProbabilityProceedings of the 6th Annual Conference on Theory and Applications of Models of Computation10.1007/978-3-642-02017-9_26(231-240)Online publication date: 12-May-2009
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