Use of a Multiplexed CMOS Microarray to Optimize and Compare Oligonucleotide Binding to DNA Probes Synthesized or Immobilized on Individual Electrodes
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<p><b>(A)</b> Fluorescence detection of target oligonucleotide binding to a complementary probe immobilized on Ppy deposited using constant current from 10 to 520 nA for 1.0 s. Different concentrations (0, 2, 20 or 200 pM) of target oligonucleotide were incubated in individual chambers of a four-chamber hyb cap, and binding was detected using Cy5-SA. <b>(B)</b> Same as (1A), but a 5′-aminated complementary probe was immobilized on the Ppy. (<b>C</b>) Same as (1A) but a 5′-thiolated complementary probe was immobilized on the Ppy. (<b>D</b>) Same as (1A) but a 5′-thiolated non-complementary probe was immobilized on the Ppy.</p> ">
<p><b>(A)</b> Electrochemical detection of target oligonucleotide binding to a complementary DNA probe immobilized on Ppy deposited using constant current from 10 to 260 nA for 1.0 s. Different concentrations (0.0, 0.2, 2.0 or 20.0 pM) of target oligonucleotide were incubated in individual chambers of a four-chamber hyb cap, and binding was detected using HRP-SA. <b>(B)</b> Same as (2A), but a 5′-aminated complementary probe was immobilized onto the Ppy. (<b>C</b>) Same as (2A) but a 5′-thiolated complementary probe was immobilized on the Ppy. (<b>D</b>) Same as (2A) but a 5′-thiolated non-complementary probe was immobilized on the Ppy.</p> ">
<p>Inhibition of hybridization signals by Ppy pretreatment with 1.0 M propanolamine, cysteine, or thioglycolic acid prior to immobilization of thiolated DNA. (<b>A</b>) Effect on ECD measured on electrodes with Ppy polymerized at 40 nA following hybridization with 20 pM 5′-biotinylated complementary oligonucleotide. (<b>B</b>) Effect on fluorescence detection, measured on electrodes with Ppy polymerized at 260 nA and hybridized with 200 pM of complementary oligonucleotides.</p> ">
<p><b>(A)</b> Fluorescence detection of target oligonucleotide binding to a complementary aminated DNA probe immobilized on Ppy deposited using constant current from 10 to 520 nA for 1.0 s. Different concentrations (0, 2, 20, or 200 pM) of 5′-biotinylated target oligonucleotide were incubated in individual chambers of a four-chamber hyb cap, and binding was detected using Cy5-SA. <b>(B)</b> Same as (3A), but a complementary DNA probe with a 5′-aminated T-linker was immobilized on the Ppy. (<b>C</b>) Same as (3A), but a non-complementary DNA probe with an aminated T-linker was immobilized on the Ppy.</p> ">
<p>Fluorescence detection of rehybridization by target oligonucleotide to probes on the microarray used in <a href="#f3-sensors-10-07371" class="html-fig">Figure 3</a> following stripping at 95 °C for 1 h. Different concentrations (0, 2, 20, or 200 pM) of biotinylated target oligonucleotide were incubated in individual chambers of a four-chamber hyb cap, and binding was detected using Cy5-SA. (<b>A</b>) Complementary 5′-aminated DNA probe immobilized on Ppy deposited using constant current from 10 to 520 nA for 1.0 s. <b>(B)</b> Same as (4A), but a complementary DNA probe with an 5′-aminated T-linker was immobilized on the Ppy. (<b>C</b>) Same as (4A), but a non-complementary DNA probe with a 5′-aminated T-linker was immobilized on the Ppy.</p> ">
<p>Effects on ECD of adding a 5′-aminated 20 T-linker to DNA probes and preheating the immobilized probes prior to hybridization. Polypyrrole was deposited at 30 nA, and 20 pM of biotinylated oligonucleotide was hybridized on the array. A second microarray was incubated in 2XPBST for 1 h at 95 °C and washed once in PBS prior to hybridization.</p> ">
<p>Concentration of target <span class="html-italic">versus</span> signal intensity plot for two microarrays containing complementary and non complementary DNA probes either synthesized (Syn) <span class="html-italic">in situ</span> or immobilized on polypyrrole (Ppy). The data illustrate results using a synthesized complementary DNA probe (Syn DNA), a synthesized complementary DNA probe with a 3′ 20 T-linker (Syn T DNA), a complementary 5′ aminated DNA probe on Ppy (Ppy Amine DNA), and a complementary DNA probe with a 5′ aminated T-linker (Ppy Amine T DNA). Microarrays were hybridized with 0, 2, or 20 pM of biotinylated oligonucleotide.</p> ">
<p>Illustration of the relationship between the Cy5 dye on the target oligonucleotide and the Pt or Ppy surface on the electrode for the DNA capture probes either synthesized <span class="html-italic">in situ</span> or immobilized using Ppy respectively.</p> ">
Abstract
:1. Introduction
2. Experimental Section
2.1. Reagents
2.2. Methods
3. Results and Discussion
4. Conclusions
Acknowledgments
References and Notes
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Maurer, K.; Yazvenko, N.; Wilmoth, J.; Cooper, J.; Lyon, W.; Danley, D. Use of a Multiplexed CMOS Microarray to Optimize and Compare Oligonucleotide Binding to DNA Probes Synthesized or Immobilized on Individual Electrodes. Sensors 2010, 10, 7371-7385. https://doi.org/10.3390/s100807371
Maurer K, Yazvenko N, Wilmoth J, Cooper J, Lyon W, Danley D. Use of a Multiplexed CMOS Microarray to Optimize and Compare Oligonucleotide Binding to DNA Probes Synthesized or Immobilized on Individual Electrodes. Sensors. 2010; 10(8):7371-7385. https://doi.org/10.3390/s100807371
Chicago/Turabian StyleMaurer, Karl, Nina Yazvenko, Jodi Wilmoth, John Cooper, Wanda Lyon, and David Danley. 2010. "Use of a Multiplexed CMOS Microarray to Optimize and Compare Oligonucleotide Binding to DNA Probes Synthesized or Immobilized on Individual Electrodes" Sensors 10, no. 8: 7371-7385. https://doi.org/10.3390/s100807371
APA StyleMaurer, K., Yazvenko, N., Wilmoth, J., Cooper, J., Lyon, W., & Danley, D. (2010). Use of a Multiplexed CMOS Microarray to Optimize and Compare Oligonucleotide Binding to DNA Probes Synthesized or Immobilized on Individual Electrodes. Sensors, 10(8), 7371-7385. https://doi.org/10.3390/s100807371