Analysis of Chlorophyll Concentration in Potato Crop by Coupling Continuous Wavelet Transform and Spectral Variable Optimization
"> Figure 1
<p>Location of the field and photos of potato crops for different growth stages.</p> "> Figure 2
<p>Flowchart of the main data processing.</p> "> Figure 3
<p>Flowchart of Continuous wavelet transformation-competitive adaptive reweighted sampling-partial least-square (CWT-CARS-PLS) algorithm.</p> "> Figure 4
<p>Statistical box line graph of chlorophyll concentration during potato growth stage for modeling dataset collected in 2018.</p> "> Figure 5
<p>Reflectance spectra of potato-crop canopy of four growth stages. (<b>a</b>) Original reflectance (Ref) spectra; (<b>b</b>) standard normal variate (SNV) reflectance spectra.</p> "> Figure 6
<p>Average SNV spectral curve of potato crop canopy per growth stage.</p> "> Figure 7
<p>Wavelet coefficient curves under different decomposition scales.</p> "> Figure 8
<p>Correlation coefficient curve between chlorophyll concentration and spectra.</p> "> Figure 9
<p>Correlation coefficient curve between chlorophyll concentration and SNV.</p> "> Figure 10
<p>Correlation coefficient map between wavelet features and growth stages.</p> "> Figure 11
<p>Location of sensitive variables selected from Ref, SNV, and wavelet features (WFs) in Scales 1–10 by using the CARS algorithm.</p> "> Figure 12
<p>Comparison of model performance (<math display="inline"><semantics> <mrow> <msubsup> <mi>R</mi> <mi>c</mi> <mn>2</mn> </msubsup> </mrow> </semantics></math>,<math display="inline"><semantics> <mrow> <msubsup> <mi>R</mi> <mi>c</mi> <mn>2</mn> </msubsup> <mo>−</mo> <msubsup> <mi>R</mi> <mrow> <mi>c</mi> <mi>v</mi> </mrow> <mn>2</mn> </msubsup> </mrow> </semantics></math> ) between PLS and CARS-PLS established by Ref, SNV, and WFs in Scales 1–10. (<b>a</b>) <math display="inline"><semantics> <mrow> <msubsup> <mi>R</mi> <mi>c</mi> <mn>2</mn> </msubsup> </mrow> </semantics></math> of PLS and CARS-PLS; (<b>b</b>) <math display="inline"><semantics> <mrow> <msubsup> <mi>R</mi> <mi>c</mi> <mn>2</mn> </msubsup> <mo>−</mo> <msubsup> <mi>R</mi> <mrow> <mi>c</mi> <mi>v</mi> </mrow> <mn>2</mn> </msubsup> </mrow> </semantics></math> of PLS and CARS-PLS.</p> "> Figure 13
<p>Validation results of PLS and CARS-PLS established by Ref, SNV, and WFs in Scales 1–10. (<b>a</b>) <math display="inline"><semantics> <mrow> <msubsup> <mi>R</mi> <mi>v</mi> <mn>2</mn> </msubsup> </mrow> </semantics></math> of PLS and CARS-PLS models; (<b>b</b>) root–mean–square error of cross-validation (RMSEV) of PLS and CARS-PLS.</p> "> Figure 14
<p>Predicted value of validation set for Scale3-CARS-PLS model.</p> "> Figure 15
<p>Testing results of the various models. (<b>a</b>) Ref-PLS; (<b>b</b>) Ref-CARS-PLS; (<b>c</b>) SNV-CARS-PLS; (<b>d</b>) Scale3-CARS-PLS.</p> ">
Abstract
:1. Introduction
2. Materials and Methods
2.1. Data Acquisition
2.1.1. Spectral Data Collection
2.1.2. Chlorophyll Content Measurement
2.2. Data Analysis
2.2.1. SNV Correction
2.2.2. CWT
2.2.3. CARS
2.2.4. PLS Method
2.2.5. CWT-CARS-PLS
2.3. Model Evaluation Indicators
3. Results
3.1. Statistics on Chlorophyll Concentration of Modeling Data
3.2. Spectral Data Analysis
3.2.1. Analysis of Spectral Response during Growth
3.2.2. Analysis of Wavelet Coefficient Curves under Different Decomposition Scales
3.3. Correlation of Spectra and Wavelet Features with Chlorophyll Concentration
3.3.1. Correlation Analysis between Chlorophyll Concentration and Spectra
3.3.2. Correlation Analysis between Chlorophyll and Wavelet Features
3.3.3. Comparison of Correlation Coefficient
3.4. Establishment and Comparison of Chlorophyll Analysis Models
3.4.1. Sensitive Chlorophyll Variables Selected Using CARS
3.4.2. Comparison of the Performance of PLS and CARS-PLS Models
3.5. Validation of Chlorophyll Analysis Models
3.6. Testing of the Developed Scale3-CARS-PLS Model
4. Discussion
4.1. Abilities of Denoising and Sensitive-Variable Mining of CWT at Different Decomposition Scales
4.2. Uninformative Variable Elimination by CARS Algorithm
4.3. Chlorophyll Content Analysis Capability of WFs under Different Decomposition Scales
4.4. Generalizability of This Study to Future Works
5. Conclusions
Author Contributions
Funding
Acknowledgments
Conflicts of Interest
References
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Growth Stage | Potato-Crop Characteristics | Samples | |
---|---|---|---|
Modelling | Testing | ||
S1 | Appearing flower buds, having about 12 leaves | 74 | 40 |
S2 | Appearing flowers | 80 | 40 |
S3 | Flowers falling, stems and leaves aging | 80 | 40 |
S4 | Stems and leaves withering, upper leaves turning yellow | 80 | 40 |
Samples | Data Set | Sample Number | Max (mg/L) | Min (mg/L) | Mean (mg/L) | STD (mg/L) |
---|---|---|---|---|---|---|
S1 | All | 74 | 40.77 | 17.64 | 28.12 | 5.05 |
Calibration | 50 | 40.77 | 17.64 | 28.27 | 5.31 | |
Validation | 24 | 33.12 | 19.64 | 27.48 | 3.86 | |
S2 | All | 80 | 41.20 | 16.30 | 31.04 | 5.81 |
Calibration | 50 | 41.20 | 16.30 | 30.23 | 6.29 | |
Validation | 30 | 37.46 | 25.26 | 33.45 | 3.04 | |
S3 | All | 80 | 35.63 | 13.70 | 22.00 | 4.18 |
Calibration | 50 | 35.63 | 13.70 | 22.04 | 4.65 | |
Validation | 30 | 26.47 | 16.39 | 21.86 | 2.36 | |
S4 | All | 80 | 32.25 | 7.66 | 15.36 | 5.45 |
Calibration | 50 | 32.25 | 7.66 | 15.73 | 5.93 | |
Validation | 30 | 20.69 | 8.20 | 14.24 | 3.55 | |
All stages | All | 314 | 41.20 | 7.66 | 24.05 | 7.95 |
Calibration | 200 | 41.20 | 7.66 | 24.07 | 7.95 | |
Validation | 114 | 37.46 | 8.20 | 24.00 | 8.00 |
Feature Location | Highest r | |
---|---|---|
Wavelength (nm) | ||
Ref | 698 | −0.50 |
SNV | 761 | 0.75 |
Scale 1 | 687 | −0.78 |
Scale 2 | 739 | 0.81 |
Scale 3 | 524 | −0.82 |
Scale 4 | 744 | 0.78 |
Scale 5 | 755 | 0.79 |
Scale 6 | 786 | 0.75 |
Scale 7 | 547 | −0.74 |
Scale 8 | 515 | −0.71 |
Scale 9 | 400 | 0.70 |
Scale 10 | 1038 | −0.70 |
Models | Variables Number | PCs | Models | Variables Number | PCs |
---|---|---|---|---|---|
Ref-CARS-PLS | 61 | 21 | Scale 5-CARS-PLS | 227 | 21 |
SNV-CARS-PLS | 64 | 17 | Scale 6-CARS-PLS | 48 | 17 |
Scale 1-CARS-PLS | 31 | 12 | Scale 7-CARS-PLS | 33 | 15 |
Scale 2-CARS-PLS | 61 | 13 | Scale 8-CARS-PLS | 54 | 18 |
Scale 3-CARS-PLS | 57 | 3 | Scale 9-CARS-PLS | 57 | 17 |
Scale 4-CARS-PLS | 178 | 19 | Scale 10-CARS-PLS | 33 | 28 |
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Liu, N.; Xing, Z.; Zhao, R.; Qiao, L.; Li, M.; Liu, G.; Sun, H. Analysis of Chlorophyll Concentration in Potato Crop by Coupling Continuous Wavelet Transform and Spectral Variable Optimization. Remote Sens. 2020, 12, 2826. https://doi.org/10.3390/rs12172826
Liu N, Xing Z, Zhao R, Qiao L, Li M, Liu G, Sun H. Analysis of Chlorophyll Concentration in Potato Crop by Coupling Continuous Wavelet Transform and Spectral Variable Optimization. Remote Sensing. 2020; 12(17):2826. https://doi.org/10.3390/rs12172826
Chicago/Turabian StyleLiu, Ning, Zizheng Xing, Ruomei Zhao, Lang Qiao, Minzan Li, Gang Liu, and Hong Sun. 2020. "Analysis of Chlorophyll Concentration in Potato Crop by Coupling Continuous Wavelet Transform and Spectral Variable Optimization" Remote Sensing 12, no. 17: 2826. https://doi.org/10.3390/rs12172826
APA StyleLiu, N., Xing, Z., Zhao, R., Qiao, L., Li, M., Liu, G., & Sun, H. (2020). Analysis of Chlorophyll Concentration in Potato Crop by Coupling Continuous Wavelet Transform and Spectral Variable Optimization. Remote Sensing, 12(17), 2826. https://doi.org/10.3390/rs12172826