Limited Efficacy of Anti-EGFR Monoclonal Antibodies in Colorectal Cancer Patients with Rare RAS Variants: Analysis of the C-CAT Database
<p>Genomic alterations and anti-EGFR antibodies (Upper, cetuximab; Lower, Panitumumab) treatment responses of rare RAS variants cases registered in the Center for Cancer Genomics and Advanced Therapeutics. TMB: Tumor Mutational Burden; PR: Partial Response; SD: Stable Disease; PD: Progressive Disease; NE: not evaluated.</p> "> Figure 1 Cont.
<p>Genomic alterations and anti-EGFR antibodies (Upper, cetuximab; Lower, Panitumumab) treatment responses of rare RAS variants cases registered in the Center for Cancer Genomics and Advanced Therapeutics. TMB: Tumor Mutational Burden; PR: Partial Response; SD: Stable Disease; PD: Progressive Disease; NE: not evaluated.</p> "> Figure 1 Cont.
<p>Genomic alterations and anti-EGFR antibodies (Upper, cetuximab; Lower, Panitumumab) treatment responses of rare RAS variants cases registered in the Center for Cancer Genomics and Advanced Therapeutics. TMB: Tumor Mutational Burden; PR: Partial Response; SD: Stable Disease; PD: Progressive Disease; NE: not evaluated.</p> ">
Abstract
:1. Introduction
2. Materials and Methods
2.1. Database and Patient Selection
2.2. Definition of Pathogenic RAS Variants
2.3. Clinical Data Collection and Outcome Assessment
2.4. Statistical Analysis
3. Results
3.1. Patient Population Characteristics
3.2. Overview of Genomic Testing Results
3.3. Treatment Outcomes Analysis
4. Discussion
5. Conclusions
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
References
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Total Cases (n = 71,779) | |||
---|---|---|---|
Primary Site | Cancer Genomics Test | ||
Colorectal | 11,992 | FoundationOne CDx | 51,944 |
Pancreas | 10,694 | FoundationOne Liquid CDx | 10,751 |
Bile Duct | 6207 | NCC Oncopanel System | 7443 |
Esophagus/Stomach | 4448 | GenMineTM TOP Cancer Panel | 915 |
Prostate | 4423 | Guardant360 CDx | 726 |
Breast | 4270 | ||
Lung | 4235 | Representative Gene Alterations | |
Ovary/Fallopian Yube | 4098 | TP53 | 42,998 |
Soft Tissue | 2962 | KRAS | 19,880 |
Uterus | 2566 | CDKN2A | 14,807 |
Others | 15,884 | APC | 14,717 |
Sex | |||
Male | 36,348 | ||
Female | 35,426 | ||
Unknown | 5 |
Total Rare RAS Variant Cases Treated with Anti-EGFR Antibodies (n = 54) | |||
---|---|---|---|
Age (years; median 62, range 32–79) | Cancer Testing Panel | ||
60–69 | 20 | FoundationOne CDx | 44 |
50–59 | 16 | NCC Oncopanel System | 6 |
70–79 | 14 | FoundationOne Liquid CDx | 3 |
40–49 | 3 | Guardant 360 CDx | 1 |
30–39 | 1 | ||
ECOG PS | |||
Sex | 0 | 30 | |
Male | 27 | 1 | 22 |
Female | 27 | 2 | 2 |
Smoking History | Metastatic Sites | ||
No | 28 | Liver | 36 |
Yes | 24 | Lung | 30 |
Unknown | 2 | Peritoneal | 15 |
Bone | 5 | ||
Drinking History | Other Sites | 20 | |
No | 41 | ||
Yes | 8 | Anti-EGFR Antibodies (Earlier Line) | |
Unknown | 5 | Panitumumab | 40 |
Cetuximab | 14 | ||
Family History (Cancer) | |||
Yes | 38 | Concomitant Use of Cytotoxic Agents | |
No | 16 | Yes | 49 |
No | 5 | ||
Specimen | |||
Primary Site | 37 | ||
Metastatic Site | 13 | ||
Blood | 4 |
MEBGEN RASKET™-B Kit | ||
KRAS | Exon2 | G12S, G12C, G12R, G12D, G12V, G12A, G13S, G13C, G13R, G13D, G13V, G13A |
Exon3 | A59T, A59G, Q61K, Q61E, Q61L, Q61P, Q61R, Q61H | |
Exon4 | K117N, A146T, A146P, A146V | |
NRAS | Exon2 | G12S, G12C, G12R, G12D, G12V, G12A, G13S, G13R, G13D, G13V, G13A |
Exon3 | A59T, A59G, Q61K, Q61E, Q61L, Q61P, Q61R, Q61H | |
Exon4 | K117N, A146T, A146P, A146V | |
BRAF | Exon15 | V600E |
OncoBEAM™ RAS CRC Kit | ||
KRAS | Exon2 | G12S, G12C, G12R, G12D, G12V, G12A, G13D |
Exon3 | A59T, Q61L, Q61R, Q61H | |
Exon4 | K117N, A146T, A146V | |
NRAS | Exon2 | G12S, G12C, G12R, G12D, G12V, G12A, G13R, G13D, G13V |
Exon3 | A59T, Q61K, Q61L, Q61R, Q61H | |
Exon4 | K117N, A146T |
Features | FoundationOne CDx | FoundationOne Liquid CDx | NCC Oncopanel System | Guardant 360 CDx | GenMine TOP Cancer Panel |
---|---|---|---|---|---|
Sample Type | FFPE tissue | FFPE tissue | FFPE tissue | Blood | FFPE tissue |
Number of Genes | 324 | 324 | 114 | 74 | 723 |
MSI Testing | Yes | Yes | Yes * | Yes | No |
TMB Assesment | Yes | Yes | Yes | No | Yes |
Minimum Tumor Content Required | 20% | N/A | 20% | N/A | 20% |
Required DNA Input | 50 ng | 2 tubes | 50 ng | 2 tubes ** | 50 ng |
Treatment Response to anti-EGFR Treatments | Response Rate to anti-EGFR Treatments | ||
Partial Response | 13 | All Cases (n = 4122) | 43.6% |
Stable Disease | 15 | RAS Wildtype Cases (n = 3513) | 44.6% |
Progressive Disease | 18 | RAS Mutation Cases (n = 611) | 38.1% |
Not Evaluated | 8 | Rare RAS Alteration Cases (n = 54) | 28.3% |
Microsatellite Instability | Disease Control Rate to anti-EGFR Treatments | ||
Microsatellite Stable | 48 | All Cases (n = 4122) | 79.2% |
Unknown | 6 | RAS Wildtype Cases (n = 3513) | 80.0% |
RAS Mutation Cases (n = 611) | 74.8% | ||
Rare RAS Alteration Cases (n = 54) | 60.9% |
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Suzuki, S.; Saito, Y.; Saito, K.; Yamada, Y.; Takahashi, K.; Kumanishi, R.; Fukui, T.; Yoshioka, T. Limited Efficacy of Anti-EGFR Monoclonal Antibodies in Colorectal Cancer Patients with Rare RAS Variants: Analysis of the C-CAT Database. Curr. Issues Mol. Biol. 2024, 46, 14476-14486. https://doi.org/10.3390/cimb46120869
Suzuki S, Saito Y, Saito K, Yamada Y, Takahashi K, Kumanishi R, Fukui T, Yoshioka T. Limited Efficacy of Anti-EGFR Monoclonal Antibodies in Colorectal Cancer Patients with Rare RAS Variants: Analysis of the C-CAT Database. Current Issues in Molecular Biology. 2024; 46(12):14476-14486. https://doi.org/10.3390/cimb46120869
Chicago/Turabian StyleSuzuki, Shuhei, Yosuke Saito, Koki Saito, Yuta Yamada, Koshi Takahashi, Ryosuke Kumanishi, Tadahisa Fukui, and Takashi Yoshioka. 2024. "Limited Efficacy of Anti-EGFR Monoclonal Antibodies in Colorectal Cancer Patients with Rare RAS Variants: Analysis of the C-CAT Database" Current Issues in Molecular Biology 46, no. 12: 14476-14486. https://doi.org/10.3390/cimb46120869
APA StyleSuzuki, S., Saito, Y., Saito, K., Yamada, Y., Takahashi, K., Kumanishi, R., Fukui, T., & Yoshioka, T. (2024). Limited Efficacy of Anti-EGFR Monoclonal Antibodies in Colorectal Cancer Patients with Rare RAS Variants: Analysis of the C-CAT Database. Current Issues in Molecular Biology, 46(12), 14476-14486. https://doi.org/10.3390/cimb46120869