[go: up one dir, main page]
More Web Proxy on the site http://driver.im/ skip to main content
10.1145/3529399.3529428acmotherconferencesArticle/Chapter ViewAbstractPublication PagesicmltConference Proceedingsconference-collections
research-article

Graph-based Similarity for Document Retrieval in the Biomedical Domain

Published: 10 June 2022 Publication History

Abstract

The growing amount of available data in the biomedical domain turns out to be beneficial for decision-making, but a sufficiently accurate DR system is required. Plenty of NLP techniques and models have been proposed for semantic similarity in DR, but few of them have been able to consider the variations of the language and relationship between distant words in texts. This work is focused on formulating a Graph-based Similarity for DR method (GBS-DR) for the biomedical domain and comparing the obtained results with traditional DR paradigms. The graph-based methods were selected to prove the importance of analyzing the semantic, syntactic, and long-distant word relationships in texts. It will be demonstrated that through the graph's topology the system can extract the structural information of documents, which solves relevant issues that are faced in this research area.
CCS CONCEPTS • Information Systems • Information Retrieval • Retrieval Models and Ranking • Learning to Rank

References

[1]
V.Boteva, D.Gholipour, A.Sokolov, and S.Riezler. “Full-Text Learning to Rank Dataset for Medical Information Retrieval”(2016)
[2]
S.Zhao, C.Su, A.Sboner and F.Wang. “GRAPHENE: A Precise Biomedical Literature Retrieval Engine with Graph Augmented Deep Learning and External Knowledge Empowerment” (2019)
[3]
G.Brokos, P.Malakasiotis and I.Androutsopoulos., “Using Centroids of Word Embeddings and Word Mover's Distance for Biomedical Document Retrieval in Question Answering” (2016).
[4]
T.Zhang, B.Liu, D.Niu, K.Lai and Y.Xu. “Multiresolution Graph Attention Networks for Relevance Matching” (2018)
[5]
T. Mikolov, K. Chen, G. Corrado and J. Dean, Efficient Estimation of Word Representations in Vector Space” (2013) International Conference on Learning Representations (2013)
[6]
Vaswani, A., Shazeer, N., Parmar, N., Uszkoreit, J., Jones, L., Gomez, A. N., Kaiser, Ł. & Polosukhin, I. (2017). Attention is all you need. Advances in Neural Information Processing Systems (p./pp. 5998–6008)
[7]
X.Yu,W.Xu, Z.Cui and S.Wu1,L.Wang “Graph-based Hierarchical Relevance Matching Signals for Ad-hoc Retrieval” (2021)
[8]
J.Frej, J.Chevallet, D.Schwab, “Knowledge Based Transformer Model for Information Retrieval” Joint Conference of the Information Retrieval Communities in Europe (CIRCLE 2020), (2020), Samatan, France. ffhal-03263784f
[9]
M. Zuckerman and M.Last “Using Graphs for Word Embedding with En-hanced Semantic Relations” (2019)
[10]
K.M. Svore and C. J. C. Burges “A Machine Learning Approach for Improved BM25 Retrieval” (2009)
[11]
T.Tan “Evolution of Language Models: N-Grams, Word Embeddings, Attention & Transformers” (2020)
[12]
C.Nicholson. “A Beginner's Guide to Attention Mechanisms and Memory Networks” (2019)

Index Terms

  1. Graph-based Similarity for Document Retrieval in the Biomedical Domain
        Index terms have been assigned to the content through auto-classification.

        Recommendations

        Comments

        Please enable JavaScript to view thecomments powered by Disqus.

        Information & Contributors

        Information

        Published In

        cover image ACM Other conferences
        ICMLT '22: Proceedings of the 2022 7th International Conference on Machine Learning Technologies
        March 2022
        291 pages
        ISBN:9781450395748
        DOI:10.1145/3529399
        Permission to make digital or hard copies of all or part of this work for personal or classroom use is granted without fee provided that copies are not made or distributed for profit or commercial advantage and that copies bear this notice and the full citation on the first page. Copyrights for components of this work owned by others than ACM must be honored. Abstracting with credit is permitted. To copy otherwise, or republish, to post on servers or to redistribute to lists, requires prior specific permission and/or a fee. Request permissions from [email protected]

        Publisher

        Association for Computing Machinery

        New York, NY, United States

        Publication History

        Published: 10 June 2022

        Permissions

        Request permissions for this article.

        Check for updates

        Author Tags

        1. Biomedical Literature
        2. Document Retrieval
        3. Graphs
        4. Natural Language Processing
        5. Search Engines

        Qualifiers

        • Research-article
        • Research
        • Refereed limited

        Conference

        ICMLT 2022

        Contributors

        Other Metrics

        Bibliometrics & Citations

        Bibliometrics

        Article Metrics

        • 0
          Total Citations
        • 50
          Total Downloads
        • Downloads (Last 12 months)5
        • Downloads (Last 6 weeks)0
        Reflects downloads up to 25 Jan 2025

        Other Metrics

        Citations

        View Options

        Login options

        View options

        PDF

        View or Download as a PDF file.

        PDF

        eReader

        View online with eReader.

        eReader

        HTML Format

        View this article in HTML Format.

        HTML Format

        Figures

        Tables

        Media

        Share

        Share

        Share this Publication link

        Share on social media