[go: up one dir, main page]
More Web Proxy on the site http://driver.im/ skip to main content
10.1145/2808719.2811415acmconferencesArticle/Chapter ViewAbstractPublication PagesbcbConference Proceedingsconference-collections
poster

Spatiotemporal visualization of cell membrane dynamics and protein colocalization reveals correlation between membrane dynamics and metastatic invasion

Published: 09 September 2015 Publication History

Abstract

Invasive migration is an important cellular behavior that drives cancer metastasis, which increases the difficulty in treatment and results in poor clinical outcomes. Metastasis is comprised of a series of dynamic processes including cancer cell migration, spreading through circulation system and invasion into distant organs. However, visualization of these underlying steps of metastasis is lack. Although spatiotemporal measurements of cell motion dynamics have been well studied to identify different dynamic patterns, little work has been done to visualize how these dynamic patterns occur on migrating cells. Therefore, we develop spatiotemporal visualization tools to broaden the application of the existing dynamical cell analysis. For instance, we propose visualization techniques to classify the cell edge velocities into three states: protrusion, quiescence and retraction and then visualize when and where these three states of membrane dynamics happen on videos of migrating cells. We also create a semi-automatic tool to allow the users to select the ROIs from the correlation map and then plot the ROIs back onto the original cell migration video. These visualization tools help the biologists to better understand the abstract velocity heat maps in a user friendly way. Biologists can also take the advantage of selecting any ROI through these tools, which enables them to easily observe important migration regions. Furthermore, we investigate the correlation between cell membrane dynamics and subcellular proteins colocalization in a cancer model system and discovered a tight coupling between active membrane dynamics and periodic protein colocalizaiton. This active membrane and periodic colocalization pattern correlates with slower and less persistent migration in 3D collagen matrix.

References

[1]
Y. Jing, B. Egil, and T. Xue-Cheng. A study on continuous max-flow and min-cut approaches. in Computer Vision and Pattern Recognition (CVPR), 2010 IEEE Conference, pages 2217--2224, 2010.
[2]
Y. Jing, B. Egil, T. Xue-Cheng, and B. Yuri. A study on continuous max-flow and min-cut approaches. UCLA CAM, pages 10--61, 2010.
[3]
M. Machacek and G. Danuser. Morphodynamic profiling of protrusion phenotypes. Biophysical Journal, 90:1439--1452, 2006.
[4]
M. Machacek, L. Hodgson, C. Welch, H. Elliott, O. Pertz, and P. N. et al. and. Coordination of rho gtpase activities during cell protrusion. Nature, 461:99--103, 2009.

Cited By

View all
  • (2017)Analysis, Recognition, and Classification of Biological Membrane ImagesTransport Across Natural and Modified Biological Membranes and its Implications in Physiology and Therapy10.1007/978-3-319-56895-9_8(119-140)Online publication date: 22-Jun-2017

Index Terms

  1. Spatiotemporal visualization of cell membrane dynamics and protein colocalization reveals correlation between membrane dynamics and metastatic invasion

      Recommendations

      Comments

      Please enable JavaScript to view thecomments powered by Disqus.

      Information & Contributors

      Information

      Published In

      cover image ACM Conferences
      BCB '15: Proceedings of the 6th ACM Conference on Bioinformatics, Computational Biology and Health Informatics
      September 2015
      683 pages
      ISBN:9781450338530
      DOI:10.1145/2808719
      Permission to make digital or hard copies of part or all of this work for personal or classroom use is granted without fee provided that copies are not made or distributed for profit or commercial advantage and that copies bear this notice and the full citation on the first page. Copyrights for third-party components of this work must be honored. For all other uses, contact the Owner/Author.

      Sponsors

      Publisher

      Association for Computing Machinery

      New York, NY, United States

      Publication History

      Published: 09 September 2015

      Check for updates

      Author Tags

      1. cancer metastasis
      2. cell membrane dynamics
      3. cell migration
      4. colocalization
      5. spatiotemporal visualization

      Qualifiers

      • Poster

      Funding Sources

      Conference

      BCB '15
      Sponsor:

      Acceptance Rates

      BCB '15 Paper Acceptance Rate 48 of 141 submissions, 34%;
      Overall Acceptance Rate 254 of 885 submissions, 29%

      Contributors

      Other Metrics

      Bibliometrics & Citations

      Bibliometrics

      Article Metrics

      • Downloads (Last 12 months)3
      • Downloads (Last 6 weeks)1
      Reflects downloads up to 23 Dec 2024

      Other Metrics

      Citations

      Cited By

      View all
      • (2017)Analysis, Recognition, and Classification of Biological Membrane ImagesTransport Across Natural and Modified Biological Membranes and its Implications in Physiology and Therapy10.1007/978-3-319-56895-9_8(119-140)Online publication date: 22-Jun-2017

      View Options

      Login options

      View options

      PDF

      View or Download as a PDF file.

      PDF

      eReader

      View online with eReader.

      eReader

      Media

      Figures

      Other

      Tables

      Share

      Share

      Share this Publication link

      Share on social media