Abstract
Image registration problem often arises in microscopy when analyzing cell images. The most popular registration methods are rigid methods that use affine transformations. These methods are good enough for different types of images and image modalities, but they are very slow. This makes speed optimization techniques for these methods of particular importance. In this paper, we propose an algorithm for finding the optimal image downsampling coefficient to speedup image registration methods. The algorithm is tested for different rigid registration methods on HeLa cell images.
Similar content being viewed by others
Explore related subjects
Discover the latest articles, news and stories from top researchers in related subjects.REFERENCES
Oliveira, F.P.M. and Tavares, J.M.R.S., Medical image registration: A review, Comput. Methods Biomech. Biomed. Eng., 2014, vol. 17, no. 2, pp. 73–94.
Senyukova, O.V. and Zubov, A.Yu., Full anatomical labeling of magnetic resonance images of human brain by registration with multiple atlases, Program. Comput. Software, 2016, vol. 42, no. 6, pp. 356–360.
Brown, L.G., A Survey of Image Registration Techniques, Columbia University, 1991, pp. 1–60.
Sorokin, D.V., Suchankova, J., Bartova, E., and Matula, P., Visualizing stable features in live cell nucleus for evaluation of the cell global motion compensation, Folia Biologica, 2014, vol. 60, pp. 45–49.
Zhao, Y., Yao, R., Ouyang, L., Ding, H., Zhang, T., Zhang, K., Cheng, S., and Sun, W., Three-dimensional printing of Hela cells for cervical tumor model in vitro, Biofabrication, 2014, vol. 6, pp. 1–10.
Flusser, J. and Suk, T., A moment-based approach to registration of images with affine geometric distortion, IEEE Trans. Geosci. Remote Sens., 1994, vol. 32, no. 2, pp. 382–387.
Ashburner, J., A fast diffeomorphic image registration algorithm, NeuroImage, 2007, vol. 38, pp. 95–113.
Reddy, B.S. and Chatterji, B.N., An FFT-based technique for translation, rotation, and scale-invariant image registration, IEEE Trans. Image Process., 1996, vol. 5, no. 8, pp. 1266–1271.
Maes, F., Vandermeulen, D., and Suetens, P., Medical image registration using mutual information, Proc. Institute of Electrical and Electronics Engineers (IEEE), 2003, vol. 91, no. 10, pp. 1699–1722.
Amintoosi, M., Fathy, M., and Mozayani, N., Precise image registration with structural similarity error measurement applied to superresolution, EURASIP J. Adv. Signal Process., 2009, pp. 23–30.
Avants, B.B., Epstein, C.L., Grossman, M., and Gee, J.C., Symmetric diffeomorphic image registration with cross-correlation: Evaluating automated labeling of elderly and neurodegenerative brain, Med. Image Anal., 2008, vol. 12, no. 1, pp. 26–41.
Sitdikov, I., Guryanov, F., and Krylov, A.S., Accelerated mutual entropy maximization for biomedical image registration, Proc. Image Processing Theory, Tools, and Applications, 2015, pp. 337–340.
Guryanov, F.A. and Krylov, A.S., Optimization of correlation methods for registration of biomedical images, Trudy 27-oi Mezhdunarodnoi konferentsii po komp’yuternoi grafike i mashinnomu zreniyu (Proc. 27th Int. Conf. Computer Graphics and Machine Vision), 2017, pp. 253–258.
Guryanov, F. and Krylov, A.S., Fast medical image registration using bidirectional empirical mode decomposition, Signal Process. Image Commun., 2017, vol. 59, pp. 12–17.
Bhuiyan, S.M.A., Adhami, R.R., and Khan, J.F., A novel approach of fast and adaptive bidimensional empirical mode decomposition, IEEE Int. Conf. Acoustics, Speech, and Signal Processing, 2008, pp. 1313–1316.
ACKNOWLEDGMENTS
This work was supported by the Russian Science Foundation, project no. 17-11-01279.
Author information
Authors and Affiliations
Corresponding authors
Additional information
Translated by Yu. Kornienko
Rights and permissions
About this article
Cite this article
Guryanov, F.A., Krylov, A.S. Optimization Method for Cell Image Registration. Program Comput Soft 44, 266–270 (2018). https://doi.org/10.1134/S0361768818040072
Received:
Published:
Issue Date:
DOI: https://doi.org/10.1134/S0361768818040072