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From quantitative metrics to clinical success: assessing the utility of deep learning for tumor segmentation in breast surgery

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International Journal of Computer Assisted Radiology and Surgery Aims and scope Submit manuscript

Abstract

Purpose

Preventing positive margins is essential for ensuring favorable patient outcomes following breast-conserving surgery (BCS). Deep learning has the potential to enable this by automatically contouring the tumor and guiding resection in real time. However, evaluation of such models with respect to pathology outcomes is necessary for their successful translation into clinical practice.

Methods

Sixteen deep learning models based on established architectures in the literature are trained on 7318 ultrasound images from 33 patients. Models are ranked by an expert based on their contours generated from images in our test set. Generated contours from each model are also analyzed using recorded cautery trajectories of five navigated BCS cases to predict margin status. Predicted margins are compared with pathology reports.

Results

The best-performing model using both quantitative evaluation and our visual ranking framework achieved a mean Dice score of 0.959. Quantitative metrics are positively associated with expert visual rankings. However, the predictive value of generated contours was limited with a sensitivity of 0.750 and a specificity of 0.433 when tested against pathology reports.

Conclusion

We present a clinical evaluation of deep learning models trained for intraoperative tumor segmentation in breast-conserving surgery. We demonstrate that automatic contouring is limited in predicting pathology margins despite achieving high performance on quantitative metrics.

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Notes

  1. https://github.com/Project-MONAI/MONAI.

  2. https://github.com/SlicerIGT/aigt.

  3. https://github.com/PerkLab/SegmentationComparison.

  4. https://github.com/SlicerIGT.

References

  1. Sung H, Ferlay J, Siegel RL, Laversanne M, Soerjomataram I, Jemal A, Bray F (2021) Global cancer statistics 2020: Globocan estimates of incidence and mortality worldwide for 36 cancers in 185 countries. CA: Cancer J Clin 71(3):209–249

    PubMed  Google Scholar 

  2. Senkus E, Kyriakides S, Ohno S, Penault-Llorca F, Poortmans P, Rutgers E, Zackrisson S, Cardoso F (2015) Primary breast cancer: ESMO clinical practice guidelines for diagnosis, treatment and follow-up. Ann Oncol 26:8–30

    Article  Google Scholar 

  3. Houssami N, Macaskill P, Luke Marinovich M, Morrow M (2014) The association of surgical margins and local recurrence in women with early-stage invasive breast cancer treated with breast-conserving therapy: a meta-analysis. Ann Surg Oncol 21:717–730

    Article  PubMed  PubMed Central  Google Scholar 

  4. Lepomäki M, Karhunen-Enckell U, Tuominen J, Kronqvist P, Oksala N, Murtola T, Roine A (2022) Tumor margins that lead to reoperation in breast cancer: a retrospective register study of 4,489 patients. J Surg Oncol 125(4):577–588

    Article  PubMed  Google Scholar 

  5. Ungi T, Gauvin G, Lasso A, Yeo CT, Pezeshki P, Vaughan T, Carter K, Rudan J, Engel CJ, Fichtinger G (2016) Navigated breast tumor excision using electromagnetically tracked ultrasound and surgical instruments. IEEE Trans Biomed Eng 63(3):600–606

    Article  PubMed  Google Scholar 

  6. Gauvin G, Yeo CT, Ungi T, Merchant S, Lasso A, Jabs D, Vaughan T, Rudan JF, Walker R, Fichtinger G, Engel CJ (2020) Real-time electromagnetic navigation for breast-conserving surgery using NaviKnife technology: a matched case-control study. Breast J 26(3):399–405

    Article  PubMed  Google Scholar 

  7. Wang R, Lei T, Cui R, Zhang B, Meng H, Nandi AK (2022) Medical image segmentation using deep learning: a survey. IET Image Proc 16(5):1243–1267

    Article  Google Scholar 

  8. Ronneberger O, Fischer P, Brox T (2015) U-net: convolutional networks for biomedical image segmentation. In: Navab N, Hornegger J, Wells WM, Frangi AF (eds) Medical image computing and computer-assisted intervention—MICCAI 2015. Springer, Cham, pp 234–241

    Google Scholar 

  9. Hu Z, Nasute Fauerbach PV, Yeung C, Ungi T, Rudan J, Engel CJ, Mousavi P, Fichtinger G, Jabs D (2022) Real-time automatic tumor segmentation for ultrasound-guided breast-conserving surgery navigation. Int J Comput Assist Radiol Surg 17(9):1663–1672

    Article  PubMed  Google Scholar 

  10. Isensee F, Jaeger PF, Kohl SA, Petersen J, Maier-Hein KH (2021) nnU-Net: a self-configuring method for deep learning-based biomedical image segmentation. Nat Methods 18(2):203–211

    Article  CAS  PubMed  Google Scholar 

  11. Oktay O, Schlemper J, Folgoc LL, Lee M, Heinrich M, Misawa K, Mori K, McDonagh S, Hammerla NY, Kainz B, et al (2018) Attention U-Net: learning where to look for the pancreas. arXiv:1804.03999 (2018)

  12. Hatamizadeh A, Tang Y, Nath V, Yang D, Myronenko A, Landman B, Roth HR, Xu D (2022) Unetr: transformers for 3d medical image segmentation. In: Proceedings of the IEEE/CVF winter conference on applications of computer vision (WACV), pp 574–584

  13. Sherer MV, Lin D, Elguindi S, Duke S, Tan L-T, Cacicedo J, Dahele M, Gillespie EF (2021) Metrics to evaluate the performance of auto-segmentation for radiation treatment planning: a critical review. Radiother Oncol 160:185–191

    Article  PubMed  PubMed Central  Google Scholar 

  14. Cha E, Elguindi S, Onochie I, Gorovets D, Deasy JO, Zelefsky M, Gillespie EF (2021) Clinical implementation of deep learning contour autosegmentation for prostate radiotherapy. Radiother Oncol 159:1–7

    Article  PubMed  PubMed Central  Google Scholar 

  15. Zhong Y, Yang Y, Fang Y, Wang J, Hu W (2021) A preliminary experience of implementing deep-learning based auto-segmentation in head and neck cancer: a study on real-world clinical cases. Front Oncol 11:638197

    Article  PubMed  PubMed Central  Google Scholar 

  16. Gooding MJ, Smith AJ, Tariq M, Aljabar P, Peressutti D, Stoep J, Reymen B, Emans D, Hattu D, Loon J, Rooy M, Wanders R, Peeters S, Lustberg T, Soest J, Dekker A, Elmpt W (2018) Comparative evaluation of autocontouring in clinical practice: a practical method using the turing test. Med Phys 45(11):5105–5115

    Article  PubMed  Google Scholar 

  17. Duan J, Bernard M, Downes L, Willows B, Feng X, Mourad WF, St Clair W, Chen Q (2022) Evaluating the clinical acceptability of deep learning contours of prostate and organs-at-risk in an automated prostate treatment planning process. Med Phys 49(4):2570–2581

    Article  PubMed  Google Scholar 

  18. Fedorov A, Beichel R, Kalpathy-Cramer J, Finet J, Fillion-Robin J-C, Pujol S, Bauer C, Jennings D, Fennessy F, Sonka M, Buatti J, Aylward S, Miller JV, Pieper S, Kikinis R (2012) 3D slicer as an image computing platform for the quantitative imaging network. Magn Resonance Imaging 30(9):1323–1341

    Article  Google Scholar 

  19. Lasso A, Heffter T, Rankin A, Pinter C, Ungi T, Fichtinger G (2014) Plus: open-source toolkit for ultrasound-guided intervention systems. IEEE Trans Biomed Eng 61(10):2527–2537

    Article  PubMed  PubMed Central  Google Scholar 

  20. Tan M, Le QV (2020) EfficientNet: rethinking model scaling for convolutional neural networks

  21. Myronenko A (2019) 3D MRI brain tumor segmentation using autoencoder regularization. In: Crimi A, Bakas S, Kuijf H, Keyvan F, Reyes M, Walsum T (eds) Brainlesion: glioma, multiple sclerosis, stroke and traumatic brain injuries. Springer, Cham, pp 311–320

    Chapter  Google Scholar 

  22. Hatamizadeh A, Tang Y, Nath V, Yang D, Myronenko A, Landman B, Roth H, Xu D (2021) UNETR: transformers for 3D medical image segmentation

  23. Lin T-Y, Goyal P, Girshick R, He K, Dollar P (2017) Focal loss for dense object detection. In: Proceedings of the IEEE international conference on computer vision (ICCV)

  24. Salehi SSM, Erdogmus D, Gholipour A (2017) Tversky loss function for image segmentation using 3D fully convolutional deep networks. In: Wang Q, Shi Y, Suk H-I, Suzuki K (eds) Machine learning in medical imaging. Springer, Cham, pp 379–387

    Chapter  Google Scholar 

  25. Chen L-C, Papandreou G, Kokkinos I, Murphy K, Yuille AL (2018) Deeplab: Semantic image segmentation with deep convolutional nets, atrous convolution, and fully connected crfs. IEEE Trans Pattern Anal Mach Intell 40(4):834–848

    Article  PubMed  Google Scholar 

Download references

Acknowledgements

This work was supported by the Natural Sciences and Engineering Research Council of Canada (NSERC) and the Canadian Institutes of Health Research (CIHR).

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Correspondence to Chris Yeung.

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All procedures performed in this study involving human participants were in accordance with the ethical standards of the institutional research committee and with the 1964 Helsinki declaration and its later amendments or comparable ethical standards.

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Yeung, C., Ungi, T., Hu, Z. et al. From quantitative metrics to clinical success: assessing the utility of deep learning for tumor segmentation in breast surgery. Int J CARS 19, 1193–1201 (2024). https://doi.org/10.1007/s11548-024-03133-y

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  • DOI: https://doi.org/10.1007/s11548-024-03133-y

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