Abstract
Background
Glioblastoma multiforme (GBM) is an aggressive and lethal brain cancer, which is incurable with standard cancer treatments. miRNAs have great potential to be used for gene therapy due to their ability to modulate several target genes simultaneously. We found miR-429 is downregulated in GBM and has several predicted target genes from the ERBB signaling pathway using bioinformatics tools. ERBB is the most over-activated genetic pathway in GBM patients, which is responsible for augmented cell proliferation and migration in GBM.
Methods and results
Here, miR-429 was overexpressed using lentiviral vectors in U-251 and U-87 GBM cells and it was observed that the expression level of several oncogenes of the ERBB pathway, EGFR, PIK3CA, PIK3CB, KRAS, and MYC significantly decreased, as shown by real-time PCR and western blotting. Using the luciferase assay, we showed that miR-429 directly targets MYC, BCL2, and EGFR. In comparison to scrambled control, miR-429 had a significant inhibitory effect on cell proliferation and migration as deduced from MTT and scratch wound assays and induced cell-cycle arrest and apoptosis in flow cytometry.
Conclusions
Altogether, miR-429 seems to be an efficient suppressor of the ERBB genetic signaling pathway and a potential therapeutic for GBM.
Similar content being viewed by others
Data availability
The datasets used and/or analyzed during the current study are available from the corresponding author on reasonable request.
References
Ostrom QT, Cioffi G, Gittleman H, Patil N, Waite K, Kruchko C et al (2019) CBTRUS statistical report: primary brain and other central nervous system tumors diagnosed in the United States in 2012–2016. Neuro Oncology 21:v1–v100
Louis D (2006) Molecular pathology of malignant gliomas. Ann Rev Pathol Mech Dis 1:97–117
Schwartzbaum J, Fisher J, Aldape K, Wrensch M (2006) Epidemiology and molecular pathology of glioma. Nat Clin Pract Neurol 2:494–503
Séhédic D, Cikankowitz A, Hindré F, Davodeau F, Garcion E (2015) Feature review nanomedicine to overcome radioresistance in glioblastoma stem-like cells and surviving clones. Trends Pharmacol Sci 36:236–252
Kim S, Harford J, Pirollo K, Chang E (2015) Effective treatment of glioblastoma requires crossing the blood-brain barrier and targeting tumors including cancer stem cells: the promise of nanomedicine. Biochem Biophys Res Commun 468:485–489
Alifieris C, Trafalis D (2015) Glioblastoma multiforme: pathogenesis and treatment. Pharmacol Ther 152:63–82
Urbanska K, Sokołowska J, Szmidt M, Sysa P (2014) Glioblastoma multiforme an overview. Contemp Oncol 18:307–312
Adamson C, Kanu O, Mehta A, Di C, Lin N, Mattox A et al (2009) Glioblastoma multiforme: a review of where we have been and where we are going. Expert Opin Investig Drugs 18:1061–1083
Anjuma K, Shagufta B, Abbas S, Patel S, Khan I, Ali Shah S et al (2017) Current status and future therapeutic perspectives of glioblastoma multiforme (GBM) therapy: a review. Biomed Pharmacother 92:681–689
Kane J, Miska J, Young J, Kanojia D, Kim J, Lesniak M (2015) Sui generis: gene therapy and delivery systems for the treatment of glioblastoma. Neuro Oncology 17(Suppl 2):ii24–ii36
Ambros V (2004) The functions of animal microRNAs. Nature 431:350–355
Lindow M, Kauppinen S (2012) Discovering the first microRNA-targeted drug. J Cell Biol 199:407–412
Chakraborty C, Sharma A, Sharma G, Priya Doss C, Lee S (2017) Therapeutic miRNA and siRNA: moving from bench to clinic as next generation medicine. Mol Ther Neucleic Acids 8:132–143
Yang G, Yin B (2014) The advance of application for microRNAs in cancer gene therapy. Biomed Pharmacother 68:137–142
Calin GA, Croce CM (2006) MicroRNA signatures in human cancers. Nat Rev Cancer 6:857–866
Calin G, Sevignani C, Dumitru C, Hyslop T, Noch E, Yendamuri S et al (2004) Human microRNA genes are frequently located at fragile sites and genomic regions involved in cancers. Proc Natl Acad Sci USA 101:2999–3004
Ciafrè S, Galardi S, Mangiola A, Ferracin M, Liu C, Sabatino G et al (2005) Extensive modulation of a set of microRNAs in primary glioblastoma. Biochem Biophys Res Commun 335:1351–1358
Novakova J, Slabya O, Vyzula R, Michalek J (2009) MicroRNA involvement in glioblastoma pathogenesis. Biochem Biophys Res Commun 386:1–5
Hua D, Mo F, Ding D, Li L, Han X, Zhao N et al (2012) A Catalogue of glioblastoma and brain microRNAs identified by deep sequencing. Omics 16:690–699
Berthois Y, Delfino C, Metellus P, Fina F, Nanni-Metellus I, Al Aswy H et al (2014) Differential expression of miR200a-3p and miR21 in grade II–III and grade IV gliomas. Cancer Biol Ther 15:938–950
Ghaemi S, Arefian E, Rezazadeh Valojerdi R, Soleimani M, Moradi Motlagh A, Jamshidi Adegani F (2020) Inhibiting the expression of anti-apoptotic genes BCL2L1 and MCL1, and apoptosis induction in glioblastoma cells by microRNA-342. Biomed Pharmacother 121:109641
Moradi Motlagh A, Arefian E, Rezazadeh Valojerdi R, Ghaemi S, Jamshidi Adegani F, Soleimani M (2020) MicroRNA-129 inhibits glioma cell growth by targeting CDK4, CDK6, and MDM2. Mol Ther 19:759–64
Allahverdi A, Arefian E, Soleimani M, Ai J, Nahanmoghaddam N, Yousefi-Ahmadipour A, Ebrahimi-Barough S (2020) MicroRNA-4731-5p delivered by AD-mesenchymal stem cells induces cell cycle arrest and apoptosis in glioblastoma. J Cell Physiol 235(11):8167–75
Li W, Ma M, Dong L, Wang F, Lx C, Li X (2011) MicroRNA-34a targets notch1 and inhibits cell proliferation in glioblastoma multiforme. Cancer Biol Ther 12:477–83
Cai X, Sughrue ME (2018) Glioblastoma new therapeutic strategies to address cellular and genomic complexity. Oncotarget 9:9540–9554
Wang J, Cazzato E, Ladewig E, Frattini V, Rosenbloom D, Zairis S et al (2016) Clonal evolution of glioblastoma under therapy. Nat Genet 48:768–776
Miranda A, Blanco-Prieto M, Sousaa J, Pais A, Vitorinoa C (2017) Breaching barriers in glioblastoma. Part I: molecular pathways and novel treatment approaches. Int J Pharm 531:372–88
Brennan C, Verhaak R, McKenna A, Campos B, Noushmehr H, Salama S et al (2013) The somatic genomic landscape of glioblastoma. Cell 155:462–477
Hynes N, MacDonald G (2009) ErbB receptors and signaling pathways in cancer. Curr Opin Cell Biol 21:177–184
Kalhori M, Arefian E, Fallah Atanaki F, Kavousi K, Soleimani M (2020) miR-548x and miR-4698 controlled cell proliferation by affecting the PI3K/AKT signaling pathway in Glioblastoma cell lines. Sci Rep 10:1–12
Kalhori M, Irani S, Soleimani M, Arefian E, Kouhkan F (2019) The effect of miR-579 on the PI3K/AKT pathway in human glioblastoma PTEN mutant cell lines. J Cell Biochem 120:16760–16774
Qiu M, Liang Z, Chen L, Tan G, Wang K, Liu L et al (2015) MicroRNA-429 suppresses cell proliferation, epithelial-mesenchymal transition, and metastasis by direct targeting of BMI1 and E2F3 in renal cell carcinoma. Urol Oncol 332:e9–e18
Li D, Wang H, Song H, Xu H, Zhao B, Wu C et al (2017) The microRNAs miR-200b-3p and miR-429-5p target the LIMK1/CFL1 pathway to inhibit growth and motility of breast cancer cells. Oncotarget 8:85276
Zhang M, Dong B-B, Lu M, Zheng M-J, Chen H, Ding J-Z et al (2016) miR-429 functions as a tumor suppressor by targeting FSCN1 in gastric cancer cells. OncoTargets Ther 9:1123
Chen W, Zhang B, Guo W, Gao L, Shi L, Li H et al (2015) miR-429 inhibits glioma invasion through BMK1 suppression. J Neurooncol 125:43–54
Dong H, Hao X, Cui B, Guo M (2017) MiR-429 suppresses glioblastoma multiforme by targeting SOX2. Cell Biochem Funct 35:260–268
Ouyang Y, Gao P, Zhu B, Chen X, Lin F, Wang X et al (2015) Downregulation of microRNA-429 inhibits cell proliferation by targeting p27Kip1 in human prostate cancer cells. Mol Med Rep 11:1435–1441
Lang Y, Xu S, Ma J, Wu J, Jin S, Cao S et al (2014) MicroRNA-429 induces tumorigenesis of human non-small cell lung cancer cells and targets multiple tumor suppressor genes. Biochem Biophys Res Commun 450:154–159
Guo C, Liu S, Sun M (2020) miR-429 as biomarker for diagnosis, treatment and prognosis of cancers and its potential action mechanisms: a systematic literature review. Neoplasma 67:215–228
Dweep H, Sticht C, Pandey P, Gretz N (2011) miRWalk - database: prediction of possible miRNA binding sites by “walking” the genes of 3 genomes. J Biomed Inform 44:839–847
Dweep H, Gretz N (2015) miRWalk2.0: a comprehensive atlas of microRNA-target interactions. Nat Methods 2015; 12:697–
Edgar R, Domrachev M, Lash A (2002) Gene Expression Omnibus: NCBI gene expression and hybridization array data repository. Nucleic Acids Res 30:207–210
Barrett T, Wilhite S, Ledoux P, Evangelista C, Kim I, Tomashevsky M et al (2013) NCBI GEO: archive for functional genomics data sets–update. Nucleic Acids Res 41:D991–D995
Agarwal V, Bell G, Nam J, Bartel D (2015) Predicting effective microRNA target sites in mammalian mRNAs. eLife 4:e5005
Kanehisa M, Goto S (2000) KEGG: Kyoto encyclopedia of genes and genomes. Nucleic Acids Res 28:27–30
Kanehisa M, Sato Y, Furumichi M, Morishima K, Tanabe M (2019) New approach for understanding genome variations in KEGG. Nucleic Acids Res 47:D590–D595
Kanehisa M (2019) Toward understanding the origin and evolution of cellular organisms. Protein Sci 28:1947–1951
Papatheodorou I, Fonseca N, Keays M, Tang Y, Barrera E, Bazant W, Petryszak R et al (2017) Expression Atlas: gene and protein expression across multiple studies and organisms. Nucleic Acids Res 46:D246–D251
Petryszak R, Fonseca N, Füllgrabe A, Huerta L, Keays M, Tang Y et al (2017) The RNASeq-er API—a gateway to systematically updated analysis of public RNA-seq data. Bioinformatics 33:2218–2220
Fonseca N, Marioni J, Brazma A (2014) RNA-Seq gene profiling—a systematic empirical comparison. PLoS ONE 9:e107026
Kozomara A, Birgaoanu M, Griffiths-Jones S (2019) miRBase: from microRNA sequences to function. Nucleic Acids Res 47:D155–D162
Griffiths-Jones S (2004) The microRNA Registry. Nucleic Acids Res 32:D109–D111
Naderi M, Abdul Tehrani H, Soleimani M, Shabani I, Hashemi S. A Home-brew Real-time PCR Assay for Reliable Detection and Quantification of Mature miR-122. Appl Immunohistochem Mol Morphol 2015; 23.
Calin G, Dumitru C, Shimizu M, Bichi R, Zupo S, Noch E et al (2002) Frequent deletions and down-regulation of micro- RNA genes miR15 and miR16 at 13q14 in chronic lymphocytic leukemia. Proc Natl Acad Sci USA 99:15524–15529
Hydbring P, Badalian-Very G (2013) Clinical applications of microRNAs. F1000Res 2:136
Torsvik A, Stieber D, Enger P, Golebiewska A, Molven A, Svendsen A et al (2014) U-251 revisited: genetic drift and phenotypic consequences of long-term cultures of glioblastoma cells. Cancer Med 3:812–824
Patil V, Pal J, Somasundaram K (2015) Elucidating the cancer-specific genetic alteration spectrum of glioblastoma derived cell lines from whole exome and RNA sequencing. Oncotarget 6:43452–43471
McLendon R, Friedman A, Bigner D, Van Meir EG, Brat DJ, Mastrogianakis MG et al (2008) Comprehensive genomic characterization defines human glioblastoma genes and core pathways. Nature 455:1061–8
Zhang C, Chang C, Gao H, Wang Q, Zhang F, Xu C (2018) MiR-429 regulates rat liver regeneration and hepatocyte proliferation by targeting JUN/MYC/BCL2/CCND1 signaling pathway. Cell Signal 50:80–89
Wang H, Wang W, Zhuang H, Xu M (2018) MiR-429 regulates the proliferation and apoptosis of nephroblastoma cells through targeting c-myc. Eur Rev Med Pharmacol Sci 22:5172–5179
Sun T, Wang C, Xing J, Wu D (2011) miR-429 modulates the expression of c-myc in human gastric carcinoma cells. Eur J Cancer 47:2552–2559
Zhu P, Zhang J, Zhu J, Shi J, Zhu Q, Gao Y (2015) MiR-429 induces gastric carcinoma cell apoptosis through Bcl-2. Cell Physiol Biochem 37:1572–1580
Wang Y, Li M, Zang W, Ma Y, Wang N, Li P et al (2013) MiR-429 up-regulation induces apoptosis and suppresses invasion by targeting Bcl-2 and SP-1 in esophageal carcinoma. Cell Oncol (Dordr) 36:385–394
Messaoudi K, Clavreul A, Lagarce F (2015) Toward an effective strategy in glioblastoma treatment. Part I: resistance mechanisms and strategies to overcome resistance of glioblastoma to temozolomide. Drug Discov Today 20:899–905
Feng H, Hu B, Vuori K, Sarkaria J, Furnari F, Cavenee W et al (2014) EGFRvIII stimulates glioma growth and invasion through PKA-dependent serine phosphorylation of Dock180. Oncogene 33:2504–2512
Holmen S, Williams B (2005) Essential role for Ras signaling in glioblastoma maintenance. Cancer Res 65:8250–8255
Xu P, Zhang G, Hou S, Sha L (2018) MAPK8 mediates resistance to temozolomide and apoptosis of glioblastoma cells through MAPK signaling pathway. Biomed Pharmacother 106:1419–1427
Gheidari F, Arefian E, Jamshidi-Adeghani F, Soleimani M (2016) Differentiation induction effect of Mir-429 over-expression in U251 glioma cell line. Int Clin Neurosci J 3:201–205
Acknowledgements
The authors would like to thank the National Institute for Medical Research Development (NIMAD) for the financial support of this work (Grant No. 942974). The authors would also like to acknowledge Dr. Fatemeh Jamshidi Adegani for her mentorship role in this project and Dr. Marie Shamseddin for native English review.
Author information
Authors and Affiliations
Contributions
The study was conceptualized by EA and MS. The methodology was given by EA, FG, and FS. Formal analysis and investigation were done by FG and EA. Writing and original draft preparation was done by FG and EA. Writing, review, and editing were done by ES, MK and LTT. Funding acquisition was provided by MS and EA. FG and FS performed experiments.
Corresponding authors
Ethics declarations
Conflict of interest
The authors declare that there is no conflict of interest.
Additional information
Publisher's Note
Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.
Supplementary Information
Below is the link to the electronic supplementary material.
Rights and permissions
Springer Nature or its licensor holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law.
About this article
Cite this article
Gheidari, F., Arefian, E., Saadatpour, F. et al. The miR-429 suppresses proliferation and migration in glioblastoma cells and induces cell-cycle arrest and apoptosis via modulating several target genes of ERBB signaling pathway. Mol Biol Rep 49, 11855–11866 (2022). https://doi.org/10.1007/s11033-022-07903-2
Received:
Accepted:
Published:
Issue Date:
DOI: https://doi.org/10.1007/s11033-022-07903-2