Abstract
Computed tomography (CT) is an imaging technique extensively used in medical treatment, but too much radiation dose in a CT scan will cause harm to the human body. Decreasing the dose of radiation will result in increased noise and artifacts in the reconstructed image, blurring the internal tissue and edge details. To get high-quality CT images, we present a multi-scale feature fusion network (MSFLNet) for low-dose CT (LDCT) denoising. In our MSFLNet, we combined multiple feature extraction modules, effective noise reduction modules, and fusion modules constructed using the attention mechanism to construct a horizontally connected multi-scale structure as the overall architecture of the network, which is used to construct different levels of feature maps at all scales. We innovatively define a composite loss function composed of pixel-level loss based on MS-SSIM-L1 and edge-based edge loss for LDCT denoising. In short, our approach learns a rich set of features that combine contextual information from multiple scales while maintaining the spatial details of denoised CT images. Our laboratory results indicate that compared with the existing methods, the peak signal-to-noise ratio (PSNR) value of CT images of the AAPM dataset processed by the new model is 33.6490, and the structural similarity (SSIM) value is 0.9174, which also achieves good results on the Piglet dataset with different doses. The results also show that the method removes noise and artifacts while effectively preserving CT images’ architecture and grain information.
Similar content being viewed by others
References
S. Hu, B. Lei, S. Wang, Y. Wang, Z. Feng, and Y. Shen, "Bidirectional Mapping Generative Adversarial Networks for Brain MR to PET Synthesis," IEEE Transactions on Medical Imaging, vol. 41, no. 1, pp. 145-157, 2022. https://doi.org/10.1109/TMI.2021.3107013.
S. Wang et al., "Diabetic Retinopathy Diagnosis Using Multichannel Generative Adversarial Network With Semisupervision," IEEE Transactions on Automation Science and Engineering, vol. 18, no. 2, pp. 574-585, 2021. https://doi.org/10.1109/TASE.2020.2981637.
S. You et al., "Fine Perceptive GANs for Brain MR Image Super-Resolution in Wavelet Domain," IEEE Transactions on Neural Networks and Learning Systems, pp. 1–13, 2022. https://doi.org/10.1109/TNNLS.2022.3153088.
F. E. Boas and D. Fleischmann, "CT artifacts: Causes and reduction techniques," Imaging in Medicine, vol. 4, pp. 229-240, 2012.
D. J. Brenner and E. J. Hall, "Current concepts - Computed tomography - An increasing source of radiation exposure," New England Journal of Medicine, vol. 357, no. 22, pp. 2277-2284, Nov 29 2007. https://doi.org/10.1056/NEJMra072149.
S. Trattner et al., "Standardization and Optimization of CT Protocols to Achieve Low Dose," Journal of the American College of Radiology, vol. 11, no. 3, pp. 271-278, Mar 2014. https://doi.org/10.1016/j.jacr.2013.10.016.
J. Liu et al., "Discriminative Feature Representation to Improve Projection Data Inconsistency for Low Dose CT Imaging," Ieee Transactions on Medical Imaging, vol. 36, no. 12, pp. 2499-2509, Dec 2017. https://doi.org/10.1109/tmi.2017.2739841.
A. Manduca et al., "Projection space denoising with bilateral filtering and CT noise modeling for dose reduction in CT," Medical Physics, vol. 36, no. 11, pp. 4911-4919, Nov 2009. https://doi.org/10.1118/1.3232004.
J. Wang, T. Li, H. Lu, and Z. Liang, "Penalized weighted least-squares approach to sinogram noise reduction and image reconstruction for low-dose X-ray computed tomography," Ieee Transactions on Medical Imaging, vol. 25, no. 10, pp. 1272-1283, Oct 2006. https://doi.org/10.1109/tmi.2006.882141.
J. Wang, H. Lu, T. Li, and Z. Liang, "Sinogram noise reduction for low-dose CT by statistics-based nonlinear filters," in Medical Imaging 2005 - Image Processing, February 13, 2005 - February 17, 2005, San Diego, CA, United states, 2005, vol. 5747: SPIE, in Progress in Biomedical Optics and Imaging - Proceedings of SPIE, III ed., pp. 2058–2066. https://doi.org/10.1117/12.595662. [Online]. Available: https://doi.org/10.1117/12.595662
M. Beister, D. Kolditz, and W. A. Kalender, "Iterative reconstruction methods in X-ray CT," Physica Medica-European Journal of Medical Physics, vol. 28, no. 2, pp. 94-108, Apr 2012. https://doi.org/10.1016/j.ejmp.2012.01.003.
A. K. Hara, R. G. Paden, A. C. Silva, J. L. Kujak, H. J. Lawder, and W. Pavlicek, "Iterative Reconstruction Technique for Reducing Body Radiation Dose at CT: Feasibility Study," American Journal of Roentgenology, vol. 193, no. 3, pp. 764-771, Sep 2009. https://doi.org/10.2214/ajr.09.2397.
D. Lee et al., "A Feasibility Study of Low-Dose Single-Scan Dual-Energy Cone-Beam CT in Many-View Under-Sampling Framework," Ieee Transactions on Medical Imaging, vol. 36, no. 12, pp. 2578-2587, Dec 2017. https://doi.org/10.1109/tmi.2017.2765760.
J. Liu et al., "3D Feature Constrained Reconstruction for Low-Dose CT Imaging," IEEE Transactions on Circuits and Systems for Video Technology, vol. 28, no. 5, pp. 1232-1247, 2018. https://doi.org/10.1109/TCSVT.2016.2643009.
Y. Chen et al., "Improving abdomen tumor low-dose CT images using a fast dictionary learning based processing," Physics in Medicine and Biology, vol. 58, no. 16, pp. 5803-5820, Aug 21 2013. https://doi.org/10.1088/0031-9155/58/16/5803.
A. M. Hasan, A. Melli, K. A. Wahid, and P. Babyn, "Denoising low-dose CT images using multiframe blind source separation and block matching filter," IEEE Transactions on Radiation and Plasma Medical Sciences, vol. 2, no. 4, pp. 279-287, 2018. https://doi.org/10.1109/TRPMS.2018.2810221.
M. Kachelriess, O. Watzke, and W. A. Kalender, "Generalized multi-dimensional adaptive filtering for conventional and spiral single-slice, multi-slice, and cone-beam CT," Medical physics, vol. 28, no. 4, pp. 475–90, 2001-Apr 2001. https://doi.org/10.1118/1.1358303.
P. J. La Riviere, "Penalized-likelihood sinogram smoothing for low-dose CT," 2005, vol. 32: John Wiley and Sons Ltd, in Medical Physics, 6 ed., pp. 1676–1683. https://doi.org/10.1118/1.1915015. [Online]. Available: https://doi.org/10.1118/1.1915015
E. Y. Sidky, C.-M. Kao, and X. Pan, "Accurate image reconstruction from few-views and limited-angle data in divergent-beam CT," Journal of X-Ray Science and Technology, vol. 14, no. 2, pp. 119-139, 2006.
J. Huang, J. Ma, N. Liu, Q. Feng, and W. Chen, "Projection data restoration guided non-local means for low-dose computed tomography reconstruction," in 2011 8th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, ISBI'11, March 30, 2011 - April 2, 2011, Chicago, IL, United states, 2011: IEEE Computer Society, in Proceedings - International Symposium on Biomedical Imaging, pp. 1167–1170. https://doi.org/10.1109/ISBI.2011.5872609. [Online]. Available: https://doi.org/10.1109/ISBI.2011.5872609
M. Aharon, M. Elad, and A. Bruckstein, "K-SVD: An algorithm for designing overcomplete dictionaries for sparse representation," IEEE Transactions on Signal Processing, vol. 54, no. 11, pp. 4311-4322, 2006. https://doi.org/10.1109/TSP.2006.881199.
P. Fumene Feruglio, C. Vinegoni, J. Gros, A. Sbarbati, and R. Weissleder, "Block matching 3D random noise filtering for absorption optical projection tomography," Physics in Medicine and Biology, vol. 55, no. 18, pp. 5401–5415, Sep 21 2010. https://doi.org/10.1088/0031-9155/55/18/009.
D. Kang et al., "Image denoising of low-radiation dose coronary CT angiography by an adaptive block-matching 3D algorithm," in Medical Imaging 2013: Image Processing, February 10, 2013 - February 12, 2013, Lake Buena Vista, FL, United states, 2013, vol. 8669: SPIE, in Progress in Biomedical Optics and Imaging - Proceedings of SPIE, pp. Aeroflex Incorporated; CREOL - Univ. Central Florida, Coll. Opt. Photonics; DQE Instruments, Inc.; Medtronic, Inc.; PIXELTEQ, Multispectral Sensing and Imaging; The Society of Photo-Optical Instrumentation Engineers (SPIE). https://doi.org/10.1117/12.2006907. [Online]. Available: https://doi.org/10.1117/12.2006907
H. Chen et al., "Low-Dose CT With a Residual Encoder-Decoder Convolutional Neural Network," Ieee Transactions on Medical Imaging, vol. 36, no. 12, pp. 2524-2535, Dec 2017. https://doi.org/10.1109/tmi.2017.2715284.
E. Kang, J. Min, and J. C. Ye, "A deep convolutional neural network using directional wavelets for low-dose X-ray CT reconstruction," Medical Physics, vol. 44, no. 10, pp. e360-e375, Oct 2017. https://doi.org/10.1002/mp.12344.
F. Fan et al., "Quadratic Autoencoder (Q-AE) for Low-Dose CT Denoising," Ieee Transactions on Medical Imaging, vol. 39, no. 6, pp. 2035-2050, Jun 2020. https://doi.org/10.1109/tmi.2019.2963248.
T. Liang, Y. Jin, Y. Li, and T. Wang, "EDCNN: Edge enhancement-based Densely Connected Network with Compound Loss for Low-Dose CT Denoising," in 15th IEEE International Conference on Signal Processing, ICSP 2020, December 6, 2020 - December 9, 2020, Virtual, Beijing, China, 2020, vol. 2020-December: Institute of Electrical and Electronics Engineers Inc., in International Conference on Signal Processing Proceedings, ICSP, pp. 193–198. https://doi.org/10.1109/ICSP48669.2020.9320928. [Online]. Available: https://doi.org/10.1109/ICSP48669.2020.9320928
M. Gholizadeh-Ansari, J. Alirezaie, and P. Babyn, "Low-dose CT Denoising with Dilated Residual Network," in 40th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2018, July 18, 2018 - July 21, 2018, Honolulu, HI, United states, 2018, vol. 2018-July: Institute of Electrical and Electronics Engineers Inc., in Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBS, pp. 5117–5120. https://doi.org/10.1109/EMBC.2018.8513453. [Online]. Available: https://doi.org/10.1109/EMBC.2018.8513453
X. Jiang, L. Wang, Z. He, and J. Du, "Learning a Frequency Separation Network with Hybrid Convolution and Adaptive Aggregation for Low-dose CT Denoising," in 2021 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2021, December 9, 2021 - December 12, 2021, Virtual, Online, United states, 2021: Institute of Electrical and Electronics Engineers Inc., in Proceedings - 2021 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2021, pp. 919–925. https://doi.org/10.1109/BIBM52615.2021.9669891. [Online]. Available: https://doi.org/10.1109/BIBM52615.2021.9669891
J. M. Wolterink, T. Leiner, M. A. Viergever, and I. Igum, "Generative adversarial networks for noise reduction in low-dose CT," IEEE Transactions on Medical Imaging, vol. 36, no. 12, pp. 2536-2545, 2017. https://doi.org/10.1109/TMI.2017.2708987.
C. You et al., "Structurally-Sensitive Multi-Scale Deep Neural Network for Low-Dose CT Denoising," Ieee Access, vol. 6, pp. 41839–41855, 2018 2018. https://doi.org/10.1109/access.2018.2858196.
Q. Yang et al., "Low-Dose CT Image Denoising Using a Generative Adversarial Network With Wasserstein Distance and Perceptual Loss," Ieee Transactions on Medical Imaging, vol. 37, no. 6, pp. 1348-1357, Jun 2018. https://doi.org/10.1109/tmi.2018.2827462.
M. Li, W. Hsu, X. Xie, J. Cong, and W. Gao, "SACNN: Self-Attention Convolutional Neural Network for Low-Dose CT Denoising With Self-Supervised Perceptual Loss Network," Ieee Transactions on Medical Imaging, vol. 39, no. 7, pp. 2289-2301, Jul 2020. https://doi.org/10.1109/tmi.2020.2968472.
M. Geng et al., "Content-Noise Complementary Learning for Medical Image Denoising," Ieee Transactions on Medical Imaging, vol. 41, no. 2, pp. 407-419, Feb 2022. https://doi.org/10.1109/tmi.2021.3113365.
Z. Han, H. Shangguan, X. Zhang, P. Zhang, X. Cui, and H. Ren, "A Dual-Encoder-Single-Decoder Based Low-Dose CT Denoising Network," Ieee Journal of Biomedical and Health Informatics, vol. 26, no. 7, pp. 3251-3260, Jul 2022. https://doi.org/10.1109/jbhi.2022.3155788.
D. Wang, F. Fan, Z. Wu, R. Liu, F. Wang, and H. Yu, "CTformer: Convolution-free Token2Token Dilated Vision Transformer for Low-dose CT Denoising," arXiv preprint arXiv:2202.13517, 2022.
S. W. Zamir et al., "Multi-Stage Progressive Image Restoration," in 2021 IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR), 20–25 June 2021 2021, pp. 14816–14826. https://doi.org/10.1109/CVPR46437.2021.01458.
C. H. McCollough et al., "Low-dose CT for the detection and classification of metastatic liver lesions: Results of the 2016 Low Dose CT Grand Challenge," Medical Physics, vol. 44, no. 10, pp. e339-e352, 2017. https://doi.org/10.1002/mp.12345.
D. Gaio et al., "A large-scale metagenomic survey dataset of the post-weaning piglet gut lumen," Gigascience, vol. 10, no. 6, Jun 2021, Art no. giab039. https://doi.org/10.1093/gigascience/giab039.
F. Yu and V. Koltun, "Multi-scale context aggregation by dilated convolutions," in 4th International Conference on Learning Representations, ICLR 2016, May 2, 2016 - May 4, 2016, San Juan, Puerto rico, 2016: International Conference on Learning Representations, ICLR, in 4th International Conference on Learning Representations, ICLR 2016 - Conference Track Proceedings.
J. Hu, L. Shen, S. Albanie, G. Sun, and E. Wu, "Squeeze-and-Excitation Networks," IEEE transactions on pattern analysis and machine intelligence, vol. 42, no. 8, pp. 2011–2023, 2020–08 2020. https://doi.org/10.1109/tpami.2019.2913372.
S. Woo, J. Park, J.-Y. Lee, and I. S. Kweon, "CBAM: Convolutional block attention module," arXiv, 2018.
H. Zhao, O. Gallo, I. Frosio, and J. Kautz, "Loss Functions for Image Restoration With Neural Networks," IEEE Transactions on Computational Imaging, vol. 3, no. 1, pp. 47-57, 2017. https://doi.org/10.1109/TCI.2016.2644865.
S. W. Zamir et al., "Multi-stage progressive image restoration," in 2021 IEEE/CVF Conference on Computer Vision and Pattern Recognition, CVPR 2021, June 19, 2021 - June 25, 2021, Virtual, Online, United states, 2021: IEEE Computer Society, in Proceedings of the IEEE Computer Society Conference on Computer Vision and Pattern Recognition, pp. 14816–14826. https://doi.org/10.1109/CVPR46437.2021.01458. [Online]. Available: https://doi.org/10.1109/CVPR46437.2021.01458
D. P. Kingma and J. L. Ba, "Adam: A method for stochastic optimization," in 3rd International Conference on Learning Representations, ICLR 2015, May 7, 2015 - May 9, 2015, San Diego, CA, United states, 2015: International Conference on Learning Representations, ICLR, in 3rd International Conference on Learning Representations, ICLR 2015 - Conference Track Proceedings.
E. Kang, and J. C. Ye, "Wavelet domain residual network (WavResNet) for low-dose X-ray CT reconstruction," arXiv preprint arXiv:1703.01383 (2017).
P. Isola, J.-Y. Zhu, T. Zhou, and A. A. Efros, "Image-to-image translation with conditional adversarial networks," in 30th IEEE Conference on Computer Vision and Pattern Recognition, CVPR 2017, July 21, 2017 - July 26, 2017, Honolulu, HI, United states, 2017, vol. 2017-January: Institute of Electrical and Electronics Engineers Inc., in Proceedings - 30th IEEE Conference on Computer Vision and Pattern Recognition, CVPR 2017, pp. 5967–5976. https://doi.org/10.1109/CVPR.2017.632. [Online]. Available: https://doi.org/10.1109/CVPR.2017.632
Z. Wang, A. C. Bovik, H. R. Sheikh, and E. P. Simoncelli, "Image quality assessment: from error visibility to structural similarity," IEEE transactions on image processing : a publication of the IEEE Signal Processing Society, vol. 13, no. 4, pp. 600–12, 2004-Apr 2004. https://doi.org/10.1109/tip.2003.819861.
W. Xue, L. Zhang, X. Mou, and A. C. Bovik, "Gradient Magnitude Similarity Deviation: A Highly Efficient Perceptual Image Quality Index," Ieee Transactions on Image Processing, vol. 23, no. 2, pp. 684-695, Feb 2014. https://doi.org/10.1109/tip.2013.2293423.
L. Zhang, L. Zhang, X. Mou, and D. Zhang, "FSIM: A Feature Similarity Index for Image Quality Assessment," Ieee Transactions on Image Processing, vol. 20, no. 8, pp. 2378-2386, Aug 2011. https://doi.org/10.1109/tip.2011.2109730.
H. R. Sheikh and A. C. Bovik, "Image information and visual quality," IEEE transactions on image processing : a publication of the IEEE Signal Processing Society, vol. 15, no. 2, pp. 430–44, 2006-Feb 2006. https://doi.org/10.1109/tip.2005.859378.
Funding
We would like to thank the editors and reviewers for their reviews that improved the content of this paper. This work was funded by the Science and Technology Innovation Project of Colleges and Universities of Shanxi Province (2020L0282); the Open Fund Project of Key Laboratory of Computer Network and Information Integration, Ministry of Education(K93-9–2022-02); the Postgraduate Education Innovation Project of Shanxi Province (2022Y582).
Author information
Authors and Affiliations
Contributions
All authors contributed to the study conception and design. Material preparation, data collection, and analysis were performed by Zhiyuan Li and Yi Liu. The first draft of the manuscript was written by Zhiyuan Li and all authors commented on previous versions of the manuscript. All authors read and approved the final manuscript.
Corresponding author
Ethics declarations
Conflict of Interest
The authors declare no competing interests.
Additional information
Publisher's Note
Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.
Rights and permissions
Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law.
About this article
Cite this article
Li, Z., Liu, Y., Shu, H. et al. Multi-Scale Feature Fusion Network for Low-Dose CT Denoising. J Digit Imaging 36, 1808–1825 (2023). https://doi.org/10.1007/s10278-023-00805-0
Received:
Revised:
Accepted:
Published:
Issue Date:
DOI: https://doi.org/10.1007/s10278-023-00805-0