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Comparative Genomics

RECOMB 2007, International Workshop, RECOMB-CG 2007, San Diego, CA, USA, September 16-18, 2007, Proceedings

  • Conference proceedings
  • © 2007

Overview

Editors:
  1. Glenn Tesler
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  2. Dannie Durand
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Part of the book series: Lecture Notes in Computer Science (LNCS, volume 4751)

Part of the book sub series: Lecture Notes in Bioinformatics (LNBI)

Included in the following conference series:

Conference proceedings info: RECOMB-CG 2007.

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Table of contents (14 papers)

  1. Front Matter

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  2. Multi-break Rearrangements: From Circular to Linear Genomes

    • Max A. Alekseyev
    Pages 1-15

  3. A Pseudo-boolean Programming Approach for Computing the Breakpoint Distance Between Two Genomes with Duplicate Genes

    • Sébastien Angibaud, Guillaume Fertin, Irena Rusu, Annelyse Thévenin, Stéphane Vialette
    Pages 16-29

  4. Improving Inversion Median Computation Using Commuting Reversals and Cycle Information

    • William Arndt, Jijun Tang
    Pages 30-44

  5. Inferring a Duplication, Speciation and Loss History from a Gene Tree (Extended Abstract)

    • Cedric Chauve, Jean-Philippe Doyon, Nadia El-Mabrouk
    Pages 45-57

  6. How to Achieve an Equivalent Simple Permutation in Linear Time

    • Simon Gog, Martin Bader
    Pages 58-68

  7. Baculovirus Phylogeny Based on Genome Rearrangements

    • Daniel Goodman, Noah Ollikainen, Chris Sholley
    Pages 69-82

  8. Learning Gene Regulatory Networks via Globally Regularized Risk Minimization

    • Yuhong Guo, Dale Schuurmans
    Pages 83-95

  9. Evolution of Tandemly Arrayed Genes in Multiple Species

    • Mathieu Lajoie, Denis Bertrand, Nadia El-Mabrouk
    Pages 96-109

  10. Selecting Genomes for Reconstruction of Ancestral Genomes

    • Guoliang Li, Jian Ma, Louxin Zhang
    Pages 110-121

  11. A Heuristic Algorithm for Reconstructing Ancestral Gene Orders with Duplications

    • Jian Ma, Aakrosh Ratan, Louxin Zhang, Webb Miller, David Haussler
    Pages 122-135

  12. Reconstructing an Inversion History in the Anopheles Gambiae Complex

    • Ai Xia, Maria V. Sharakhova, Igor V. Sharakhov
    Pages 136-148

  13. Recovering True Rearrangement Events on Phylogenetic Trees

    • Hao Zhao, Guillaume Bourque
    Pages 149-161

  14. Parts of the Problem of Polyploids in Rearrangement Phylogeny

    • Chunfang Zheng, Qian Zhu, David Sankoff
    Pages 162-176

  15. A Rigorous Analysis of the Pattern of Intron Conservation Supports the Coelomata Clade of Animals

    • Jie Zheng, Igor B. Rogozin, Eugene V. Koonin, Teresa M. Przytycka
    Pages 177-191

  16. Back Matter

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