[go: up one dir, main page]
More Web Proxy on the site http://driver.im/
Skip to main content

Can Word Embedding Help Term Mismatch Problem? – A Result Analysis on Clinical Retrieval Tasks

  • Conference paper
  • First Online:
Transforming Digital Worlds (iConference 2018)

Part of the book series: Lecture Notes in Computer Science ((LNISA,volume 10766))

Included in the following conference series:

Abstract

Clinical Decision Support (CDS) systems assist doctors to make clinical decisions by searching for medical literature based on patients’ medical records. Past studies showed that correctly predicting patient’s diagnosis can significantly increase the performance of such clinical retrieval systems. However, our studies showed that there are still a large portion of relevant documents ranked very low due to term mismatch problem. Different to other retrieval tasks, queries issued to this clinical retrieval system have already been expanded with the most informative terms for disease prediction. It is therefore a great challenge for traditional Pseudo Relevance Feedback (PRF) methods to incorporate new informative terms from top K pseudo relevant documents. Consequently, we explore in this paper word embedding for obtaining further improvements because the word vectors were all trained on much larger collections and they can identify words that are used in similar contexts. Our study utilized test collections from the CDS track in TREC 2015, trained on 2014 data. Experiment results show that word embedding can significantly improve retrieval performance, and term mismatch problem can be largely resolved, particularly for the low ranked relevant documents. However, for highly ranked documents with less term mismatching problem, word emending’s improvement can also be replaced by a traditional language model.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Subscribe and save

Springer+ Basic
£29.99 /Month
  • Get 10 units per month
  • Download Article/Chapter or eBook
  • 1 Unit = 1 Article or 1 Chapter
  • Cancel anytime
Subscribe now

Buy Now

Chapter
GBP 19.95
Price includes VAT (United Kingdom)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
GBP 103.50
Price includes VAT (United Kingdom)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
GBP 129.99
Price includes VAT (United Kingdom)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Similar content being viewed by others

References

  1. Roberts, K., et al.: Overview of the TREC 2016 clinical decision support track. In: TREC (2016)

    Google Scholar 

  2. Limsopatham, N., et al.: Modelling the usefulness of document collections for query expansion in patient search. In: Proceedings of the 24th ACM International on Conference on Information and Knowledge Management. ACM (2015)

    Google Scholar 

  3. Zhang, D., He, D.: Enhancing clinical decision support systems with public knowledge bases. Data Inf. Manag. 1, 49–60 (2017)

    Google Scholar 

  4. Zhang, D., et al.: Wikipedia-based automatic diagnosis prediction in clinical decision support systems. In: iConference 2017 Proceedings (2017)

    Google Scholar 

  5. Zhou, G., et al.: Learning continuous word embedding with metadata for question retrieval in community question answering. In: ACL, vol. 1 (2015)

    Google Scholar 

  6. Ganguly, D., et al.: Word embedding based generalized language model for information retrieval. In: Proceedings of the 38th International ACM SIGIR Conference on Research and Development in Information Retrieval. ACM (2015)

    Google Scholar 

  7. Carpineto, C., Romano, G.: A survey of automatic query expansion in information retrieval. ACM Comput. Surv. (CSUR) 44(1) (2012)

    Google Scholar 

  8. Choi, S., Choi, J.: SNUMedinfo at TREC CDS track 2014: medical case-based retrieval task. Seoul National Univ (Republic of Korea) (2014)

    Google Scholar 

  9. Balaneshin-kordan, S., Kotov, A., Xisto, R.: WSU-IR at TREC 2015 clinical decision support track: joint weighting of explicit and latent medical query concepts from diverse sources. In: Proceedings of the 2015 Text Retrieval Conference (2015)

    Google Scholar 

  10. Gurulingappa, H., et al.: Semi-supervised information retrieval system for clinical decision support. In: TREC (2016)

    Google Scholar 

  11. Mitra, B., et al.: A dual embedding space model for document ranking. arXiv preprint arXiv:1602.01137 (2016)

  12. Lv, Y., Zhai, C.X.: A comparative study of methods for estimating query language models with pseudo feedback. In: Proceedings of the 18th ACM Conference on Information and Knowledge Management. ACM (2009)

    Google Scholar 

  13. Pyysalo, S., Ginter, F., Moen, H., Salakoski, T., Ananiadou, S.: Distributional semantics resources for biomedical text processing (2013)

    Google Scholar 

  14. Balaneshin-Kordan, S., Kotov, A., Xisto, R.: WSU-IR at TREC 2015 clinical decision support track: joint weighting of explicit and latent medical query concepts from diverse sources. Wayne State University, Detroit, US (2015)

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Daqing He .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2018 Springer International Publishing AG, part of Springer Nature

About this paper

Check for updates. Verify currency and authenticity via CrossMark

Cite this paper

Zhang, D., He, D. (2018). Can Word Embedding Help Term Mismatch Problem? – A Result Analysis on Clinical Retrieval Tasks. In: Chowdhury, G., McLeod, J., Gillet, V., Willett, P. (eds) Transforming Digital Worlds. iConference 2018. Lecture Notes in Computer Science(), vol 10766. Springer, Cham. https://doi.org/10.1007/978-3-319-78105-1_44

Download citation

  • DOI: https://doi.org/10.1007/978-3-319-78105-1_44

  • Published:

  • Publisher Name: Springer, Cham

  • Print ISBN: 978-3-319-78104-4

  • Online ISBN: 978-3-319-78105-1

  • eBook Packages: Computer ScienceComputer Science (R0)

Publish with us

Policies and ethics