Abstract
We present a novel approach to learn logical formulae characterising the emergent behaviour of a dynamical system from system observations. At a high level, the approach starts by devising a data-driven statistical abstraction of the system. We then propose general optimisation strategies for selecting formulae with high satisfaction probability, either within a discrete set of formulae of bounded complexity, or a parametric family of formulae. We illustrate and apply the methodology on two real world case studies: characterising the dynamics of a biological circadian oscillator, and discriminating different types of cardiac malfunction from electro-cardiogram data. Our results demonstrate that this approach provides a statistically principled and generally usable tool to logically characterise dynamical systems in terms of temporal logic formulae.
L.B. acknowledges partial support from the EU-FET project QUANTICOL (nr. 600708) and by FRA-UniTS. G.S. acknowledges support from the ERC under grant MLCS306999. E.B. acknowledges the support of the Austrian FFG project HARMONIA (nr. 845631).
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
Preview
Unable to display preview. Download preview PDF.
Similar content being viewed by others
References
Akaike, H.: A new look at the statistical model identification. IEEE Trans. Aut. Control 19(6), 716–723 (1974)
Allen, J.B.: Short term spectral analysis, synthesis, and modification by discrete fourier transform. IEEE Transactions on Acoustics, Speech, and Signal Processing 3, 235–238
Alur, R., Feder, T., Henzinger, T.A.: The benefits of relaxing punctuality. J. ACM 43(1), 116–146 (1996)
Asarin, E., Donzé, A., Maler, O., Nickovic, D.: Parametric Identification of Temporal Properties. In: Khurshid, S., Sen, K. (eds.) RV 2011. LNCS, vol. 7186, pp. 147–160. Springer, Heidelberg (2012)
Bartocci, E., Bortolussi, L., Nenzi, L., Sanguinetti, G.: On the robustness of temporal properties for stochastic models. In: Proc. of HSB 2013, pp. 3–19 (2013)
Bartocci, E., Corradini, F., Di Berardini, M.R., Smolka, S.A., Grosu, R.: Modeling and simulation of cardiac tissue using hybrid I/O automata. Theor. Comput. Sci. 410(33-34), 3149–3165 (2009)
Bartocci, E., Grosu, R., Karmarkar, A., Smolka, S.A., Stoller, S.D., Zadok, E., Seyster, J.: Adaptive runtime verification. In: Qadeer, S., Tasiran, S. (eds.) RV 2012. LNCS, vol. 7687, pp. 168–182. Springer, Heidelberg (2013)
Bishop, C.M.: Pattern Recognition and Machine Learning. Springer (2006)
Bortolussi, L., Sanguinetti, G.: Learning and Designing Stochastic Processes from Logical Constraints. In: Joshi, K., Siegle, M., Stoelinga, M., D’Argenio, P.R. (eds.) QEST 2013. LNCS, vol. 8054, pp. 89–105. Springer, Heidelberg (2013)
Calzone, L., Chabrier-Rivier, N., Fages, F., Soliman, S.: Machine learning biochemical networks from temporal logic properties. In: Priami, C., Plotkin, G. (eds.) Trans. on Comp. Sys. Bio. VI. LNCS (LNBI), vol. 4220, pp. 68–94. Springer, Heidelberg (2006)
Chen, T., Diciolla, M., Kwiatkowska, M., Mereacre, A.: Time-bounded verification of CTMCs against real-time specifications. In: Fahrenberg, U., Tripakis, S. (eds.) FORMATS 2011. LNCS, vol. 6919, pp. 26–42. Springer, Heidelberg (2011)
Donzé, A., Maler, O., Bartocci, E., Nickovic, D., Grosu, R., Smolka, S.A.: On temporal logic and signal processing. In: Chakraborty, S., Mukund, M. (eds.) ATVA 2012. LNCS, vol. 7561, pp. 92–106. Springer, Heidelberg (2012)
Georgoulas, A., Clark, A., Ocone, A., Gilmore, S., Sanguinetti, G.: A subsystems approach for parameter estimation of ode models of hybrid systems. In: Proc. of HSB 2012. EPTCS, vol. 92 (2012)
Grosu, R., Smolka, S.A., Corradini, F., Wasilewska, A., Entcheva, E., Bartocci, E.: Learning and detecting emergent behavior in networks of cardiac myocytes. Commun. ACM 52(3), 97–105 (2009)
Jha, S.K., Clarke, E.M., Langmead, C.J., Legay, A., Platzer, A., Zuliani, P.: A Bayesian approach to model checking biological systems. In: Degano, P., Gorrieri, R. (eds.) CMSB 2009. LNCS, vol. 5688, pp. 218–234. Springer, Heidelberg (2009)
Kalajdzic, K., Bartocci, E., Smolka, S.A., Stoller, S.D., Grosu, R.: Runtime Verification with Particle Filtering. In: Legay, A., Bensalem, S. (eds.) RV 2013. LNCS, vol. 8174, pp. 149–166. Springer, Heidelberg (2013)
Kong, Z., Jones, A., Ayala, A.M., Gol, E.A., Belta, C.: Temporal Logic Inference for Classification and Prediction from Data. In: Proc. of HSCC 2014, pp. 273–282. ACM (2014)
Lee, C., Chen, F., Roşu, G.: Mining parametric specifications. In: Proc. of ICSE 2011, pp. 591–600. ACM (2011)
Maler, O., Nickovic, D.: Monitoring temporal properties of continuous signals. In: Lakhnech, Y., Yovine, S. (eds.) FORMATS/FTRTFT 2004. LNCS, vol. 3253, pp. 152–166. Springer, Heidelberg (2004)
Moody, G.B., Mark, R.G.: The impact of the MIT-BIH arrhythmia database. IEEE Eng. Med. Biol. Mag. 20(3), 45–50 (2001)
Ocone, A., Millar, A.J., Sanguinetti, G.: Hybrid regulatory models: a statistically tractable approach to model regulatory network dynamics. Bioinformatics 29(7), 910–916 (2013)
Pnueli, A.: The temporal logic of programs. In: IEEE Annual Symposium on Foundations of Computer Science, pp. 46–57 (1977)
Rabiner, L.R.: A tutorial on hidden Markov models and selected applications in speech recognition. Proceedings of the IEEE 77(2), 257–286 (1989)
Rasmussen, C.E., Williams, C.K.I.: Gaussian Processes for Machine Learning. MIT Press (2006)
Srinivas, N., Krause, A., Kakade, S.M., Seeger, M.W.: Information-theoretic regret bounds for gaussian process optimization in the bandit setting. IEEE Transactions on Information Theory 58(5), 3250–3265 (2012)
Stoller, S.D., Bartocci, E., Seyster, J., Grosu, R., Havelund, K., Smolka, S.A., Zadok, E.: Runtime Verification with State Estimation. In: Khurshid, S., Sen, K. (eds.) RV 2011. LNCS, vol. 7186, pp. 193–207. Springer, Heidelberg (2012)
Xiaoqing, J., Donzé, A., Deshmukh, J.V., Seshia, S.A.: Mining Requirements from Closed-loop Control Models. In: Proc. of HSCC 2013, pp. 43–52. ACM (2013)
Yang, H., Hoxha, B., Fainekos, G.: Querying Parametric Temporal Logic Properties on Embedded Systems. In: Nielsen, B., Weise, C. (eds.) ICTSS 2012. LNCS, vol. 7641, pp. 136–151. Springer, Heidelberg (2012)
Author information
Authors and Affiliations
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2014 Springer International Publishing Switzerland
About this paper
Cite this paper
Bartocci, E., Bortolussi, L., Sanguinetti, G. (2014). Data-Driven Statistical Learning of Temporal Logic Properties. In: Legay, A., Bozga, M. (eds) Formal Modeling and Analysis of Timed Systems. FORMATS 2014. Lecture Notes in Computer Science, vol 8711. Springer, Cham. https://doi.org/10.1007/978-3-319-10512-3_3
Download citation
DOI: https://doi.org/10.1007/978-3-319-10512-3_3
Publisher Name: Springer, Cham
Print ISBN: 978-3-319-10511-6
Online ISBN: 978-3-319-10512-3
eBook Packages: Computer ScienceComputer Science (R0)