Abstract
It has been observed that the sample mean of certain probability distributions in Billera-Holmes-Vogtmann (BHV) phylogenetic spaces is confined to a lower-dimensional subspace for large enough sample size. This non-standard behavior has been called stickiness and poses difficulties in statistical applications when comparing samples of sticky distributions. We extend previous results on stickiness to show the equivalence of this sampling behavior to topological conditions in the special case of BHV spaces. Furthermore, we propose to alleviate statistical comparision of sticky distributions by including the directional derivatives of the Fréchet function: the degree of stickiness.
Supported by DFG GK 2088 and DFG HU 1575/7.
References
Bacák, M.: Convex analysis and optimization in Hadamard spaces: De Gruyter (2014). https://doi.org/10.1515/9783110361629
Barden, D., Le, H., Owen, M.: Limiting behaviour of fréchet means in the space of phylogenetic trees (2014). https://doi.org/10.48550/ARXIV.1409.7602
Barden, D.M., Le, H.: The logarithm map, its limits and fréchet means in orthant spaces. Proc. London Mathem. Soc. 117 (2018)
Billera, L.J., Holmes, S.P., Vogtmann, K.: Geometry of the space of phylogenetic trees. Adv. Appl. Math. 27(4), 733–767 (2001)
Bridson, M., Häfliger, A.: Metric Spaces of Non-Positive Curvature. Grundlehren der mathematischen Wissenschaften. Springer, Berlin Heidelberg (2011). https://doi.org/10.1007/978-3-662-12494-9
Burago, D., Burago, Y., Ivanov, S.: A Course in Metric Geometry. In: Crm Proceedings & Lecture Notes. American Mathematical Society (2001)
Durrett, R.: Probability: Theory and Examples. Cambridge Series in Statistical and Probabilistic Mathematics. Cambridge University Press (2019). https://books.google.de/books?id=b22MDwAAQBAJ
Hotz, T., et al.: Sticky central limit theorems on open books. Annals Appli. Probability 23(6) (2013). https://doi.org/10.1214/12-aap899
Huckemann, S., Mattingly, J.C., Miller, E., Nolen, J.: Sticky central limit theorems at isolated hyperbolic planar singularities (2015)
Lammers, L., Van, D.T., Huckemann, S.F.: Types of stickiness, their degree and applications (2023), manuscript
Owen, M., Provan, J.S.: A fast algorithm for computing geodesic distances in tree space (2009). https://doi.org/10.48550/ARXIV.0907.3942
Shu, K., Ortegaray, A., Berwick, R., Marcolli, M.: Phylogenetics of indo-european language families via an algebro-geometric analysis of their syntactic structures (2019)
Sturm, K.T.: Probability measures on metric spaces of nonpositive curvature. Contemp. Math. 338 (2003). https://doi.org/10.1090/conm/338/06080
Villani, C.: Optimal Transport: Old and New. Grundlehren der mathematischen Wissenschaften. Springer, Berlin Heidelberg (2008). https://doi.org/10.1007/978-3-540-71050-9
Williams, T.A., Foster, P.G., Nye, T.M.W., Cox, C.J., Embley, T.M.: A congruent phylogenomic signal places eukaryotes within the archaea. Proc. Royal Soc. B: Biolog. Sci. 279, 4870–4879 (2012)
Acknowledgements
The 1st author gratefully acknowledges the DFG RTG 2088. The 2dn author gratefully acknowledges the DFG HU 1575/7. The 3rd author gratefully acknowledge the DFG CRC 1456. The work was done partially while the 2nd author was participating in the program of the Institute for Mathematical Sciences, National University of Singapore, in 2022.
Author information
Authors and Affiliations
Corresponding author
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2023 The Author(s), under exclusive license to Springer Nature Switzerland AG
About this paper
Cite this paper
Lammers, L., Van, D.T., Nye, T.M.W., Huckemann, S.F. (2023). Types of Stickiness in BHV Phylogenetic Tree Spaces and Their Degree. In: Nielsen, F., Barbaresco, F. (eds) Geometric Science of Information. GSI 2023. Lecture Notes in Computer Science, vol 14071. Springer, Cham. https://doi.org/10.1007/978-3-031-38271-0_35
Download citation
DOI: https://doi.org/10.1007/978-3-031-38271-0_35
Published:
Publisher Name: Springer, Cham
Print ISBN: 978-3-031-38270-3
Online ISBN: 978-3-031-38271-0
eBook Packages: Computer ScienceComputer Science (R0)