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Types of Stickiness in BHV Phylogenetic Tree Spaces and Their Degree

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Geometric Science of Information (GSI 2023)

Part of the book series: Lecture Notes in Computer Science ((LNCS,volume 14071))

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Abstract

It has been observed that the sample mean of certain probability distributions in Billera-Holmes-Vogtmann (BHV) phylogenetic spaces is confined to a lower-dimensional subspace for large enough sample size. This non-standard behavior has been called stickiness and poses difficulties in statistical applications when comparing samples of sticky distributions. We extend previous results on stickiness to show the equivalence of this sampling behavior to topological conditions in the special case of BHV spaces. Furthermore, we propose to alleviate statistical comparision of sticky distributions by including the directional derivatives of the Fréchet function: the degree of stickiness.

Supported by DFG GK 2088 and DFG HU 1575/7.

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References

  1. Bacák, M.: Convex analysis and optimization in Hadamard spaces: De Gruyter (2014). https://doi.org/10.1515/9783110361629

  2. Barden, D., Le, H., Owen, M.: Limiting behaviour of fréchet means in the space of phylogenetic trees (2014). https://doi.org/10.48550/ARXIV.1409.7602

  3. Barden, D.M., Le, H.: The logarithm map, its limits and fréchet means in orthant spaces. Proc. London Mathem. Soc. 117 (2018)

    Google Scholar 

  4. Billera, L.J., Holmes, S.P., Vogtmann, K.: Geometry of the space of phylogenetic trees. Adv. Appl. Math. 27(4), 733–767 (2001)

    Article  MathSciNet  MATH  Google Scholar 

  5. Bridson, M., Häfliger, A.: Metric Spaces of Non-Positive Curvature. Grundlehren der mathematischen Wissenschaften. Springer, Berlin Heidelberg (2011). https://doi.org/10.1007/978-3-662-12494-9

  6. Burago, D., Burago, Y., Ivanov, S.: A Course in Metric Geometry. In: Crm Proceedings & Lecture Notes. American Mathematical Society (2001)

    Google Scholar 

  7. Durrett, R.: Probability: Theory and Examples. Cambridge Series in Statistical and Probabilistic Mathematics. Cambridge University Press (2019). https://books.google.de/books?id=b22MDwAAQBAJ

  8. Hotz, T., et al.: Sticky central limit theorems on open books. Annals Appli. Probability 23(6) (2013). https://doi.org/10.1214/12-aap899

  9. Huckemann, S., Mattingly, J.C., Miller, E., Nolen, J.: Sticky central limit theorems at isolated hyperbolic planar singularities (2015)

    Google Scholar 

  10. Lammers, L., Van, D.T., Huckemann, S.F.: Types of stickiness, their degree and applications (2023), manuscript

    Google Scholar 

  11. Owen, M., Provan, J.S.: A fast algorithm for computing geodesic distances in tree space (2009). https://doi.org/10.48550/ARXIV.0907.3942

  12. Shu, K., Ortegaray, A., Berwick, R., Marcolli, M.: Phylogenetics of indo-european language families via an algebro-geometric analysis of their syntactic structures (2019)

    Google Scholar 

  13. Sturm, K.T.: Probability measures on metric spaces of nonpositive curvature. Contemp. Math. 338 (2003). https://doi.org/10.1090/conm/338/06080

  14. Villani, C.: Optimal Transport: Old and New. Grundlehren der mathematischen Wissenschaften. Springer, Berlin Heidelberg (2008). https://doi.org/10.1007/978-3-540-71050-9

  15. Williams, T.A., Foster, P.G., Nye, T.M.W., Cox, C.J., Embley, T.M.: A congruent phylogenomic signal places eukaryotes within the archaea. Proc. Royal Soc. B: Biolog. Sci. 279, 4870–4879 (2012)

    Article  Google Scholar 

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Acknowledgements

The 1st author gratefully acknowledges the DFG RTG 2088. The 2dn author gratefully acknowledges the DFG HU 1575/7. The 3rd author gratefully acknowledge the DFG CRC 1456. The work was done partially while the 2nd author was participating in the program of the Institute for Mathematical Sciences, National University of Singapore, in 2022.

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Correspondence to Lars Lammers .

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Lammers, L., Van, D.T., Nye, T.M.W., Huckemann, S.F. (2023). Types of Stickiness in BHV Phylogenetic Tree Spaces and Their Degree. In: Nielsen, F., Barbaresco, F. (eds) Geometric Science of Information. GSI 2023. Lecture Notes in Computer Science, vol 14071. Springer, Cham. https://doi.org/10.1007/978-3-031-38271-0_35

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  • DOI: https://doi.org/10.1007/978-3-031-38271-0_35

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  • Publisher Name: Springer, Cham

  • Print ISBN: 978-3-031-38270-3

  • Online ISBN: 978-3-031-38271-0

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