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COVID-19 Diagnosis in 3D Chest CT Scans with Attention-Based Models

  • Conference paper
  • First Online:
Artificial Intelligence in Medicine (AIME 2023)

Part of the book series: Lecture Notes in Computer Science ((LNAI,volume 13897))

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Abstract

The three-dimensional information in CT scans reveals notorious findings in the medical context, also for detecting symptoms of COVID-19 in chest CT scans. However, due to the lack of availability of large-scale datasets in 3D, the use of attention-based models in this field is proven to be difficult. With transfer learning, this work tackles this problem, investigating the performance of a pre-trained TimeSformer model, which was originally developed for video classification, on COVID-19 classification of three-dimensional chest CT scans. The attention-based model outperforms a DenseNet baseline. Furthermore, we propose three new attention schemes for TimeSformer improving the accuracy of the model by 1.5% and reducing runtime by almost 25% compared to the original attention scheme.

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References

  1. Ardakani, A.A., Kanafi, A.R., Acharya, U.R., Khadem, N., Mohammadi, A.: Application of deep learning technique to manage covid- 19 in routine clinical practice using CT images: results of 10 convolutional neural networks. Computers in biology and medicine 121 (2020)

    Google Scholar 

  2. Bertasius, G., Wang, H., Torresani, L.: Is space-time attention all you need for video understanding? In: ICML, vol. 2, p. 4 (2021)

    Google Scholar 

  3. Dosovitskiy, A., Beyer, L., Kolesnikov, A., et al.: An image is worth 16x16 words: transformers for image recognition at scale. arXiv preprint arXiv:2010.11929 (2020)

  4. He, K., Zhang, X., Ren, S., Sun, J.: Deep residual learning for image recognition. In: Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition, pp. 770–778 (2016)

    Google Scholar 

  5. He, X., et al.: Benchmarking deep learning models and automated model design for covid-19 detection with chest CT scans. MedRxiv (2021)

    Google Scholar 

  6. Hatamizadeh, A., Tang, Y., Nath, V., et al.: Unetr: transformers for 3D medical image segmentation. In: Proceedings of the IEEE/CVF Winter Conference on Applications of Computer Vision, pp. 574–584 (2022)

    Google Scholar 

  7. Hsu, C.-C., Chen, G.-L., Wu, M.-H.: Visual transformer with statistical test for covid-19 classification. arXiv preprint arXiv:2107.05334 (2021)

  8. Huang, G., Liu, Z., Van Der Maaten, L., Weinberger, K.Q.: Densely connected convolutional networks. In: Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition, pp. 4700–4708 (2017)

    Google Scholar 

  9. Kollias, D., Arsenos, A., Soukissian, L., Kollias, S.: Mia-cov19d: Covid-19 detection through 3-D chest CT image analysis. In: Proceedings of the IEEE/CVF International Conference on Computer Vision, pp. 537–544 (2021)

    Google Scholar 

  10. Li, L., Qin, L., Xu, Z., et al.: Using artificial intelligence to detect COVID-19 and community-acquired pneumonia based on pulmonary CT: evaluation of the diagnostic accuracy. Radiology 296(2), 65–71 (2020)

    Article  Google Scholar 

  11. Mishra, A.K., Das, S.K., Roy, P.: Bandyopadhyay, S.: Identifying covid19 from chest CT images: a deep convolutional neural networks based approach. J. Healthcare Eng. (2020)

    Google Scholar 

  12. Pham, T.D.: A comprehensive study on classification of COVID-19 on computed tomography with pretrained convolutional neural networks. Sci. Rep. 10(1), 1–8 (2020)

    Article  Google Scholar 

  13. Shakouri, S., et al.: Covid19-CT-dataset: an open-access chest CT image repository of 1000+ patients with confirmed covid-19 diagnosis. BMC Res Notes (2021)

    Google Scholar 

  14. Shamshad, F., et al.: Transformers in medical imaging: a survey. arXiv preprint arXiv:2201.09873 (2022)

  15. Shin, Y., Eo, T., Rha, H., et al.: Digestive Organ Recognition in Video Capsule Endoscopy Based on Temporal Segmentation Network. In: Wang, L., Dou, Q., Fletcher, P.T., Speidel, S., Li, S. (eds.) MICCAI 2022. LNCS, vol. 13437, pp. 136–146. Springer, Cham (2022). https://doi.org/10.1007/978-3-031-16449-1_14

  16. Woolson, R.F.: Wilcoxon signed-rank test. Wiley encyclopedia of clinical trials, 1–3 (2007)

    Google Scholar 

  17. Zhang, K., Liu, X., Shen, J., et al.: Clinically applicable AI system for accurate diagnosis, quantitative measurements, and prognosis of covid-19 pneumonia using computed tomography. Cell 181(6), 1423–1433 (2020)

    Article  Google Scholar 

  18. Zhang, L., Wen, Y.: A transformer-based framework for automatic covid19 diagnosis in chest CTs. In: Proceedings of the IEEE/CVF International Conference on Computer Vision, pp. 513–518 (2021)

    Google Scholar 

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Correspondence to Enrique Hortal .

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Hartmann, K., Hortal, E. (2023). COVID-19 Diagnosis in 3D Chest CT Scans with Attention-Based Models. In: Juarez, J.M., Marcos, M., Stiglic, G., Tucker, A. (eds) Artificial Intelligence in Medicine. AIME 2023. Lecture Notes in Computer Science(), vol 13897. Springer, Cham. https://doi.org/10.1007/978-3-031-34344-5_27

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  • DOI: https://doi.org/10.1007/978-3-031-34344-5_27

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  • Publisher Name: Springer, Cham

  • Print ISBN: 978-3-031-34343-8

  • Online ISBN: 978-3-031-34344-5

  • eBook Packages: Computer ScienceComputer Science (R0)

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