Abstract
The accurate and consistent border segmentation plays an important role in the tumor volume estimation and its treatment in the field of Medical Image Segmentation. Globally, Lung cancer is one of the leading causes of death and the early detection of lung nodules is essential for the early cancer diagnosis and survival rate of patients. The goal of this study was to demonstrate the feasibility of Deephealth toolkit including PyECVL and PyEDDL libraries to precisely segment lung nodules. Experiments for lung nodules segmentation has been carried out on UniToChest using PyECVL and PyEDDL, for data pre-processing as well as neural network training. The results depict accurate segmentation of lung nodules across a wide diameter range and better accuracy over a traditional detection approach. The datasets and the code used in this paper are publicly available as a baseline reference.
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References
Aberle, D., et al.: Reduced lung-cancer mortality with low-dose computed tomographic screening. N. Engl. J. Med. 365(5), 395–409 (2011). https://doi.org/10.1056/NEJMoa1102873
Barbano, C.A., et al.: Unitopatho, a labeled histopathological dataset for colorectal polyps classification and adenoma dysplasia grading. In: 2021 IEEE International Conference on Image Processing (ICIP), pp. 76–80. IEEE (2021)
Cancilla, M., et al.: The deephealth toolkit: a unified framework to boost biomedical applications. In: 2020 25th International Conference on Pattern Recognition (ICPR), pp. 9881–9888. IEEE (2021)
Chaudhry, H., et al.: Unitochest: a lung image dataset for segmentation of cancerous nodules on CT scans (2022). https://www.iciap2021.org/
DeepHealth: Deep-learning and HPC to boost biomedical applications for health (2019). https://deephealth-project.eu/
ecvl: Ecvl (2022). https://github.com/deephealthproject/ecvl
eddl: Eddl (2022). https://github.com/deephealthproject/eddl
Eisenhauer, E.A., et al.: New response evaluation criteria in solid tumours: revised RECIST guideline (version 1.1). Eur. J. Cancer 45(2), 228–247 (2009)
Gava, U., et al.: Unitobrain (2021). 10.21227/x8ea-vh16, https://dx.doi.org/10.21227/x8ea-vh16
Infante, M., Berghmans, T., Heuvelmans, M.A., Hillerdal, G., Oudkerk, M.: Slow-growing lung cancer as an emerging entity: from screening to clinical management. Eur. Respir. J. 42(6), 1706–1722 (2013)
Knight, S.B., Crosbie, P.A., Balata, H., Chudziak, J., Hussell, T., Dive, C.: Progress and prospects of early detection in lung cancer. Open Biol. 7(9) (2017). https://doi.org/10.1098/rsob.170070
LeCun, Y., Bengio, Y., Hinton, G.: Deep learning. Nature 521(7553), 436–444 (2015)
Liu, H., et al.: A cascaded dual-pathway residual network for lung nodule segmentation in CT images. Physica Med. 63, 112–121 (2019)
MacMahon, H., et al.: Guidelines for management of small pulmonary nodules detected on CT scans: a statement from the fleischner society. Radiology 237(2), 395–400 (2005)
Marten, K., Auer, F., Schmidt, S., Kohl, G., Rummeny, E.J., Engelke, C.: Inadequacy of manual measurements compared to automated CT volumetry in assessment of treatment response of pulmonary metastases using RECIST criteria. Eur. Radiol. 16(4), 781–790 (2006)
Oniga, D., et al.: Florea: applications of AI and HPC in the health domain. In: HPC, Big Data, and AI Convergence Towards Exascale: Challenge and Vision, p. 217 (2022)
Perlo, D., et al.: UniToChest (2022). https://doi.org/10.5281/zenodo.5797912
Puderbach, M., Kauczor, H.U.: Can lung MR replace lung CT? Pediatr. Radiol. 38(S3), 439–451 (2008). https://doi.org/10.1007/s00247-008-0844-7
pyecvl: Pyecvl (2022). https://github.com/deephealthproject/pyecvl
Revel, M.P.: Avoiding overdiagnosis in lung cancer screening: the volume doubling time strategy. Eur. Respir. J. 42, 1459–1463 (2013)
Ronneberger, O., Fischer, P., Brox, T.: U-Net: convolutional networks for biomedical image segmentation. In: Navab, N., Hornegger, J., Wells, W.M., Frangi, A.F. (eds.) MICCAI 2015. LNCS, vol. 9351, pp. 234–241. Springer, Cham (2015). https://doi.org/10.1007/978-3-319-24574-4_28
Siegel, R.L., Miller, K.D., Fuchs, H.E., Jemal, A.: Cancer statistics, 2021. CA: Can. J. Clin. 71(1), 7–33 (2021). https://doi.org/10.3322/caac.21654
National Lung Screening Trial Research Team: Results of initial low-dose computed tomographic screening for lung cancer. New Engl. J. Med. 368(21), 1980–1991 (2013)
Van Ginneken, B.: Computer-aided diagnosis in thoracic computed tomography. Imaging Dec. MRI 12(3), 11–22 (2008)
Wu, J., Qian, T.: A survey of pulmonary nodule detection, segmentation and classification in computed tomography with deep learning techniques. J. Med. Artif. Intell. 2(8), 1–12 (2019). https://doi.org/10.21037/jmai.2019.04.01
Zhao, Y.R., et al.: Comparison of three software systems for semi-automatic volumetry of pulmonary nodules on baseline and follow-up CT examinations. Acta Radiologica 55(6), 691–698 (2014)
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This work has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No 825111, DeepHealth Project.
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Chaudhry, H.A.H. et al. (2022). Lung Nodules Segmentation with DeepHealth Toolkit. In: Mazzeo, P.L., Frontoni, E., Sclaroff, S., Distante, C. (eds) Image Analysis and Processing. ICIAP 2022 Workshops. ICIAP 2022. Lecture Notes in Computer Science, vol 13373. Springer, Cham. https://doi.org/10.1007/978-3-031-13321-3_43
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