[go: up one dir, main page]
More Web Proxy on the site http://driver.im/
IEICE Transactions on Information and Systems
Online ISSN : 1745-1361
Print ISSN : 0916-8532
Regular Section
GPU-Accelerated Stochastic Simulation of Biochemical Networks
Pilsung KANG
Author information
JOURNAL FREE ACCESS

2018 Volume E101.D Issue 3 Pages 786-790

Details
Abstract

We present a GPU (graphics processing unit) accelerated stochastic algorithm implementation for simulating biochemical reaction networks using the latest NVidia architecture. To effectively utilize the massive parallelism offered by the NVidia Pascal hardware, we apply a set of performance tuning methods and guidelines such as exploiting the architecture's memory hierarchy in our algorithm implementation. Based on our experimentation results as well as comparative analysis using CPU-based implementations, we report our initial experiences on the performance of modern GPUs in the context of scientific computing.

Content from these authors
© 2018 The Institute of Electronics, Information and Communication Engineers
Previous article Next article
feedback
Top