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Fengfeng Zhou
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2020 – today
- 2024
- [j61]Ruochi Zhang, Chao Wu, Qian Yang, Chang Liu, Yan Wang
, Kewei Li, Lan Huang, Fengfeng Zhou
MolFeSCue: enhancing molecular property prediction in data-limited and imbalanced contexts using few-shot and contrastive learning. Bioinform. 40(4) (2024) - [j60]Yan Wang, Ruochi Zhang
FairCare: Adversarial training of a heterogeneous graph neural network with attention mechanism to learn fair representations of electronic health records. Inf. Process. Manag. 61(2): 103682 (2024) - [j59]Chang Liu
A probabilistic knowledge graph for target identification. PLoS Comput. Biol. 20(4): 1011945 (2024) - [i8]Ruochi Zhang, Haoran Wu, Chang Liu, Huaping Li, Yuqian Wu, Kewei Li, Yifan Wang, Yifan Deng, Jiahui Chen, Fengfeng Zhou, Xin Gao:
PepHarmony: A Multi-View Contrastive Learning Framework for Integrated Sequence and Structure-Based Peptide Encoding. CoRR abs/2401.11360 (2024) - [i7]Kewei Li, Yuqian Wu, Yutong Guo, Yinheng Li, Yusi Fan, Ruochi Zhang, Lan Huang, Fengfeng Zhou:
AMPCliff: quantitative definition and benchmarking of activity cliffs in antimicrobial peptides. CoRR abs/2404.09738 (2024) - [i6]Shikun Feng, Jiaxin Zheng, Yinjun Jia, Yanwen Huang, Fengfeng Zhou, Wei-Ying Ma, Yanyan Lan:
MoleculeCLA: Rethinking Molecular Benchmark via Computational Ligand-Target Binding Analysis. CoRR abs/2406.17797 (2024) - [i5]Xuechen Mu, Zhenyu Huang, Kewei Li, Haotian Zhang, Xiuli Wang, Yusi Fan, Kai Zhang, Fengfeng Zhou:
TemporalPaD: a reinforcement-learning framework for temporal feature representation and dimension reduction. CoRR abs/2409.18597 (2024) - 2023
- [j58]Meiyu Duan
Orchestrating information across tissues via a novel multitask GAT framework to improve quantitative gene regulation relation modeling for survival analysis. Briefings Bioinform. 24(4) (2023) - [j57]Meiyu Duan, Yaqing Liu, Dong Zhao, Haijun Li, Gongyou Zhang, Hongmei Liu, Yueying Wang, Yusi Fan, Lan Huang, Fengfeng Zhou
Gender-specific dysregulations of nondifferentially expressed biomarkers of metastatic colon cancer. Comput. Biol. Chem. 104: 107858 (2023) - [j56]Fei Li
EpiTEAmDNA: Sequence feature representation via transfer learning and ensemble learning for identifying multiple DNA epigenetic modification types across species. Comput. Biol. Medicine 160: 107030 (2023) - [j55]Yan Wang, Ruochi Zhang
OCMR: A comprehensive framework for optical chemical molecular recognition. Comput. Biol. Medicine 163: 107187 (2023) - [j54]Yi Lai, Dong Xu, Kewei Li, Lin Song, Yiming Chen, He Li, Zhaoyang Hu, Fengfeng Zhou
Multi-view progression diagnosis of thyroid cancer by integrating platelet transcriptomes and blood routine tests. Comput. Biol. Medicine 167: 107613 (2023) - [j53]Gancheng Zhu, Yusi Fan
GSRNet, an adversarial training-based deep framework with multi-scale CNN and BiGRU for predicting genomic signals and regions. Expert Syst. Appl. 229(Part A): 120439 (2023) - [j52]Changfan Luo, Yiping Xu, Yongkang Shao, Zihan Wang
EvaGoNet: An integrated network of variational autoencoder and Wasserstein generative adversarial network with gradient penalty for binary classification tasks. Inf. Sci. 629: 109-122 (2023) - [j51]Xin Juan, Fengfeng Zhou, Wentao Wang, Wei Jin, Jiliang Tang, Xin Wang:
INS-GNN: Improving graph imbalance learning with self-supervision. Inf. Sci. 637: 118935 (2023) - [j50]Xingyu Fu
An finite element analysis surrogate model with boundary oriented graph embedding approach for rapid design. J. Comput. Des. Eng. 10(3): 1026-1046 (2023) - [j49]Chunyan Tang
FMGNN: A Method to Predict Compound-Protein Interaction With Pharmacophore Features and Physicochemical Properties of Amino Acids. IEEE ACM Trans. Comput. Biol. Bioinform. 20(2): 1030-1040 (2023) - [i4]Ruochi Zhang, Haoran Wu, Yuting Xiu, Kewei Li, Ningning Chen, Yu Wang, Yan Wang, Xin Gao, Fengfeng Zhou:
PepLand: a large-scale pre-trained peptide representation model for a comprehensive landscape of both canonical and non-canonical amino acids. CoRR abs/2311.04419 (2023) - 2022
- [j48]Yaqi Zhang, Gancheng Zhu, Kewei Li, Fei Li
HLAB: learning the BiLSTM features from the ProtBert-encoded proteins for the class I HLA-peptide binding prediction. Briefings Bioinform. 23(5) (2022) - [j47]Meiyu Duan
Pan-cancer identification of the relationship of metabolism-related differentially expressed transcription regulation with non-differentially expressed target genes via a gated recurrent unit network. Comput. Biol. Medicine 148: 105883 (2022) - [j46]Qian Wang, Meiyu Duan, Yusi Fan, Shuai Liu, Yanjiao Ren, Lan Huang, Fengfeng Zhou
Transforming OMIC features for classification using siamese convolutional networks. J. Bioinform. Comput. Biol. 20(3): 2250013:1-2250013:23 (2022) - [j45]Haishi Zhao
Superpixel-Level Global and Local Similarity Graph-Based Clustering for Large Hyperspectral Images. IEEE Trans. Geosci. Remote. Sens. 60: 1-16 (2022) - 2021
- [j44]Shuai Liu
Survival Time Prediction of Breast Cancer Patients Using Feature Selection Algorithm Crystall. IEEE Access 9: 24433-24445 (2021) - [j43]Tong Shao, Wenfang Wang, Meiyu Duan, Jiahui Pan, Zhuoyuan Xin, Baoyue Liu, Fengfeng Zhou
Application of Bayesian phylogenetic inference modelling for evolutionary genetic analysis and dynamic changes in 2019-nCoV. Briefings Bioinform. 22(2): 896-904 (2021) - [j42]Jinpu Cai, Yuyang Xu, Wen Zhang, Shiying Ding, Yuewei Sun, Jingyi Lyu, Meiyu Duan
A comprehensive comparison of residue-level methylation levels with the regression-based gene-level methylation estimations by ReGear. Briefings Bioinform. 22(4) (2021) - [j41]Yuanyuan Han, Lan Huang, Fengfeng Zhou
A dynamic recursive feature elimination framework (dRFE) to further refine a set of OMIC biomarkers. Bioinform. 37(15): 2183-2189 (2021) - [j40]Sida Gao, Puli Wang, Yuming Feng, Xuchen Xie, Meiyu Duan, Yusi Fan, Shuai Liu, Lan Huang, Fengfeng Zhou
RIFS2D: A two-dimensional version of a randomly restarted incremental feature selection algorithm with an application for detecting low-ranked biomarkers. Comput. Biol. Medicine 133: 104405 (2021) - [j39]Meiyu Duan
Computational pan-cancer characterization of model-based quantitative transcription regulations dysregulated in regional lymph node metastasis. Comput. Biol. Medicine 135: 104571 (2021) - [j38]Fengfeng Zhou, Meiyu Duan:
Impacts of high-quality public data: Special issue on integrating public and in-house biomedical data. J. Bioinform. Comput. Biol. 19(3): 2102002:1-2102002:2 (2021) - [j37]Daiguo Deng, Xiaowei Chen, Ruochi Zhang, Zengrong Lei, Xiaojian Wang
XGraphBoost: Extracting Graph Neural Network-Based Features for a Better Prediction of Molecular Properties. J. Chem. Inf. Model. 61(6): 2697-2705 (2021) - [j36]Daiguo Deng, Xiaowei Chen, Ruochi Zhang, Zengrong Lei, Xiaojian Wang
Correction to "XGraphBoost: Extracting Graph Neural Network-Based Features for a Better Prediction of Molecular Properties". J. Chem. Inf. Model. 61(9): 4820-4822 (2021) - [j35]Yiran Huang, Yusi Xie
Finding branched pathways in metabolic network via atom group tracking. PLoS Comput. Biol. 17(2) (2021) - [j34]Haishi Zhao
Spectral-Spatial Genetic Algorithm-Based Unsupervised Band Selection for Hyperspectral Image Classification. IEEE Trans. Geosci. Remote. Sens. 59(11): 9616-9632 (2021) - [i3]Xingyu Fu, Fengfeng Zhou, Dheeraj Peddireddy, Zhengyang Kang, Martin Byung-Guk Jun, Vaneet Aggarwal:
An FEA surrogate model with Boundary Oriented Graph Embedding approach. CoRR abs/2108.13509 (2021) - 2020
- [j33]Yexian Zhang
ELMO: An Efficient Logistic Regression-Based Multi-Omic Integrated Analysis Method for Breast Cancer Intrinsic Subtypes. IEEE Access 8: 5121-5130 (2020) - [j32]Jialiang Li
MuscNet, a Weighted Voting Model of Multi-Source Connectivity Networks to Predict Mild Cognitive Impairment Using Resting-State Functional MRI. IEEE Access 8: 174023-174031 (2020) - [j31]Chenwei Lou, Jian Zhao, Ruoyao Shi
sefOri: selecting the best-engineered sequence features to predict DNA replication origins. Bioinform. 36(1): 49-55 (2020) - [j30]Zheng Chen, Meng Pang, Zixin Zhao, Shuainan Li, Rui Miao, Yifan Zhang, Xiaoyue Feng, Xin Feng, Yexian Zhang, Meiyu Duan
Feature selection may improve deep neural networks for the bioinformatics problems. Bioinform. 36(5): 1542-1552 (2020) - [j29]Shuhan Yang, Bo Li, Yinda Zhang, Meiyu Duan, Shuai Liu, Yexian Zhang, Xin Feng, Renbo Tan, Lan Huang, Fengfeng Zhou
Selection of features for patient-independent detection of seizure events using scalp EEG signals. Comput. Biol. Medicine 119: 103671 (2020) - [j28]Zhipeng Wei, Shiying Ding, Meiyu Duan, Shuai Liu, Lan Huang, Fengfeng Zhou
FeSTwo, a two-step feature selection algorithm based on feature engineering and sampling for the chronological age regression problem. Comput. Biol. Medicine 125: 104008 (2020) - [j27]Lei Wang
Combining High Speed ELM Learning with a Deep Convolutional Neural Network Feature Encoding for Predicting Protein-RNA Interactions. IEEE ACM Trans. Comput. Biol. Bioinform. 17(3): 972-980 (2020) - [c4]Zhipeng Wei, Jingjing Chen, Xingxing Wei, Linxi Jiang, Tat-Seng Chua, Fengfeng Zhou, Yu-Gang Jiang:
Heuristic Black-Box Adversarial Attacks on Video Recognition Models. AAAI 2020: 12338-12345
2010 – 2019
- 2019
- [j26]Hao Zhang, Renchu Guan
Deep Residual Convolutional Neural Network for Protein-Protein Interaction Extraction. IEEE Access 7: 89354-89365 (2019) - [j25]Bingxin Yu, Zhongyu Wang, Renxiang Zhu, Xin Feng, Mingran Qi, Jialiang Li, Ruixue Zhao, Lan Huang, Ruihao Xin, Fan Li, Fengfeng Zhou
The Transverse Ultrasonogram of Thyroid Papillary Carcinoma Has a Better Prediction Accuracy Than the Longitudinal One. IEEE Access 7: 100763-100770 (2019) - [j24]Renxiang Zhu
Integrating Five Feature Types Extracted From Ultrasonograms to Improve the Prediction of Thyroid Papillary Carcinoma. IEEE Access 7: 101820-101828 (2019) - [j23]Xin Feng
Accurate Prediction of Neoadjuvant Chemotherapy Pathological Complete Remission (pCR) for the Four Sub-Types of Breast Cancer. IEEE Access 7: 134697-134706 (2019) - [j22]Kangning Li
Accurate Fatigue Detection Based on Multiple Facial Morphological Features. J. Sensors 2019: 7934516:1-7934516:10 (2019) - [c3]Zhipeng Wei, Jingjing Chen
DietLens-Eout: Large Scale Restaurant Food Photo Recognition. ICMR 2019: 399-403 - [i2]Zhipeng Wei, Jingjing Chen, Xingxing Wei, Linxi Jiang, Tat-Seng Chua, Fengfeng Zhou, Yu-Gang Jiang:
Heuristic Black-box Adversarial Attacks on Video Recognition Models. CoRR abs/1911.09449 (2019) - 2018
- [j21]Ruochi Zhang, Ruixue Zhao, Xinyang Zhao, Di Wu, Weiwei Zheng, Xin Feng, Fengfeng Zhou
pyHIVE, a health-related image visualization and engineering system using Python. BMC Bioinform. 19(1): 452:1-452:6 (2018) - [j20]Ruixue Zhao, Ruochi Zhang, Tongyu Tang, Xin Feng, Jialiang Li
TriZ-a rotation-tolerant image feature and its application in endoscope-based disease diagnosis. Comput. Biol. Medicine 99: 182-190 (2018) - [j19]Yinda Zhang, Shuhan Yang, Yang Liu, Yexian Zhang, Bingfeng Han, Fengfeng Zhou
Integration of 24 Feature Types to Accurately Detect and Predict Seizures Using Scalp EEG Signals. Sensors 18(5): 1372 (2018) - 2017
- [j18]Ruiquan Ge
MUSTv2: An Improved De Novo Detection Program for Recently Active Miniature Inverted Repeat Transposable Elements (MITEs). J. Integr. Bioinform. 14(3) (2017) - [j17]Pu Wang, Ruiquan Ge
hMuLab: A Biomedical Hybrid MUlti-LABel Classifier Based on Multiple Linear Regression. IEEE ACM Trans. Comput. Biol. Bioinform. 14(5): 1173-1180 (2017) - 2016
- [j16]Ruiquan Ge
McTwo: a two-step feature selection algorithm based on maximal information coefficient. BMC Bioinform. 17: 142 (2016) - [j15]Dongli Ma
CD3D and PRKCQ work together to discriminate between B-cell and T-cell acute lymphoblastic leukemia. Comput. Biol. Medicine 77: 16-22 (2016) - 2015
- [j14]Miaomiao Zhao, Yunpeng Cai, Jiankui He, Guanyu Wang, Dongqing Wei
Personalized clinical data screening: Special issue on health informatics. Comput. Biol. Medicine 61: 161-162 (2015) - [j13]Bin Liu, Jikui Liu, Guoqing Wang, Kun Huang, Fan Li, Yang Zheng, Youxi Luo, Fengfeng Zhou
A novel electrocardiogram parameterization algorithm and its application in myocardial infarction detection. Comput. Biol. Medicine 61: 178-184 (2015) - [j12]Wei Du, Zhongbo Cao, Yan Wang, Fengfeng Zhou
Specific Biomarkers: Detection of Cancer Biomarkers Through High-Throughput Transcriptomics Data. Cogn. Comput. 7(6): 652-666 (2015) - 2014
- [j11]Weihua Pan, Yanan Zhao, Yun Xu, Fengfeng Zhou
WinHAP2: an extremely fast haplotype phasing program for long genotype sequences. BMC Bioinform. 15: 164 (2014) - [j10]Bin Liu, Xiaotian Zhang, Honglan Huang, Ying Zhang, Fengfeng Zhou
A novel molecular typing method of Mycobacteria based on DNA barcoding visualization. J. Clin. Bioinform. 4: 4 (2014) - 2011
- [c2]Po-Yen Wu, John H. Phan, Fengfeng Zhou
Evaluation of normalization methods for RNA-Seq gene expression estimation. BIBM Workshops 2011: 50-57 - 2010
- [j9]Fengfeng Zhou
cBar: a computer program to distinguish plasmid-derived from chromosome-derived sequence fragments in metagenomics data. Bioinform. 26(16): 2051-2052 (2010)
2000 – 2009
- 2009
- [j8]Thao T. Tran, Fengfeng Zhou
De novo computational prediction of non-coding RNA genes in prokaryotic genomes. Bioinform. 25(22): 2897-2905 (2009) - [j7]Fengfeng Zhou
Large-Scale Analyses of Glycosylation in Cellulases. Genom. Proteom. Bioinform. 7(4): 194-199 (2009) - 2008
- [j6]Fengfeng Zhou
Barcodes for genomes and applications. BMC Bioinform. 9 (2008) - 2006
- [j5]Fengfeng Zhou
CSS-Palm: palmitoylation site prediction with a clustering and scoring strategy (CSS). Bioinform. 22(7): 894-896 (2006) - [j4]Yu Xue
SUMOsp: a web server for sumoylation site prediction. Nucleic Acids Res. 34(Web-Server-Issue): 254-257 (2006) - 2005
- [j3]Fengfeng Zhou
No-wait scheduling in single-hop multi-channel LANs. Inf. Process. Lett. 93(1): 19-24 (2005) - [j2]Yu Xue
GPS: a comprehensive www server for phosphorylation sites prediction. Nucleic Acids Res. 33(Web-Server-Issue): 184-187 (2005) - [i1]Fengfeng Zhou, Guoliang Chen, Yinlong Xu:
Construction of Small Worlds in the Physical Topology of Wireless Networks. CoRR abs/cs/0503051 (2005) - 2004
- [c1]Bin Song, Fengfeng Zhou
Algorithms for Loosely Constrained Multiple Sequence Alignment. CIS 2004: 213-218 - 2003
- [j1]Fengfeng Zhou
Minimizing ADMs on WDM Directed Fiber Trees. J. Comput. Sci. Technol. 18(6): 725-731 (2003)
Coauthor Index
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last updated on 2024-12-02 22:35 CET by the dblp team
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