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Yu Xue 0001
Person information
- affiliation: Huazhong University of Science and Technology, Key Laboratory of Molecular Biophysics of Ministry of Education, Wuhan, China
- affiliation: University of Science and Technology of China, Laboratory of Cellular Dynamics, Hefei, China
Other persons with the same name
- Yu Xue — disambiguation page
- Yu Xue 0002
— Heilongjiang University, School of Mathematical Science, Harbin, China
- Yu Xue 0003
- Yu Xue 0004 — China University of Mining and Technology, School of Computer Science and Technology, Xuzhou, China (and 1 more)
- Yu Xue 0005
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2020 – today
- 2023
- [j42]Muyang Huang, Yu Xue, Haojie Luo, Yi Wang, Yuan Tang, Qiyun Wen:
Dynamics of a Kuramoto Model with Two-Body and Three-Body Interactions. Int. J. Bifurc. Chaos 33(2): 2350025:1-2350025:9 (2023) - [j41]Wen-Kang Shen
AnimalTFDB 4.0: a comprehensive animal transcription factor database updated with variation and expression annotations. Nucleic Acids Res. 51(D1): 39-45 (2023) - [j40]Miaomiao Chen, Weizhi Zhang, Yujie Gou, Danyang Xu, Yuxiang Wei, Dan Liu, Cheng Han, Xinhe Huang, Chengzhi Li, Wanshan Ning
GPS 6.0: an updated server for prediction of kinase-specific phosphorylation sites in proteins. Nucleic Acids Res. 51(W1): 243-250 (2023) - 2022
- [j39]Chenwei Wang
GPS-Uber: a hybrid-learning framework for prediction of general and E3-specific lysine ubiquitination sites. Briefings Bioinform. 23(2) (2022) - [j38]Yongbiao Xue, Yiming Bao, Zhang Zhang, Wenming Zhao, Jing-Fa Xiao, Shunmin He, Guoqing Zhang, Yixue Li, Guoping Zhao, Runsheng Chen, Jingyao Zeng, Yadong Zhang, Yunfei Shang, Jialin Mai, Shuo Shi, Mingming Lu, Congfan Bu, Zhewen Zhang, Zhenglin Du, Yinying Wang, Hongen Kang, Tianyi Xu, Lili Hao, Peilin Jia, Shuai Jiang, Qiheng Qian, Tongtong Zhu, Wenting Zong, Tong Jin, Yuansheng Zhang, Dong Zou, Qiang Du, Changrui Feng, Lina Ma, Sisi Zhang, Anke Wang, Lili Dong, Yanqing Wang, Wan Liu, Xing Yan, Yunchao Ling, Zhihua Zhou, Wang Kang, Tao Zhang, Shuai Ma, Haoteng Yan, Zunpeng Liu, Zejun Ji, Yusheng Cai, Si Wang, Moshi Song, Jie Ren, Qi Zhou, Jing Qu, Weiqi Zhang, Guanghui Liu, Xu Chen, Tingting Chen, Yanling Sun, Caixia Yu, Bixia Tang, Junwei Zhu, Shuang Zhai, Yubin Sun, Qiancheng Chen, Xiaoyu Yang, Xin Zhang, Zhengqi Sang, Yonggang Wang, Yilin Zhao, Huanxin Chen, Li Lan, Yingke Ma, Yaokai Jia, Xinchang Zheng, Meili Chen, Ming Chen, Guangyi Niu, Rong Pan, Wei Jing, Jian Sang, Chang Liu, Yujia Xiong, Mochen Zhang, Guoliang Wang, Lizhi Yi, Wei Zhao, Song Wu, Zhuang Xiong, Rujiao Li, Zheng Gong, Lin Liu, Zhao Li, Qianpeng Li, Sicheng Luo, Jiajia Wang, Yirong Shi, Honghong Zhou, Peng Zhang, Tingrui Song, Yanyan Li, Fei Yang, Mengwei Li, Zhaohua Li, Dongmei Tian, Xiaonan Liu, Cuiping Li, Xufei Teng, Shuhui Song, Yang Zhang, Ruru Chen, Rongqin Zhang, Feng Xu, Yifan Wang, Chenfen Zhou, Haizhou Wang, Andrew E. Teschendorff, Yungang He, Zhen Yang, Lun Li, Na Li, Ying Cui, Guangya Duan, Gangao Wu, Tianhao Huang, Enhui Jin, Hailong Kang, Zhonghuang Wang, Hua Chen, Mingkun Li, Wanshan Ning, Yu Xue, Yanhu Liu, Qijun Zhou, Xingyan Liu, Longlong Zhang, Bingyu Mao, Shihua Zhang, Yaping Zhang, Guodong Wang, Qianghui Zhu, Xin Li, Menghua Li, Yuanming Liu, Hong Luo, Xiaoyuan Wu, Haichun Jing, Yitong Pan, Leisheng Shi, Zhixiang Zuo, Jian Ren, Xinxin Zhang, Yun Xiao, Xia Li, Dan Liu, Chi Zhang, Zheng Zhao, Tao Jiang, Wanying Wu, Fangqing Zhao, Xianwen Meng, Di Peng, Hao Luo, Feng Gao, Shaofeng Lin, Chuijie Liu, Anyuan Guo, Hao Yuan, Tianhan Su, Yong E. Zhang, Yincong Zhou, Guoji Guo, Shanshan Fu, Xiaodan Tan, Weizhi Zhang, Mei Luo, Yubin Xie, Chenwei Wang, Xingyu Liao, Xin Gao, Jianxin Wang, Guiyan Xie, Chunhui Yuan, Feng Tian, Dechang Yang, Ge Gao, Dachao Tang, Wenyi Wu, Yujie Gou, Cheng Han, Qinghua Cui, Xiangshang Li, Chuan-Yun Li, Xiaotong Luo:
Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2022. Nucleic Acids Res. 50(D1): 27-38 (2022) - [j37]Weizhi Zhang, Xiaodan Tan, Shaofeng Lin
CPLM 4.0: an updated database with rich annotations for protein lysine modifications. Nucleic Acids Res. 50(D1): 451-459 (2022) - [j36]Wanshan Ning
HemI 2.0: an online service for heatmap illustration. Nucleic Acids Res. 50(W1): 405-411 (2022) - 2021
- [j35]Shaofeng Lin
EPSD: a well-annotated data resource of protein phosphorylation sites in eukaryotes. Briefings Bioinform. 22(1): 298-307 (2021) - [j34]Wanshan Ning, Peiran Jiang, Yaping Guo, Chenwei Wang
GPS-Palm: a deep learning-based graphic presentation system for the prediction of S-palmitoylation sites in proteins. Briefings Bioinform. 22(2): 1836-1847 (2021) - [j33]Yongbiao Xue, Yiming Bao, Zhang Zhang, Wenming Zhao, Jing-Fa Xiao, Shunmin He, Guoqing Zhang, Yixue Li, Guoping Zhao, Runsheng Chen, Shuhui Song, Lina Ma, Dong Zou, Dongmei Tian, Cuiping Li, Junwei Zhu, Zheng Gong, Meili Chen, Anke Wang, Yingke Ma, Mengwei Li, Xufei Teng, Ying Cui, Guangya Duan, Mochen Zhang, Tong Jin, Chengmin Shi, Zhenglin Du, Yadong Zhang, Chuandong Liu, Rujiao Li, Jingyao Zeng, Lili Hao, Shuai Jiang, Hua Chen, Dali Han, Tao Zhang, Wang Kang, Fei Yang, Jing Qu, Weiqi Zhang, Guanghui Liu, Lin Liu, Yang Zhang, Guangyi Niu, Tongtong Zhu, Changrui Feng, Xiaonan Liu, Yuansheng Zhang, Zhao Li, Ruru Chen, Qianpeng Li, Zhongyi Hua, Chao Jiang, Ziyuan Chen, Fangshu He, Yuyang Zhao, Yan Jin, Luqi Huang, Yuan Yuan, Chenfen Zhou, Qingwei Xu, Sheng He, Wei Ye, Ruifang Cao, Pengyu Wang, Yunchao Ling, Xing Yan, Qingzhong Wang, Qiang Du, Wenting Zong, Hongen Kang, Zhuang Xiong, Wendi Huan, Sirui Zhang, Qiguang Xia, Xiaojuan Fan, Zefeng Wang, Xu Chen, Tingting Chen, Sisi Zhang, Bixia Tang, Lili Dong, Zhewen Zhang, Zhonghuang Wang, Hailong Kang, Yanqing Wang, Song Wu, Ming Chen, Chang Liu, Yujia Xiong, Xueying Shao, Yanyan Li, Honghong Zhou, Xiaomin Chen, Yu Zheng, Quan Kang, Di Hao, Lili Zhang, Huaxia Luo, Yajing Hao, Peng Zhang, Zhi Nie, Shuhuan Yu, Jian Sang, Zhaohua Li, Xiangquan Zhang, Qing Zhou, Shuang Zhai, Yaping Zhang, Guodong Wang, Qianghui Zhu, Xin Li, Menghua Li, Jun Yan, Chen Li, Zhennan Wang, Xiangfeng Wang
Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2021. Nucleic Acids Res. 49(Database-Issue): D18-D28 (2021) - 2020
- [j32]Chenwei Wang
GPS 5.0: An Update on the Prediction of Kinase-specific Phosphorylation Sites in Proteins. Genom. Proteom. Bioinform. 18(1): 72-80 (2020) - [j31]Wanshan Ning
HybridSucc: A Hybrid-learning Architecture for General and Species-specific Succinylation Site Prediction. Genom. Proteom. Bioinform. 18(2): 194-207 (2020)
2010 – 2019
- 2019
- [j30]Yaping Guo, Di Peng
iEKPD 2.0: an update with rich annotations for eukaryotic protein kinases, protein phosphatases and proteins containing phosphoprotein-binding domains. Nucleic Acids Res. 47(Database-Issue): D344-D350 (2019) - 2018
- [j29]Zhang Zhang
Bioinformatics Commons: The Cornerstone of Life and Health Sciences. Genom. Proteom. Bioinform. 16(4): 223-225 (2018) - [j28]Hao-Dong Xu
PTMD: A Database of Human Disease-associated Post-translational Modifications. Genom. Proteom. Bioinform. 16(4): 244-251 (2018) - [j27]Yubin Xie
DeepNitro: Prediction of Protein Nitration and Nitrosylation Sites by Deep Learning. Genom. Proteom. Bioinform. 16(4): 294-306 (2018) - [j26]Ghazaleh Taherzadeh
Predicting lysine-malonylation sites of proteins using sequence and predicted structural features. J. Comput. Chem. 39(22): 1757-1763 (2018) - [j25]Jiaqi Zhou
iUUCD 2.0: an update with rich annotations for ubiquitin and ubiquitin-like conjugations. Nucleic Acids Res. 46(Database-Issue): D447-D453 (2018) - 2017
- [j24]Wankun Deng
Computational prediction of methylation types of covalently modified lysine and arginine residues in proteins. Briefings Bioinform. 18(4): 647-658 (2017) - [j23]Yang Xu
WERAM: a database of writers, erasers and readers of histone acetylation and methylation in eukaryotes. Nucleic Acids Res. 45(Database-Issue): D264-D270 (2017) - [j22]Shujing Li
CGDB: a database of circadian genes in eukaryotes. Nucleic Acids Res. 45(Database-Issue): D397-D403 (2017) - 2016
- [j21]Yu Xue
Precision Medicine: What Challenges Are We Facing? Genom. Proteom. Bioinform. 14(5): 253-261 (2016) - 2015
- [j20]Zhicheng Pan, Bangshan Wang, Ying Zhang, Yongbo Wang, Shahid Ullah
dbPSP: a curated database for protein phosphorylation sites in prokaryotes. Database J. Biol. Databases Curation 2015 (2015) - [j19]Wenzhong Liu
IBS: an illustrator for the presentation and visualization of biological sequences. Bioinform. 31(20): 3359-3361 (2015) - [j18]Hong-Mei Zhang, Teng Liu
AnimalTFDB 2.0: a resource for expression, prediction and functional study of animal transcription factors. Nucleic Acids Res. 43(Database-Issue): 76-81 (2015) - [j17]Zhengnan Huang, Lili Ma
MiCroKiTS 4.0: a database of midbody, centrosome, kinetochore, telomere and spindle. Nucleic Acids Res. 43(Database-Issue): 328-334 (2015) - 2014
- [j16]Han Cheng, Wankun Deng
dbPPT: a comprehensive database of protein phosphorylation in plants. Database J. Biol. Databases Curation 2014 (2014) - [j15]Yongbo Wang, Zexian Liu
EKPD: a hierarchical database of eukaryotic protein kinases and protein phosphatases. Nucleic Acids Res. 42(Database-Issue): 496-502 (2014) - [j14]Zexian Liu
CPLM: a database of protein lysine modifications. Nucleic Acids Res. 42(Database-Issue): 531-536 (2014) - [j13]Qi Zhao
GPS-SUMO: a tool for the prediction of sumoylation sites and SUMO-interaction motifs. Nucleic Acids Res. 42(Webserver-Issue): 325-330 (2014) - 2013
- [j12]Zexian Liu, Jian Ren, Jun Cao, Jiang He, Xuebiao Yao, Changjiang Jin, Yu Xue:
Systematic analysis of the Plk-mediated phosphoregulation in eukaryotes. Briefings Bioinform. 14(3): 344-360 (2013) - [j11]Tianshun Gao
UUCD: a family-based database of ubiquitin and ubiquitin-like conjugation. Nucleic Acids Res. 41(Database-Issue): 445-451 (2013) - 2012
- [j10]Yuanwei Zhang
CPSS: a computational platform for the analysis of small RNA deep sequencing data. Bioinform. 28(14): 1925-1927 (2012) - 2011
- [j9]Yuanwei Zhang
Prediction of novel pre-microRNAs with high accuracy through boosting and SVM. Bioinform. 27(10): 1436-1437 (2011) - [j8]Zexian Liu
CPLA 1.0: an integrated database of protein lysine acetylation. Nucleic Acids Res. 39(Database-Issue): 1029-1034 (2011) - 2010
- [j7]Jian Ren
MiCroKit 3.0: an integrated database of midbody, centrosome and kinetochore. Nucleic Acids Res. 38(Database-Issue): 155-160 (2010)
2000 – 2009
- 2008
- [c2]YuZhong Zhao, Yun Xu, ZhiHao Wang, Changjiang Jin, Xinjiao Gao, Yu Xue, Xuebiao Yao
Proteome-Wide Analysis of Amino Acid Absence in Composition and Plasticity. ICIC (1) 2008: 167-178 - 2006
- [j6]Fengfeng Zhou
CSS-Palm: palmitoylation site prediction with a clustering and scoring strategy (CSS). Bioinform. 22(7): 894-896 (2006) - [j5]Yu Xue
PPSP: prediction of PK-specific phosphorylation site with Bayesian decision theory. BMC Bioinform. 7: 163 (2006) - [j4]Yu Xue
NBA-Palm: prediction of palmitoylation site implemented in Naïve Bayes algorithm. BMC Bioinform. 7: 458 (2006) - [j3]Hu Chen, Yu Xue
MeMo: a web tool for prediction of protein methylation modifications. Nucleic Acids Res. 34(Web-Server-Issue): 249-253 (2006) - [j2]Yu Xue
SUMOsp: a web server for sumoylation site prediction. Nucleic Acids Res. 34(Web-Server-Issue): 254-257 (2006) - [c1]Yu Xue, Changjiang Jin, Xuebiao Yao
HSPPIP: An Online Tool for Prediction of Protein-Protein Interactions in Humans. ICIC (3) 2006: 603-611 - 2005
- [j1]Yu Xue
GPS: a comprehensive www server for phosphorylation sites prediction. Nucleic Acids Res. 33(Web-Server-Issue): 184-187 (2005)
Coauthor Index
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