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Nicholson T. Collier
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2020 – today
- 2024
- [j13]Eric Tatara, Qinyun Lin
, Jonathan Ozik, Marynia Kolak, Nicholson T. Collier, Dylan Halpern, Luc Anselin, Harel Dahari, Basmattee Boodram, John A. Schneider:
Spatial inequities in access to medications for treatment of opioid use disorder highlight scarcity of methadone providers under counterfactual scenarios. PLoS Comput. Biol. 20(7): 1012307 (2024) - [c24]Arindam Fadikar, Abby Stevens, Nicholson T. Collier, Kok Ben Toh, Olga Morozova, Anna Hotton, Jared Clark, David Higdon, Jonathan Ozik:
Towards Improved Uncertainty Quantification of Stochastic Epidemic Models Using Sequential Monte Carlo. IPDPS (Workshops) 2024: 843-852 - [i3]Connor Robertson, Cosmin Safta, Nicholson T. Collier, Jonathan Ozik, Jaideep Ray:
Bayesian calibration of stochastic agent based model via random forest. CoRR abs/2406.19524 (2024) - 2023
- [j12]Atesmachew Hailegiorgis, Yuji Ishida, Nicholson T. Collier
Modeling suggests that virion production cycles within individual cells is key to understanding acute hepatitis B virus infection kinetics. PLoS Comput. Biol. 19(8) (2023) - [c23]Mihael Hategan-Marandiuc
PSI/J: A Portable Interface for Submitting, Monitoring, and Managing Jobs. e-Science 2023: 1-10 - [c22]Nicholson T. Collier, Justin M. Wozniak, Abby Stevens, Yadu N. Babuji, Mickaël Binois, Arindam Fadikar, Alexandra Würth, Kyle Chard, Jonathan Ozik:
Developing Distributed High-performance Computing Capabilities of an Open Science Platform for Robust Epidemic Analysis. IPDPS Workshops 2023: 868-877 - [c21]Arindam Fadikar, Nicholson T. Collier, Abby Stevens, Jonathan Ozik, Mickaël Binois, Kok Ben Toh:
Trajectory-Oriented Optimization of Stochastic Epidemiological Models. WSC 2023: 1244-1255 - [i2]Nicholson T. Collier, Justin M. Wozniak, Abby Stevens, Yadu N. Babuji, Mickaël Binois, Arindam Fadikar, Alexandra Würth, Kyle Chard, Jonathan Ozik:
Developing Distributed High-performance Computing Capabilities of an Open Science Platform for Robust Epidemic Analysis. CoRR abs/2304.14244 (2023) - [i1]Mihael Hategan-Marandiuc, André Merzky, Nicholson T. Collier, Ketan Maheshwari, Jonathan Ozik, Matteo Turilli, Andreas Wilke, Justin M. Wozniak, Kyle Chard, Ian T. Foster, Rafael Ferreira da Silva, Shantenu Jha, Daniel E. Laney:
PSI/J: A Portable Interface for Submitting, Monitoring, and Managing Jobs. CoRR abs/2307.07895 (2023) - 2022
- [j11]Maria DeYoreo
Sequentially calibrating a Bayesian microsimulation model to incorporate new information and assumptions. BMC Medical Informatics Decis. Mak. 22(1): 12 (2022) - [c20]Nicholson T. Collier, Jonathan Ozik:
Distributed Agent-Based Simulation with Repast4Py. WSC 2022: 192-206 - 2021
- [j10]Jonathan Ozik
A population data-driven workflow for COVID-19 modeling and learning. Int. J. High Perform. Comput. Appl. 35(5) (2021) - [j9]Stacy Tessler Lindau
Building and experimenting with an agent-based model to study the population-level impact of CommunityRx, a clinic-based community resource referral intervention. PLoS Comput. Biol. 17(10) (2021) - [c19]Bogdan Mucenic, Chaitanya Kaligotla, Abby Stevens, Jonathan Ozik, Nicholson T. Collier, Charles M. Macal:
Load Balancing Schemes for Large Synthetic Population-Based Complex Simulators. IPDPS Workshops 2021: 985-988 - [c18]Eric Tatara, John A. Schneider, Madeline Quasebarth, Nicholson T. Collier, Harold Pollack, Basmattee Boodram, Samuel H. Friedman, Elizabeth Salisbury-Afshar
Application of Distributed Agent-based Modeling to Investigate Opioid Use Outcomes in Justice Involved Populations. IPDPS Workshops 2021: 989-997 - 2020
- [j8]Chaitanya Kaligotla
Model Exploration of an Information-Based Healthcare Intervention Using Parallelization and Active Learning. J. Artif. Soc. Soc. Simul. 23(4) (2020) - [c17]Nicholson T. Collier, Jonathan Ozik, Eric R. Tatara:
Experiences in Developing a Distributed Agent-based Modeling Toolkit with Python. PyHPC@SC 2020: 1-12 - [c16]Justin M. Wozniak, Hyun Seung Yoo, Jamaludin Mohd-Yusof, Bogdan Nicolae
High-bypass Learning: Automated Detection of Tumor Cells That Significantly Impact Drug Response. MLHPC/AI4S@SC 2020: 40-49
2010 – 2019
- 2019
- [c15]Eric Tatara, Nicholson T. Collier, Jonathan Ozik, Alexander Gutfraind, Scott J. Cotler, Harel Dahari, Marian Major, Basmattee Boodram:
Multi-Objective Model Exploration of Hepatitis C Elimination in an Agent-Based Model of People who Inject Drugs. WSC 2019: 1008-1019 - 2018
- [j7]Justin M. Wozniak, Rajeev Jain
CANDLE/Supervisor: a workflow framework for machine learning applied to cancer research. BMC Bioinform. 19-S(18): 59-69 (2018) - [j6]Jonathan Ozik, Nicholson T. Collier, Justin M. Wozniak, Charles M. Macal, Chase Cockrell, Samuel H. Friedman, Ahmadreza Ghaffarizadeh, Randy W. Heiland
High-throughput cancer hypothesis testing with an integrated PhysiCell-EMEWS workflow. BMC Bioinform. 19-S(18): 81-97 (2018) - [j5]Jonathan Ozik
Extreme-Scale Dynamic Exploration of a Distributed Agent-Based Model With the EMEWS Framework. IEEE Trans. Comput. Soc. Syst. 5(3): 884-895 (2018) - [c14]George F. Zaki, Justin M. Wozniak, Jonathan Ozik, Nicholson T. Collier, Thomas S. Brettin, Rick Stevens:
Portable and Reusable Deep Learning Infrastructure with Containers to Accelerate Cancer Studies. ESPM2@SC 2018: 54-61 - [c13]Charles M. Macal, Nicholson T. Collier, Jonathan Ozik, Eric R. Tatara, John T. Murphy:
Chisim: an Agent-based simulation Model of Social Interactions in a Large Urban Area. WSC 2018: 810-820 - [c12]Chaitanya Kaligotla
Modeling an Information-based Community Health Intervention on the South Side of Chicago. WSC 2018: 2600-2611 - 2017
- [c11]Eric Tatara, Nicholson T. Collier, Jonathan Ozik, Charles M. Macal:
Endogenous Social Networks from Large-Scale Agent-Based Models. IPDPS Workshops 2017: 1492-1499 - 2016
- [c10]Jonathan Ozik, Nicholson T. Collier, Justin M. Wozniak, Carmine Spagnuolo
From desktop to Large-Scale Model Exploration with Swift/T. WSC 2016: 206-220 - 2015
- [j4]Jonathan Ozik, Nicholson T. Collier, Todd Combs, Charles M. Macal, Michael J. North:
Repast Simphony Statecharts. J. Artif. Soc. Soc. Simul. 18(3) (2015) - [c9]Nicholson T. Collier, Jonathan Ozik, Charles M. Macal:
Large-Scale Agent-Based Modeling with Repast HPC: A Case Study in Parallelizing an Agent-Based Model. Euro-Par Workshops 2015: 454-465 - [c8]John T. Murphy, Jonathan Ozik, Nicholson T. Collier, Mark Altaweel, Richard B. Lammers
Simulating regional hydrology and water management: an integrated agent-based approach. WSC 2015: 3913-3924 - 2014
- [c7]Jonathan Ozik, Michael Wilde, Nicholson T. Collier, Charles M. Macal:
Adaptive Simulation with Repast Simphony and Swift. Euro-Par Workshops (1) 2014: 418-429 - [c6]Jonathan Ozik, Nicholson T. Collier, John T. Murphy, Mark Altaweel, Richard B. Lammers
Simulating water, individuals, and management using a coupled and distributed approach. WSC 2014: 1120-1131 - 2013
- [j3]Michael J. North, Nicholson T. Collier, Jonathan Ozik, Eric R. Tatara, Charles M. Macal, Mark J. Bragen, Pam Sydelko:
Complex adaptive systems modeling with Repast Simphony. Complex Adapt. Syst. Model. 1: 3 (2013) - [j2]Nicholson T. Collier, Michael J. North:
Parallel agent-based simulation with Repast for High Performance Computing. Simul. 89(10): 1215-1235 (2013) - [c5]Nicholson T. Collier, Jonathan Ozik:
Test-driven agent-based simulation development. WSC 2013: 1551-1559 - [c4]Jonathan Ozik, Nicholson T. Collier, John T. Murphy, Michael J. North:
The ReLogo agent-based modeling language. WSC 2013: 1560-1568 - 2012
- [c3]Charles M. Macal, Michael J. North, Nicholson T. Collier, Vanja M. Dukic
Modeling the spread of community-associated MRSA. WSC 2012: 73:1-73:12
2000 – 2009
- 2006
- [j1]Michael J. North, Nicholson T. Collier, Jerry R. Vos:
Experiences creating three implementations of the repast agent modeling toolkit. ACM Trans. Model. Comput. Simul. 16(1): 1-25 (2006) - [c2]Michael J. North, T. R. Howe, Nicholson T. Collier, Jerry R. Vos:
Demeter, Persephone, and the Search for Emergence in Agent-Based Models. AAAI Fall Symposium: Interaction and Emergent Phenomena in Societies of Agents 2006: 36-43 - [c1]Michael J. North, T. R. Howe, Nicholson T. Collier, Jerry R. Vos:
A Declarative Model Assembly Infrastructure for Verification and Validation. WCSS 2006: 129-140
Coauthor Index
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