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Vladimir Reinharz
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2020 – today
- 2024
- [j12]Gabriel Loyer, Vladimir Reinharz
:
Concurrent prediction of RNA secondary structures with pseudoknots and local 3D motifs in an integer programming framework. Bioinform. 40(2) (2024) - 2023
- [j11]Atesmachew Hailegiorgis, Yuji Ishida, Nicholson T. Collier
Modeling suggests that virion production cycles within individual cells is key to understanding acute hepatitis B virus infection kinetics. PLoS Comput. Biol. 19(8) (2023) - [c4]Théo Boury
Automatic Exploration of the Natural Variability of RNA Non-Canonical Geometric Patterns with a Parameterized Sampling Technique. WABI 2023: 20:1-20:22 - 2021
- [j10]Antoine Soulé, Vladimir Reinharz, Roman Sarrazin-Gendron
Finding recurrent RNA structural networks with fast maximal common subgraphs of edge-colored graphs. PLoS Comput. Biol. 17(5) (2021) - [c3]Coline Gianfrotta
A Graph-Based Similarity Approach to Classify Recurrent Complex Motifs from Their Context in RNA Structures. SEA 2021: 19:1-19:18 - 2020
- [j9]Matan Drory Retwitzer, Vladimir Reinharz
incaRNAfbinv 2.0: a webserver and software with motif control for fragment-based design of RNAs. Bioinform. 36(9): 2920-2922 (2020) - [c2]Roman Sarrazin-Gendron
Stochastic Sampling of Structural Contexts Improves the Scalability and Accuracy of RNA 3D Module Identification. RECOMB 2020: 186-201
2010 – 2019
- 2018
- [j8]Alexander Churkin, Matan Drory Retwitzer, Vladimir Reinharz
Design of RNAs: comparing programs for inverse RNA folding. Briefings Bioinform. 19(2): 350-358 (2018) - 2017
- [j7]Vladimir Reinharz
A Robust and Efficient Numerical Method for RNA-Mediated Viral Dynamics. Frontiers Appl. Math. Stat. 3: 20 (2017) - [j6]Jason Yao, Vladimir Reinharz
RNA-MoIP: prediction of RNA secondary structure and local 3D motifs from sequence data. Nucleic Acids Res. 45(Webserver-Issue): W440-W444 (2017) - [j5]Jason Yao, Vladimir Reinharz, François Major, Jérôme Waldispühl
RNA-MoIP: prediction of RNA secondary structure and local 3D motifs from sequence data. Nucleic Acids Res. 45(Webserver-Issue): W573 (2017) - 2016
- [j4]Matan Drory Retwitzer, Vladimir Reinharz
incaRNAfbinv: a web server for the fragment-based design of RNA sequences. Nucleic Acids Res. 44(Webserver-Issue): W308-W314 (2016) - 2013
- [j3]Vladimir Reinharz
A weighted sampling algorithm for the design of RNA sequences with targeted secondary structure and nucleotide distribution. Bioinform. 29(13): 308-315 (2013) - [j2]Vladimir Reinharz
Using Structural and Evolutionary Information to Detect and Correct Pyrosequencing Errors in Noncoding RNAs. J. Comput. Biol. 20(11): 905-919 (2013) - [c1]Vladimir Reinharz
A Linear Inside-Outside Algorithm for Correcting Sequencing Errors in Structured RNAs. RECOMB 2013: 199-211 - 2012
- [j1]Vladimir Reinharz
Towards 3D structure prediction of large RNA molecules: an integer programming framework to insert local 3D motifs in RNA secondary structure. Bioinform. 28(12): 207-214 (2012)
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