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John S. Lowengrub
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- affiliation: University of California, Irvine, Department of Mathematics, CA, USA
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2020 – today
- 2024
- [j52]Jinghao Chen, Jesse R. Holt, Elizabeth L. Evans, John S. Lowengrub
, Medha M. Pathak
PIEZO1 regulates leader cell formation and cellular coordination during collective keratinocyte migration. PLoS Comput. Biol. 20(4): 1011855 (2024) - [i11]Ray Zirui Zhang
BiLO: Bilevel Local Operator Learning for PDE inverse problems. CoRR abs/2404.17789 (2024) - 2023
- [j51]Amlan K. Barua
Sharp-interface problem of the Ohta-Kawasaki model for symmetric diblock copolymers. J. Comput. Phys. 481: 112032 (2023) - [j50]Patrick Bilic, Patrick Ferdinand Christ, Hongwei Li
The Liver Tumor Segmentation Benchmark (LiTS). Medical Image Anal. 84: 102680 (2023) - [i10]Ray Zirui Zhang
Personalized Predictions of Glioblastoma Infiltration: Mathematical Models, Physics-Informed Neural Networks and Multimodal Scans. CoRR abs/2311.16536 (2023) - [i9]Michal Balcerak, Ivan Ezhov, Petr Karnakov, Sergey Litvinov, Petros Koumoutsakos, Jonas Weidner, Ray Zirui Zhang
Individualizing Glioma Radiotherapy Planning by Optimization of a Data and Physics Informed Discrete Loss. CoRR abs/2312.05063 (2023) - 2022
- [j49]Zhenlin Guo, Qing Cheng, Ping Lin, Chun Liu, John S. Lowengrub:
Second order approximation for a quasi-incompressible Navier-Stokes Cahn-Hilliard system of two-phase flows with variable density. J. Comput. Phys. 448: 110727 (2022) - [j48]Min-Jhe Lu
Nonlinear simulation of vascular tumor growth with chemotaxis and the control of necrosis. J. Comput. Phys. 459: 111153 (2022) - [j47]Joseph D. Butner
Mathematical modeling of cancer immunotherapy for personalized clinical translation. Nat. Comput. Sci. 2(12): 785-796 (2022) - [j46]Peter Uhl
Spatial dynamics of feedback and feedforward regulation in cell lineages. PLoS Comput. Biol. 18(5) (2022) - [j45]Huaming Yan, Daniel Ramirez-Guerrero, John S. Lowengrub, Min Wu:
Correction: Stress generation, relaxation and size control in confined tumor growth. PLoS Comput. Biol. 18(6) (2022) - [i8]Meng Zhao, Pedro Anjos, John S. Lowengrub, Wenjun Ying, Shuwang Li:
Numerical study on viscous fingering using electric fields in a Hele-Shaw cell. CoRR abs/2201.05956 (2022) - [i7]Xiaoxia Tang, Shuwang Li, John S. Lowengrub, Steven M. Wise:
Phase field modeling and computation of vesicle growth or shrinkage. CoRR abs/2209.13690 (2022) - 2021
- [j44]Huaming Yan
Stress generation, relaxation and size control in confined tumor growth. PLoS Comput. Biol. 17(12) (2021) - [j43]Joseph D. Butner
Corrections to "A multiscale Agent-Based Model of Ductal Carcinoma in Situ". IEEE Trans. Biomed. Eng. 68(2): 736 (2021) - [i6]Amlan K. Barua, Ray Chew, Shuwang Li, John S. Lowengrub, Andreas Münch, Barbara Wagner:
Sharp-interface problem of the Ohta-Kawasaki model for symmetric diblock copolymers. CoRR abs/2107.04366 (2021) - [i5]Min-Jhe Lu, Wenrui Hao, Chun Liu, John S. Lowengrub, Shuwang Li:
Nonlinear simulation of vascular tumor growth with chemotaxis and the control of necrosis. CoRR abs/2107.11701 (2021) - 2020
- [j42]Fei Yu, Zhenlin Guo, John S. Lowengrub:
Higher-order accurate diffuse-domain methods for partial differential equations with Dirichlet boundary conditions in complex, evolving geometries. J. Comput. Phys. 406: 109174 (2020) - [j41]Joseph D. Butner
A Multiscale Agent-Based Model of Ductal Carcinoma In Situ. IEEE Trans. Biomed. Eng. 67(5): 1450-1461 (2020)
2010 – 2019
- 2019
- [j40]Mariano Franco-de-Leon
Boundary integral methods for dispersive equations, Airy flow and the modified Korteweg de Vries equation. Adv. Comput. Math. 45(1): 99-135 (2019) - [j39]Emma Turian, Kai Liu, John S. Lowengrub, Shuwang Li:
Morphological stability of an elastic tumor-host interface. J. Comput. Appl. Math. 362: 410-422 (2019) - [j38]Kai Liu, John S. Lowengrub, Jun Allard
Efficient simulation of thermally fluctuating biopolymers immersed in fluids on 1-micron, 1-second scales. J. Comput. Phys. 386: 248-263 (2019) - [j37]Kai Liu, Brian Chu, Jay M. Newby, Elizabeth L. Read
Hydrodynamics of transient cell-cell contact: The role of membrane permeability and active protrusion length. PLoS Comput. Biol. 15(4) (2019) - [j36]Jana Lipková
Personalized Radiotherapy Design for Glioblastoma: Integrating Mathematical Tumor Models, Multimodal Scans, and Bayesian Inference. IEEE Trans. Medical Imaging 38(8): 1875-1884 (2019) - [i4]Patrick Bilic, Patrick Ferdinand Christ, Eugene Vorontsov, Grzegorz Chlebus, Hao Chen, Qi Dou, Chi-Wing Fu, Xiao Han, Pheng-Ann Heng, Jürgen Hesser, Samuel Kadoury, Tomasz K. Konopczynski, Miao Le, Chunming Li, Xiaomeng Li, Jana Lipková, John S. Lowengrub, Hans Meine, Jan Hendrik Moltz, Chris Pal, Marie Piraud, Xiaojuan Qi, Jin Qi, Markus Rempfler, Karsten Roth, Andrea Schenk
The Liver Tumor Segmentation Benchmark (LiTS). CoRR abs/1901.04056 (2019) - [i3]Min-Jhe Lu, Chun Liu, John S. Lowengrub, Shuwang Li:
Complex far-field geometries determine the stability of solid tumor growth with chemotaxis. CoRR abs/1912.04967 (2019) - 2018
- [j35]Wenqiang Feng, Zhenlin Guo, John S. Lowengrub, Steven M. Wise
A mass-conservative adaptive FAS multigrid solver for cell-centered finite difference methods on block-structured, locally-cartesian grids. J. Comput. Phys. 352: 463-497 (2018) - [j34]Ying Chen, John S. Lowengrub, Jie Shen
Efficient energy stable schemes for isotropic and strongly anisotropic Cahn-Hilliard systems with the Willmore regularization. J. Comput. Phys. 365: 56-73 (2018) - [j33]Wenqiang Feng, Zhen Guan, John S. Lowengrub, Cheng Wang
A Uniquely Solvable, Energy Stable Numerical Scheme for the Functionalized Cahn-Hilliard Equation and Its Convergence Analysis. J. Sci. Comput. 76(3): 1938-1967 (2018) - [j32]Meng Zhao, Xiaofan Li, Wenjun Ying, Andrew Belmonte, John S. Lowengrub, Shuwang Li:
Computation of a Shrinking Interface in a Hele-Shaw Cell. SIAM J. Sci. Comput. 40(4): B1206-B1228 (2018) - [i2]Jana Lipková, Panagiotis Angelikopoulos, Stephen Wu, Esther Alberts, Benedikt Wiestler, Christian Diehl, Christine Preibisch, Thomas Pyka, Stephanie Combs, Panagiotis E. Hadjidoukas, Koen Van Leemput, Petros Koumoutsakos, John S. Lowengrub, Bjoern H. Menze:
Personalized Radiotherapy Planning for Glioma Using Multimodal Bayesian Model Calibration. CoRR abs/1807.00499 (2018) - 2017
- [j31]Huaming Yan
Multiscale Modeling of Glioblastoma Suggests that the Partial Disruption of Vessel/Cancer Stem Cell Crosstalk Can Promote Tumor Regression Without Increasing Invasiveness. IEEE Trans. Biomed. Eng. 64(3): 538-548 (2017) - [i1]Jana Lipková, Markus Rempfler, Patrick Ferdinand Christ, John S. Lowengrub, Bjoern H. Menze:
Automated Unsupervised Segmentation of Liver Lesions in CT scans via Cahn-Hilliard Phase Separation. CoRR abs/1704.02348 (2017) - 2016
- [j30]Xiaoming Zheng
An interface-fitted adaptive mesh method for elliptic problems and its application in free interface problems with surface tension. Adv. Comput. Math. 42(5): 1225-1257 (2016) - [j29]Meng Zhao, Andrew Belmonte, Shuwang Li, Xiaofan Li, John S. Lowengrub:
Nonlinear simulations of elastic fingering in a Hele-Shaw cell. J. Comput. Appl. Math. 307: 394-407 (2016) - [j28]Yucheng Hu, John S. Lowengrub:
Collective Properties of a Transcription Initiation Model Under Varying Environment. J. Comput. Biol. 23(1): 56-66 (2016) - [j27]John S. Lowengrub, Jun Allard, Sebastian Aland
Numerical simulation of endocytosis: Viscous flow driven by membranes with non-uniformly distributed curvature-inducing molecules. J. Comput. Phys. 309: 112-128 (2016) - [j26]Zhen Guan, Vili Heinonen
An energy stable, hexagonal finite difference scheme for the 2D phase field crystal amplitude equations. J. Comput. Phys. 321: 1026-1054 (2016) - [j25]Sameeran Kunche, Huaming Yan, Anne L. Calof
Feedback, Lineages and Self-Organizing Morphogenesis. PLoS Comput. Biol. 12(3) (2016) - 2015
- [j24]Edward Meeds, Michael Chiang
POPE: post optimization posterior evaluation of likelihood free models. BMC Bioinform. 16: 264:1-264:20 (2015) - 2014
- [j23]Zhenlin Guo, Ping Lin, John S. Lowengrub:
A numerical method for the quasi-incompressible Cahn-Hilliard-Navier-Stokes equations for variable density flows with a discrete energy law. J. Comput. Phys. 276: 486-507 (2014) - [j22]Sebastian Aland
Diffuse interface models of locally inextensible vesicles in a viscous fluid. J. Comput. Phys. 277: 32-47 (2014) - [j21]Zhen Guan, John S. Lowengrub, Cheng Wang, Steven M. Wise
Second order convex splitting schemes for periodic nonlocal Cahn-Hilliard and Allen-Cahn equations. J. Comput. Phys. 277: 48-71 (2014) - 2013
- [j20]Arvind Baskaran, Zhengzheng Hu, John S. Lowengrub, Cheng Wang, Steven M. Wise
Energy stable and efficient finite-difference nonlinear multigrid schemes for the modified phase field crystal equation. J. Comput. Phys. 250: 270-292 (2013) - [j19]Arvind Baskaran, John S. Lowengrub, Cheng Wang, Steven M. Wise
Convergence Analysis of a Second Order Convex Splitting Scheme for the Modified Phase Field Crystal Equation. SIAM J. Numer. Anal. 51(5): 2851-2873 (2013) - 2012
- [j18]Jian-Jun Xu, Yin Yang, John S. Lowengrub:
A level-set continuum method for two-phase flows with insoluble surfactant. J. Comput. Phys. 231(17): 5897-5909 (2012) - [j17]Xiangxin Zhu, Max Welling, Fang Jin, John S. Lowengrub:
Predicting simulation parameters of biological systems using a Gaussian process model. Stat. Anal. Data Min. 5(6): 509-522 (2012) - [j16]Andong He, John S. Lowengrub, Andrew Belmonte:
Modeling an Elastic Fingering Instability in a Reactive Hele-Shaw Flow. SIAM J. Appl. Math. 72(3): 842-856 (2012) - 2011
- [j15]Knut Erik Teigen
A diffuse-interface method for two-phase flows with soluble surfactants. J. Comput. Phys. 230(2): 375-393 (2011) - [j14]Shingyu Leung
A grid based particle method for solving partial differential equations on evolving surfaces and modeling high order geometrical motion. J. Comput. Phys. 230(7): 2540-2561 (2011) - [j13]Steven M. Wise
An adaptive multigrid algorithm for simulating solid tumor growth using mixture models. Math. Comput. Model. 53(1-2): 1-20 (2011) - 2010
- [j12]Jin Sun Sohn, Yu-Hau Tseng, Shuwang Li, Axel Voigt
Dynamics of multicomponent vesicles in a viscous fluid. J. Comput. Phys. 229(1): 119-144 (2010)
2000 – 2009
- 2009
- [j11]Zhengzheng Hu, Steven M. Wise
Stable and efficient finite-difference nonlinear-multigrid schemes for the phase field crystal equation. J. Comput. Phys. 228(15): 5323-5339 (2009) - [j10]Steven M. Wise, Cheng Wang, John S. Lowengrub:
An Energy-Stable and Convergent Finite-Difference Scheme for the Phase Field Crystal Equation. SIAM J. Numer. Anal. 47(3): 2269-2288 (2009) - 2008
- [j9]Paul Macklin
A New Ghost Cell/Level Set Method for Moving Boundary Problems: Application to Tumor Growth. J. Sci. Comput. 35(2-3): 266-299 (2008) - 2007
- [j8]Shuwang Li, John S. Lowengrub, Perry H. Leo:
A rescaling scheme with application to the long-time simulation of viscous fingering in a Hele-Shaw cell. J. Comput. Phys. 225(1): 554-567 (2007) - [j7]Steven M. Wise
Solving the regularized, strongly anisotropic Cahn-Hilliard equation by an adaptive nonlinear multigrid method. J. Comput. Phys. 226(1): 414-446 (2007) - 2006
- [j6]Jian-Jun Xu, Zhilin Li
A level-set method for interfacial flows with surfactant. J. Comput. Phys. 212(2): 590-616 (2006) - [j5]Paul Macklin
An improved geometry-aware curvature discretization for level set methods: Application to tumor growth. J. Comput. Phys. 215(2): 392-401 (2006) - [j4]Xiaofeng Yang, Ashley J. James, John S. Lowengrub, Xiaoming Zheng, Vittorio Cristini
An adaptive coupled level-set/volume-of-fluid interface capturing method for unstructured triangular grids. J. Comput. Phys. 217(2): 364-394 (2006)
1990 – 1999
- 1999
- [j3]Russel E. Caflisch, Thomas Y. Hou, John S. Lowengrub:
Almost optimal convergence of the point vortex method for vortex sheets using numerical filtering. Math. Comput. 68(228): 1465-1496 (1999) - 1993
- [j2]Thomas Y. Hou, John S. Lowengrub, Michael J. Shelley:
The Convergence of an Exact Desingularization for Vortex Methods. SIAM J. Sci. Comput. 14(1): 1-18 (1993) - [j1]John S. Lowengrub, Michael J. Shelley, Barry Merriman:
High-Order and Efficient Methods for the Vorticity Formulation of the Euler Equations. SIAM J. Sci. Comput. 14(5): 1107-1142 (1993)
Coauthor Index
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