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Journal of Biomedical Informatics, Volume 41
Volume 41, Number 1, February 2008
- Jau-Huei Lin, Peter J. Haug:
Exploiting missing clinical data in Bayesian network modeling for predicting medical problems. 1-14 - Fatma Latifoglu, Kemal Polat
, Sadik Kara
Medical diagnosis of atherosclerosis from Carotid Artery Doppler Signals using principal component analysis (PCA), k-NN based weighting pre-processing and Artificial Immune Recognition System (AIRS). 15-23 - Paolo Contiero
Comparison with manual registration reveals satisfactory completeness and efficiency of a computerized cancer registration system. 24-32 - Joan Valls, Mònica Grau, Xavier Solé, Pilar Hernández, David Montaner, Joaquín Dopazo, Miguel A. Peinado, Gabriel Capellá, Víctor Moreno, Miguel Angel Pujana:
CLEAR-test: Combining inference for differential expression and variability in microarray data analysis. 33-45 - Guy Tsafnat
The Field Representation Language. 46-57 - Mark J. Elliot
Statistical disclosure control architectures for patient records in biomedical information systems. 58-64 - Razib M. Othman, Safaai Deris, Rosli Md. Illias:
A genetic similarity algorithm for searching the Gene Ontology terms and annotating anonymous protein sequences. 65-81 - Magnus Irestig, Toomas Timpka
Politics and technology in health information systems development: A discourse analysis of conflicts addressed in a systems design group. 82-94 - Hau-San Wong
Constructing the gene regulation-level representation of microarray data for cancer classification. 95-105 - George A. Komatsoulis
caCORE version 3: Implementation of a model driven, service-oriented architecture for semantic interoperability. 106-123 - Hyunjin Shin, Bryan Sheu, Maria Joseph, Mia K. Markey
Guilt-by-association feature selection: Identifying biomarkers from proteomic profiles. 124-136 - A. Narasimhadevara, Thiruvengadam Radhakrishnan, B. Leung, R. Jayakumar:
On designing a usable interactive system to support transplant nursing. 137-151 - Nathan C. Hulse, Guilherme Del Fiol
Towards an on-demand peer feedback system for a clinical knowledge base: A case study with order sets. 152-164 - Themis P. Exarchos, Costas Papaloukas
Mining sequential patterns for protein fold recognition. 165-179 - Mor Peleg
Mapping computerized clinical guidelines to electronic medical records: Knowledge-data ontological mapper (KDOM). 180-201 - Theodosios Theodosiou
Non-linear correlation of content and metadata information extracted from biomedical article datasets. 202-216
Volume 41, Number 2, April 2008
- Lefteris Gortzis, George Nikiforidis:
Tracing and cataloguing knowledge in an e-health cardiology environment. 217-223 - Yanna Shen, Christina Adamou, John N. Dowling, Gregory F. Cooper:
Estimating the joint disease outbreak-detection time when an automated biosurveillance system is augmenting traditional clinical case finding. 224-231 - Jihun Kim, Hee-Joon Chung, Yong Jung, Kack-Kyun Kim, Ju Han Kim:
BioLattice: A framework for the biological interpretation of microarray gene expression data using concept lattice analysis. 232-241 - Susan Maskery, Hai Hu
A Bayesian derived network of breast pathology co-occurrence. 242-250 - Ion-Florin Talos, Daniel L. Rubin, Michael Halle, Mark A. Musen
A prototype symbolic model of canonical functional neuroanatomy of the motor system. 251-263 - Xingwei Wang, Shibo Li, Hong Liu, Marc C. Wood, Wei R. Chen, Bin Zheng
Automated identification of analyzable metaphase chromosomes depicted on microscopic digital images. 264-271 - Bo Geng, Xiaobo Zhou, Jinmin Zhu, Y. S. Hung, Stephen T. C. Wong:
Comparison of reversible-jump Markov-chain-Monte-Carlo learning approach with other methods for missing enzyme identification. 272-281 - Waclaw Kusnierczyk:
Taxonomy-based partitioning of the Gene Ontology. 282-292 - Yan Chen, Yehoshua Perl, James Geller, George Hripcsak, Li Zhang:
Comparing and consolidating two heuristic metaschemas. 293-317 - Siriwan Suebnukarn
A collaborative medical case authoring environment based on the UMLS. 318-326 - Sofie Pilemalm, Toomas Timpka
Third generation participatory design in health informatics - Making user participation applicable to large-scale information system projects. 327-339 - Hsin-Min Lu
Ontology-enhanced automatic chief complaint classification for syndromic surveillance. 340-356 - Peter W. Hung, Stephen B. Johnson
A multi-level model of information seeking in the clinical domain. 357-370 - Chih-Lin Chi, W. Nick Street, Marcia M. Ward
Building a hospital referral expert system with a Prediction and Optimization-Based Decision Support System algorithm. 371-386 - Dean F. Sittig
Grand challenges in clinical decision support. 387-392
Volume 41, Number 3, June 2008
- Tze-Yun Leong
Computer-based decision support for critical and emergency care. 409-412
- Vimla L. Patel, Jiajie Zhang, Nicole A. Yoskowitz, Robert A. Green, Osman R. Sayan:
Translational cognition for decision support in critical care environments: A review. 413-431 - María M. Abad-Grau
Evolution and challenges in the design of computational systems for triage assistance. 432-441
- Anton Aboukhalil, Larry Nielsen, Mohammed Saeed, Roger G. Mark, Gari D. Clifford:
Reducing false alarm rates for critical arrhythmias using the arterial blood pressure waveform. 442-451 - Ying Zhang, Peter Szolovits
Patient-specific learning in real time for adaptive monitoring in critical care. 452-460 - D. Sorenson, Colin K. Grissom, L. Carpenter, A. Austin, Katherine A. Sward
A frame-based representation for a bedside ventilator weaning protocol. 461-468 - Liangyou Chen, Thomas M. McKenna, Andrew T. Reisner, Andrei V. Gribok, Jaques Reifman:
Decision tool for the early diagnosis of trauma patient hypovolemia. 469-478 - Madhu C. Reddy, M. Michael Shabot, Erin Bradner:
Evaluating collaborative features of critical care systems: A methodological study of information technology in surgical intensive care units. 479-487 - Katherine A. Sward
Reasons for declining computerized insulin protocol recommendations: Application of a framework. 488-497
Volume 41, Number 4, August 2008
- Muhammad Shoaib B. Sehgal, Iqbal Gondal
Ameliorative missing value imputation for robust biological knowledge inference. 499-514 - Marcel van Gerven, Babs G. Taal, Peter J. F. Lucas:
Dynamic Bayesian networks as prognostic models for clinical patient management. 515-529 - Xiaogang Ruan, Jinlian Wang, Hui Li, Rhoda E. Perozzi, Edmund F. Perozzi:
The use of logic relationships to model colon cancer gene expression networks with mRNA microarray data. 530-543 - Paola Berchialla
Web-based tool for injury risk assessment of foreign body injuries in children. 544-556 - Isabella Scandurra, Maria Hägglund
From user needs to system specifications: Multi-disciplinary thematic seminars as a collaborative design method for development of health information systems. 557-569 - Hsi-Che Liu, Chien-Yu Chen
Cross-generation and cross-laboratory predictions of Affymetrix microarrays by rank-based methods. 570-579 - Zhihao Yang, Hongfei Lin, Yanpeng Li:
Exploiting the contextual cues for bio-entity name recognition in biomedical literature. 580-587 - Igor Trajkovski, Nada Lavrac, Jakub Tolar
SEGS: Search for enriched gene sets in microarray data. 588-601 - Weixiang Liu, Kehong Yuan, Datian Ye:
Reducing microarray data via nonnegative matrix factorization for visualization and clustering analysis. 602-606 - C. George Priya Doss
Identification and structural comparison of deleterious mutations in nsSNPs of ABL1 gene in chronic myeloid leukemia: A bio-informatics study. 607-612 - Jagan Dara, John N. Dowling, Debbie A. Travers, Gregory F. Cooper, Wendy Webber Chapman
Evaluation of preprocessing techniques for chief complaint classification. 613-623 - Cornelia M. Ruland, Justin Starren, Torun M. Vatne:
Participatory design with children in the development of a support system for patient-centered care in pediatric oncology. 624-635 - Ben Medlock:
Exploring hedge identification in biomedical literature. 636-654 - Guilherme Del Fiol
Infobuttons and classification models: A method for the automatic selection of on-line information resources to fulfill clinicians' information needs. 655-666 - Vladimir Brtka
Automated extraction of decision rules for leptin dynamics - A rough sets approach. 667-674 - Aykut M. Uslu, Jürgen Stausberg:
Value of the electronic patient record: An analysis of the literature. 675-682
Volume 41, Number 5, October 2008
- Kei-Hoi Cheung, Vipul Kashyap, Joanne Luciano, Huajun Chen, Yimin Wang, Susie Stephens:
Semantic mashup of biomedical data. 683-686 - Carole A. Goble
State of the nation in data integration for bioinformatics. 687-693 - Kei-Hoi Cheung, Kevin Y. Yip
HCLS 2.0/3.0: Health care and life sciences data mashup using Web 2.0/3.0. 694-705 - François Belleau, Marc-Alexandre Nolin, Nicole Tourigny, Philippe Rigault, Jean Morissette:
Bio2RDF: Towards a mashup to build bioinformatics knowledge systems. 706-716 - Ranga Chandra Gudivada, Xiaoyan A. Qu, Jing Chen
Identifying disease-causal genes using Semantic Web-based representation of integrated genomic and phenomic knowledge. 717-729 - Sapna Bafna, Julian Humphries, Daniel P. Miranker:
Schema driven assignment and implementation of life science identifiers (LSIDs). 730-738 - Paolo Ciccarese
The SWAN biomedical discourse ontology. 739-751 - Satya Sanket Sahoo
An ontology-driven semantic mashup of gene and biological pathway information: Application to the domain of nicotine dependence. 752-765 - Lynda Temal, Michel Dojat
Towards an ontology for sharing medical images and regions of interest in neuroimaging. 766-778 - Natalia Villanueva-Rosales, Michel Dumontier
yOWL: An ontology-driven knowledge base for yeast biologists. 779-789 - Yuxin Mao, Zhaohui Wu, Wenya Tian, Xiaohong Jiang, William K. Cheung
Dynamic sub-ontology evolution for traditional Chinese medicine web ontology. 790-805 - Menaka Rajapakse, Kanagasabai Rajaraman
Ontology-centric integration and navigation of the dengue literature. 806-815 - Vít Novácek, Loredana Laera, Siegfried Handschuh
Infrastructure for dynamic knowledge integration - Automated biomedical ontology extension using textual resources. 816-828 - Jiangbo Dang, Amir Hedayati, Ken Hampel, Candemir Toklu:
An ontological knowledge framework for adaptive medical workflow. 829-836 - Michael DiBernardo, Rachel Pottinger, Mark D. Wilkinson
Semi-automatic web service composition for the life sciences using the BioMoby semantic web framework. 837-847 - Francisco García-Sánchez
Combining Semantic Web technologies with Multi-Agent Systems for integrated access to biological resources. 848-859
Volume 41, Number 6, December 2008
- Kishore Mosaliganti, Tony Pan
An imaging workflow for characterizing phenotypical change in large histological mouse model datasets. 863-873 - Mehmet Korürek, Ali Nizam:
A new arrhythmia clustering technique based on Ant Colony Optimization. 874-881 - Hui Cao, Genevieve B. Melton
Use abstracted patient-specific features to assist an information-theoretic measurement to assess similarity between medical cases. 882-888 - Erez Shalom, Yuval Shahar
A quantitative assessment of a methodology for collaborative specification and evaluation of clinical guidelines. 889-903 - Barry Cohen, Marc Oren, Hua Min
Automated comparative auditing of NCIT genomic roles using NCBI. 904-913 - Emma Steele, Allan Tucker
Consensus and Meta-analysis regulatory networks for combining multiple microarray gene expression datasets. 914-926 - Jonathan C. Silverstein
Automatic perceptual color map generation for realistic volume visualization. 927-935 - Nenad S. Mitic, Gordana Pavlovic-Lazetic, Milos V. Beljanski:
Could n-gram analysis contribute to genomic island determination? 936-943 - Ray S. Lin, Susan D. Horn, John F. Hurdle
Single and multiple time-point prediction models in kidney transplant outcomes. 944-952 - Yao-Ting Huang
A new framework for the selection of tag SNPs by multimarker haplotypes. 953-961 - Adam Wright
SANDS: A service-oriented architecture for clinical decision support in a National Health Information Network. 962-981 - Adam Wright
A framework and model for evaluating clinical decision support architectures. 982-990 - Richard Moreau
A method to evaluate skill transfer and acquisition of obstetric gestures based on the curvatures analysis of the position and the orientation. 991-1000 - Eric S. Hall
Modeling the distribution of Nursing Effort using structured Labor and Delivery documentation. 1001-1008 - Brian Christopher Drolet, Kevin B. Johnson:
Categorizing the world of registries. 1009-1020 - Tai-Been Chen
Segmentation of cDNA microarray images by kernel density estimation. 1021-1027 - Mor Peleg
Situation-Based Access Control: Privacy management via modeling of patient data access scenarios. 1028-1040 - Christa E. Bartos, Douglas B. Fridsma, Brian S. Butler
Development of an instrument for measuring clinicians' power perceptions in the workplace. 1041-1049 - Murat Cokol, Raul Rodriguez-Esteban
Visualizing evolution and impact of biomedical fields. 1050-1052 - Ismail Abbas
Optimal design of clinical trials with computer simulation based on results of earlier trials, illustrated with a lipodystrophy trial in HIV patients. 1053-1061 - James E. Andrews, Timothy B. Patrick, Rachel L. Richesson, Hana Brown, Jeffrey P. Krischer:
Comparing heterogeneous SNOMED CT coding of clinical research concepts by examining normalized expressions. 1062-1069 - Trevor Cohen
Simulating expert clinical comprehension: Adapting latent semantic analysis to accurately extract clinical concepts from psychiatric narrative. 1070-1087 - Guergana K. Savova, Anni Coden, Igor L. Sominsky, Rie Johnson, Philip V. Ogren, Piet C. de Groen, Christopher G. Chute:
Word sense disambiguation across two domains: Biomedical literature and clinical notes. 1088-1100
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