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Satya Sanket Sahoo
Satya S. Sahoo
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2020 – today
- 2024
- [j21]Subhashini Sivagnanam
, Steven Yeu, Kai Lin, S. Sakai, F. Garzon, Kenneth Yoshimoto, Katrina Prantzalos, Dipak P. Upadhyaya
Towards building a trustworthy pipeline integrating Neuroscience Gateway and Open Science Chain. Database J. Biol. Databases Curation 2024 (2024) - [j20]Dipak P. Upadhyaya, Yasir Tarabichi, Katrina Prantzalos, Salman Ayub, David C. Kaelber, Satya S. Sahoo:
Machine learning interpretability methods to characterize the importance of hematologic biomarkers in prognosticating patients with suspected infection. Comput. Biol. Medicine 183: 109251 (2024) - [j19]Satya S. Sahoo
Large language models for biomedicine: foundations, opportunities, challenges, and best practices. J. Am. Medical Informatics Assoc. 31(9): 2114-2124 (2024) - [c39]Dipak P. Upadhyaya, Aasef G. Shaikh, Gokce Busra Cakir, Katrina Prantzalos, Pedram Golnari, Fatema F. Ghasia, Satya S. Sahoo:
A 360° View for Large Language Models: Early Detection of Amblyopia in Children Using Multi-view Eye Movement Recordings. AIME (2) 2024: 165-175 - 2023
- [j18]Satya S. Sahoo, Matthew D. Turner, Lei Wang, José Luis Ambite, Abhishek M. Appaji
NeuroBridge ontology: computable provenance metadata to give the long tail of neuroimaging data a FAIR chance for secondary use. Frontiers Neuroinformatics 17 (2023) - [j17]Lei Wang, José Luis Ambite, Abhishek M. Appaji, Janine Bijsterbosch, Jérôme Dockès, Rick Herrick, Alexander Kogan, Howard Lander, Daniel S. Marcus, Stephen Moore, Jean-Baptiste Poline, Arcot Rajasekar, Satya S. Sahoo, Matthew D. Turner, Xiaochen Wang, Yue Wang
NeuroBridge: a prototype platform for discovery of the long-tail neuroimaging data. Frontiers Neuroinformatics 17 (2023) - 2022
- [c38]Xiaochen Wang, Yue Wang, José Luis Ambite, Abhishek M. Appaji, Howard Lander, Stephen Moore, Arcot Rajasekar, Jessica A. D. Turner, Matthew D. Turner, Lei Wang, Satya S. Sahoo:
Enabling Scientific Reproducibility through FAIR Data Management: An ontology-driven deep learning approach in the NeuroBridge Project. AMIA 2022 - 2021
- [c37]Deepak K. Gupta, Massimo Marano, Raj Aurora, James Boyd, Satya S. Sahoo:
Parkinson and movement disorders ontology for clinically-oriented and clinicians-driven data mining of multi-center cohorts in Parkinson's disease. AMIA 2021 - [c36]Katrina Prantzalos, Jianzhe Zhang, Nassim Shafiabadi, Guadalupe Fernandez-BacaVaca, Satya S. Sahoo:
Epilepsy-Connect: An Integrated Knowledgebase for Characterizing Alterations in Consciousness State of Pharmacoresistant Epilepsy Patients. AMIA 2021 - [c35]Jianzhe Zhang, Roland Bauman, Nassim Shafiabadi, Nick Gurski, Guadalupe Fernandez-BacaVaca, Satya S. Sahoo:
Characterizing Brain Network Dynamics using Persistent Homology in Patients with Refractory Epilepsy. AMIA 2021 - 2020
- [c34]Satya S. Sahoo, Arthur L. Gershon, Nassim Shafiabadi, Kaushik Ghosh, Curtis Tatsuoka, Samden D. Lhatoo, Guadalupe Fernandez-BacaVaca:
NeuroIntegrative Connectivity (NIC) Informatics Tool for Brain Functional Connectivity Network Analysis in Cohort Studies. AMIA 2020
2010 – 2019
- 2019
- [j16]Satya S. Sahoo
ProvCaRe: Characterizing scientific reproducibility of biomedical research studies using semantic provenance metadata. Int. J. Medical Informatics 121: 10-18 (2019) - [c33]Xinting Hong, Chang Liu, Hasina Momotaz, Kristin Cassidy, Martha Sajatovic, Satya S. Sahoo:
Enhancing Multi-Center Patient Cohort Studies in the Managing Epilepsy Well (MEW) Network: Integrated Data Integration and Statistical Analysis. AMIA 2019 - [c32]Satya S. Sahoo, Joshua Valdez, Michael Rueschman, Matthew Kim:
Semantic Provenance Graph for Reproducibility of Biomedical Research Studies: Generating and Analyzing Graph Structures from Published Literature. MedInfo 2019: 328-332 - [c31]Vimig Socrates, Arthur L. Gershon, Satya S. Sahoo:
Computation of Brain Functional Connectivity Network Measures in Epilepsy: A Web-Based Platform for EEG Signal Data Processing and Analysis. MedInfo 2019: 1590-1591 - 2018
- [c30]Joshua Valdez, Matthew Kim, Michael Rueschman, Susan Redline, Satya S. Sahoo
Classification of Provenance Triples for Scientific Reproducibility: A Comparative Evaluation of Deep Learning Models in the ProvCaRe Project. IPAW 2018: 30-41 - 2017
- [c29]Arthur L. Gershon, Bilal Zonjy, Curtis Tatsuoka, Kaushik Ghosh, Satya S. Sahoo:
A Flexible Computational Neuroinformatics Workflow for Computing Functional Networks in Epilepsy Neurological Disorder. AMIA 2017 - [c28]Joshua Valdez, Matthew Kim, Michael Rueschman, Vimig Socrates, Satya S. Sahoo:
ProvCaRe Semantic Provenance Knowledgebase: Evaluating Scientific Reproducibility of Research Studies. AMIA 2017 - [c27]Joshua Valdez, Michael Rueschman, Matthew Kim, Sara ArabYarmohammadi
An Extensible Ontology Modeling Approach Using Post Coordinated Expressions for Semantic Provenance in Biomedical Research. OTM Conferences (2) 2017: 337-352 - 2016
- [j15]Satya S. Sahoo
NeuroPigPen: A Scalable Toolkit for Processing Electrophysiological Signal Data in Neuroscience Applications Using Apache Pig. Frontiers Neuroinformatics 10: 18 (2016) - [j14]Satya S. Sahoo
Managing information well: Toward an ontology-driven informatics platform for data sharing and secondary use in epilepsy self-management research centers. Health Informatics J. 22(3): 548-561 (2016) - [j13]Satya S. Sahoo
Insight: An ontology-based integrated database and analysis platform for epilepsy self-management research. Int. J. Medical Informatics 94: 21-30 (2016) - [c26]Satya S. Sahoo, Joshua Valdez, Michael Rueschman:
Scientific Reproducibility in Biomedical Research: Provenance Metadata Ontology for Semantic Annotation of Study Description. AMIA 2016 - [c25]Sheng Yang, Curtis Tatsuoka, Kaushik Ghosh, Nuria Lacuey Lecumberri, Samden D. Lhatoo, Satya Sanket Sahoo:
Comparative Evaluation for Brain Structural Connectivity Approaches: Towards Integrative Neuroinformatics Tool for Epilepsy Clinical Research. CRI 2016 - [c24]Joshua Valdez, Michael Rueschman, Matthew Kim, Susan Redline, Satya S. Sahoo
An Ontology-Enabled Natural Language Processing Pipeline for Provenance Metadata Extraction from Biomedical Text (Short Paper). OTM Conferences 2016: 699-708 - [p2]Satya S. Sahoo
Processing Neurology Clinical Data for Knowledge Discovery: Scalable Data Flows Using Distributed Computing. Machine Learning for Health Informatics 2016: 303-318 - 2015
- [j12]Catherine P. Jayapandian, Annan Wei, Priya Ramesh, Bilal Zonjy, Samden D. Lhatoo, Kenneth A. Loparo
A scalable neuroinformatics data flow for electrophysiological signals using MapReduce. Frontiers Neuroinformatics 9: 4 (2015) - [c23]Priya Ramesh, Annan Wei, Elisabeth Welter, Yvan Bamps, Shelley Stoll, Ashley Bukach, Martha Sajatovic, Satya S. Sahoo
Insight: Semantic provenance and analysis platform for multi-center neurology healthcare research. BIBM 2015: 731-736 - 2014
- [j11]Satya Sanket Sahoo
Epilepsy and seizure ontology: towards an epilepsy informatics infrastructure for clinical research and patient care. J. Am. Medical Informatics Assoc. 21(1): 82-89 (2014) - [j10]Satya Sanket Sahoo
Heart beats in the cloud: distributed analysis of electrophysiological 'Big Data' using cloud computing for epilepsy clinical research. J. Am. Medical Informatics Assoc. 21(2): 263-271 (2014) - [j9]Licong Cui
Complex epilepsy phenotype extraction from narrative clinical discharge summaries. J. Biomed. Informatics 51: 272-279 (2014) - [c22]Guo-Qiang Zhang, Licong Cui, Samden D. Lhatoo, Satya S. Sahoo:
MEDCIS: Multi-Modality Epilepsy Data Capture and Integration System. AMIA 2014 - [c21]Catherine P. Jayapandian, Chien-Hung Chen, Aman Dabir
Domain Ontology As Conceptual Model for Big Data Management: Application in Biomedical Informatics. ER 2014: 144-157 - [c20]Satya Sanket Sahoo:
Biomedical Big Data for Clinical Research and Patient Care: Role of Semantic Computing. ICSC 2014: 3-5 - 2013
- [c19]Catherine P. Jayapandian, Chien-Hung Chen, Alireza Bozorgi, Samden D. Lhatoo, Guo-Qiang Zhang, Satya Sanket Sahoo:
Cloudwave: Distributed Processing of "Big Data" from Electrophysiological Recordings for Epilepsy Clinical Research Using Hadoop. AMIA 2013 - [c18]Amir H. Asiaee, Prashant Doshi, Todd Minning, Satya Sanket Sahoo
From Questions to Effective Answers: On the Utility of Knowledge-Driven Querying Systems for Life Sciences Data. DILS 2013: 38-45 - [c17]Licong Cui
Querying Complex Federated Clinical Data Using Ontological Mapping and Subsumption Reasoning. ICHI 2013: 351-360 - [c16]Catherine P. Jayapandian, Chien-Hung Chen, Alireza Bozorgi, Samden D. Lhatoo, Guo-Qiang Zhang
Electrophysiological Signal Analysis and Visualization using Cloudwave for Epilepsy Clinical Research. MedInfo 2013: 817-821 - 2012
- [j8]Priti Parikh, Jie Zheng, Flora J. Logan-Klumpler, Christian J. Stoeckert Jr., Christos Louis, Pantelis Topalis, Anna V. Protasio
The Ontology for Parasite Lifecycle (OPL): towards a consistent vocabulary of lifecycle stages in parasitic organisms. J. Biomed. Semant. 3: 5 (2012) - [j7]Catherine P. Jayapandian, Meng Zhao, Rob M. Ewing
A semantic proteomics dashboard (SemPoD) for data management in translational research. BMC Syst. Biol. 6(S-3): S20 (2012) - [c15]Licong Cui, Samden D. Lhatoo, Guo-Qiang Zhang, Satya Sanket Sahoo, Alireza Bozorgi:
EpiDEA: Extracting Structured Epilepsy and Seizure Information from Patient Discharge Summaries for Cohort Identification. AMIA 2012 - [c14]Satya Sanket Sahoo, Meng Zhao, Lingyun Luo, Alireza Bozorgi, Deepak K. Gupta, Samden D. Lhatoo, Guo-Qiang Zhang:
OPIC: Ontology-driven Patient Information Capturing System for Epilepsy. AMIA 2012 - [c13]Joseph Teagno, Richard C. Kiefer, Jyotishman Pathak, G. Q. Zhang, Satya Sanket Sahoo:
A Distributed Semantic Web Approach for Cohort Identification. AMIA 2012 - [c12]Guo-Qiang Zhang, Lingyun Luo, Chimezie Thomas-Ogbuji, Cliff A. Joslyn, José Leonardo Villaraza Mejino Jr., Satya Sanket Sahoo:
An Analysis of Multi-type Relational Interactions in FMA Using Graph Motifs with Disjointness Constraints. AMIA 2012 - [c11]Satya Sanket Sahoo, Amit P. Sheth, Guo-Qiang Zhang
Role of semantic web in health informatics. IHI 2012: 881-882 - [e3]Khalid Belhajjame, José Manuél Gómez-Pérez, Paolo Missier, Satya S. Sahoo, Jun Zhao:
Proceedings of the Workshop on Semantic Web for Provenance Management, SWPM@ESWC 2012, Heraklion, Greece, May 28, 2012. CEUR Workshop Proceedings 856, CEUR-WS.org 2012 [contents] - [i1]Amir H. Asiaee, Prashant Doshi, Todd Minning, Satya Sanket Sahoo, Priti Parikh, Amit P. Sheth, Rick L. Tarleton:
From Questions to Effective Answers: On the Utility of Knowledge-Driven Querying Systems for Life Sciences Data. CoRR abs/1210.0595 (2012) - 2011
- [j6]Satya Sanket Sahoo
A unified framework for managing provenance information in translational research. BMC Bioinform. 12: 461 (2011) - [j5]Jun Zhao, Satya Sanket Sahoo
Extending Semantic Provenance into the Web of Data. IEEE Internet Comput. 15(1): 40-48 (2011) - [c10]Satya Sanket Sahoo:
Towards Desiderata for Provenance Ontologies in Biomedicine. ICBO 2011 - 2010
- [j4]Roger S. Barga, Yogesh L. Simmhan, Eran Chinthaka, Satya Sanket Sahoo, Jared Jackson, Nelson Araujo:
Provenance for Scientific Workflows Towards Reproducible Research. IEEE Data Eng. Bull. 33(3): 50-58 (2010) - [c9]Paolo Missier
Janus: From Workflows to Semantic Provenance and Linked Open Data. IPAW 2010: 129-141 - [c8]Helena F. Deus, Jun Zhao, Satya S. Sahoo, Matthias Samwald, Eric Prud'hommeaux, Michael Miller, M. Scott Marshall, Kei-Hoi Cheung:
Provenance of Microarray Experiments for a Better Understanding of Experiment Results. SWPM@ISWC 2010 - [c7]Satya Sanket Sahoo
Provenance Context Entity (PaCE): Scalable Provenance Tracking for Scientific RDF Data. SSDBM 2010: 461-470 - [e2]Satya S. Sahoo, Jun Zhao, Paolo Missier, José Manuél Gómez-Pérez:
Proceedings of the Second International Workshop on the role of Semantic Web in Provenance Management, SWPM@ISWC 2010, Shanghai, China, November 7, 2010. CEUR Workshop Proceedings 670, CEUR-WS.org 2010 [contents]
2000 – 2009
- 2009
- [c6]Satya Sanket Sahoo
Ontology-Driven Provenance Management in eScience: An Application in Parasite Research. OTM Conferences (2) 2009: 992-1009 - [c5]Juliana Freire, Paolo Missier, Satya Sanket Sahoo:
Introduction. SWPM 2009 - [e1]Juliana Freire, Paolo Missier, Satya Sanket Sahoo:
Proceedings of the First International Workshop on the role of Semantic Web in Provenance Management (SWPM 2009), collocated with the 8th International Semantic Web Conference (ISWC-2009), Washington DC, USA, October 25, 2009. CEUR Workshop Proceedings 526, CEUR-WS.org 2009 [contents] - 2008
- [j3]Satya Sanket Sahoo
Semantic Provenance for eScience: Managing the Deluge of Scientific Data. IEEE Internet Comput. 12(4): 46-54 (2008) - [j2]Amit P. Sheth, Cory A. Henson, Satya Sanket Sahoo
Semantic Sensor Web. IEEE Internet Comput. 12(4): 78-83 (2008) - [j1]Satya Sanket Sahoo
An ontology-driven semantic mashup of gene and biological pathway information: Application to the domain of nicotine dependence. J. Biomed. Informatics 41(5): 752-765 (2008) - [c4]Matthew D. Valerio, Satya Sanket Sahoo
Capturing Workflow Event Data for Monitoring, Performance Analysis, and Management of Scientific Workflows. eScience 2008: 626-633 - 2007
- [c3]Satya Sanket Sahoo, Kelly Zeng, Olivier Bodenreider, Amit P. Sheth:
From "Glycosyltransferase" to "Congenital Muscular Dystrophy": Integrating Knowledge from NCBI Entrez Gene and the Gene Ontology. MedInfo 2007: 1260-1264 - 2006
- [c2]Satya Sanket Sahoo
Knowledge modeling and its application in life sciences: a tale of two ontologies. WWW 2006: 317-326 - [p1]Satya Sanket Sahoo, Amit P. Sheth:
Bioinformatics Applications Of Web Services, Web Processes And Role Of Semantics. Semantic Web Services, Processes and Applications 2006: 305-322 - 2005
- [c1]Boanerges Aleman-Meza, Christian Halaschek-Wiener, Satya Sanket Sahoo
Template Based Semantic Similarity for Security Applications. ISI 2005: 621-622
Coauthor Index
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