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Neuroinformatics, Volume 18

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Volume 18, Number 1, January 2020

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Yang Li, Jingyu Liu, Zi-Wen Peng, Can Sheng, Minjeong Kim, Pew-Thian Yap, Chong-Yaw Wee, Dinggang Shen:
Fusion of ULS Group Constrained High- and Low-Order Sparse Functional Connectivity Networks for MCI Classification. 1-24
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Andac Hamamci:
Cellular Automata Tractography: Fast Geodesic Diffusion MR Tractography and Connectivity Based Segmentation on the GPU. 25-41
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Mingliang Wang, Xiaoke Hao, Jiashuang Huang, Kangcheng Wang, Li Shen, Xijia Xu, Daoqiang Zhang, Mingxia Liu:
Hierarchical Structured Sparse Learning for Schizophrenia Identification. 43-57
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Shaina Sta. Cruz, Ivo D. Dinov, Megan M. Herting, Clio González-Zacarías, Hosung Kim, Arthur W. Toga, Farshid Sepehrband:
Imputation Strategy for Reliable Regional MRI Morphological Measurements. 59-70
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Thanh Duc Nguyen, Seungjun Ryu, Muhammad Naveed Iqbal Qureshi, Min Choi, Kun Ho Lee, Boreom Lee:
3D-Deep Learning Based Automatic Diagnosis of Alzheimer's Disease with Joint MMSE Prediction Using Resting-State fMRI. 71-86
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Mohammed A. Syed, Zhi Yang, D. Rangaprakash, Xiaoping Hu, Michael N. Dretsch, Jeffrey S. Katz, Thomas S. Denney, Gopikrishna Deshpande:
DisConICA: a Software Package for Assessing Reproducibility of Brain Networks and their Discriminability across Disorders. 87-107
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Thomas G. Close, Phillip G. D. Ward, Francesco Sforazzini, Wojtek Goscinski, Zhaolin Chen, Gary F. Egan:
A Comprehensive Framework to Capture the Arcana of Neuroimaging Analysis. 109-129
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Florian Ganglberger, Joanna Kaczanowska, Wulf Haubensak, Katja Bühler:
A Data Structure for Real-Time Aggregation Queries of Big Brain Networks. 131-149
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Michaela Spiteri, Jean-Yves Guillemaut, David Windridge, Shivaram Avula, Ram Kumar, Emma Lewis:
Fully-Automated Identification of Imaging Biomarkers for Post-Operative Cerebellar Mutism Syndrome Using Longitudinal Paediatric MRI. 151-162
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Raha M. Dastgheyb, Seung-Wan Yoo, Norman J. Haughey:
MEAnalyzer - a Spike Train Analysis Tool for Multi Electrode Arrays. 163-179

Volume 18, Number 2, April 2020

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Xiaofeng Xu, Yue Guan, Hui Gong, Zhao Feng, Wenjuan Shi, Anan Li, Miao Ren, Jing Yuan, Qingming Luo:
Automated Brain Region Segmentation for Single Cell Resolution Histological Images Based on Markov Random Field. 181-197
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Shiwei Li, Tingwei Quan, Hang Zhou, Qing Huang, Tao Guan, Yijun Chen, Cheng Xu, Hongtao Kang, Anan Li, Ling Fu, Qingming Luo, Hui Gong, Shaoqun Zeng:
Brain-Wide Shape Reconstruction of a Traced Neuron Using the Convex Image Segmentation Method. 199-218
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Juan Eloy Arco, Paloma Díaz-Gutiérrez, Javier Ramírez, María Ruz:
Atlas-Based Classification Algorithms for Identification of Informative Brain Regions in fMRI Data. 219-236
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Qin He, Atena Rezaei, Sampsa Pursiainen:
Zeffiro User Interface for Electromagnetic Brain Imaging: a GPU Accelerated FEM Tool for Forward and Inverse Computations in Matlab. 237-250
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Jiong Wu, Xiaoying Tang:
A Large Deformation Diffeomorphic Framework for Fast Brain Image Registration via Parallel Computing and Optimization. 251-266
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Chi-Tin Shih, Yen-Jen Lin, Cheng-Te Wang, Ting-Yuan Wang, Chih-Chen Chen, Ta-Shun Su, Chung-Chuan Lo, Ann-Shyn Chiang:
Diverse Community Structures in the Neuronal-Level Connectome of the Drosophila Brain. 267-281
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Mark L. C. M. Bruurmijn, Wouter Schellekens, Mathijs Raemaekers, Nick F. Ramsey:
A Novel 2D Standard Cartesian Representation for the Human Sensorimotor Cortex. 283-293
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Jiajia Zhao, Chao Tang, Jingxin Nie:
Functional Parcellation of Individual Cerebral Cortex Based on Functional MRI. 295-306
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Robert Ciszek, Pedro Andrade, Jesse Tapiala, Asla Pitkänen, Xavier Ekolle Ndode-Ekane:
Web Application for Quantification of Traumatic Brain Injury-Induced Cortical Lesions in Adult Mice. 307-317
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Hancan Zhu, Ehsan Adeli, Feng Shi, Dinggang Shen:
FCN Based Label Correction for Multi-Atlas Guided Organ Segmentation. 319-331
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Baris Kanber, James K. Ruffle, M. Jorge Cardoso, Sébastien Ourselin, Olga Ciccarelli:
Neurosense: deep sensing of full or near-full coverage head/brain scans in human magnetic resonance imaging. 333-336

Volume 18, Number 3, June 2020

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Giorgio A. Ascoli:
Neuroinformatics in the Time of Coronavirus. 337-338
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Gustavo S. P. Pamplona, Bruno Hebling Vieira, Frank Scharnowski, Carlos Ernesto Garrido Salmon:
Personode: A Toolbox for ICA Map Classification and Individualized ROI Definition. 339-349
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Jeremy A. Taylor, Marta I. Garrido:
Porthole and Stormcloud: Tools for Visualisation of Spatiotemporal M/EEG Statistics. 351-363
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Nathaniel D. Sisterson, Thomas A. Wozny, Vasileios Kokkinos, Anto Bagic, Alexandra P. Urban, Robert Mark Richardson:
A Rational Approach to Understanding and Evaluating Responsive Neurostimulation. 365-375
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Manuel Reyes-Sanchez, Rodrigo Amaducci, Irene Elices, Francisco de Borja Rodríguez Ortiz, Pablo Varona:
Automatic Adaptation of Model Neurons and Connections to Build Hybrid Circuits with Living Networks. 377-393
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Yikang Liu, Hayreddin Said Unsal, Yi Tao, Nanyin Zhang:
Automatic Brain Extraction for Rodent MRI Images. 395-406
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Francesco Cremonesi, Felix Schürmann:
Understanding Computational Costs of Cellular-Level Brain Tissue Simulations Through Analytical Performance Models. 407-428
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Cassidy M. Fiford, Carole H. Sudre, Hugh Pemberton, Phoebe Walsh, Emily N. Manning, Ian B. Malone, Jennifer Nicholas, Willem H. Bouvy, Owen T. Carmichael, Geert Jan Biessels, M. Jorge Cardoso, Josephine Barnes:
Automated White Matter Hyperintensity Segmentation Using Bayesian Model Selection: Assessment and Correlations with Cognitive Change. 429-449
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Taylor Bolt, Jason S. Nomi, Rachel Arens, Shruti Gopal Vij, Michael C. Riedel, Taylor Salo, Angela R. Laird, Simon B. Eickhoff, Lucina Q. Uddin:
Ontological Dimensions of Cognitive-Neural Mappings. 451-463
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Reza Foodeh, Saeed Ebadollahi, Mohammad Reza Daliri:
Regularized Partial Least Square Regression for Continuous Decoding in Brain-Computer Interfaces. 465-477
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Tamal Batabyal, Barry G. Condron, Scott T. Acton:
NeuroPath2Path: Classification and elastic morphing between neuronal arbors using path-wise similarity. 479-508

Volume 18, Number 4, October 2020

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Frederic Briend, E. Leroux, C. Nathou, Nicolas Delcroix, Sonia Dollfus, Octave Etard:
GeodesicSlicer: a Slicer Toolbox for Targeting Brain Stimulation. 509-516
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Adrià Casamitjana, Verónica Vilaplana, Santi Puch, Asier Aduriz, Carlos López, Grégory Operto, Raffaele Cacciaglia, Carles Falcón, José Luis Molinuevo, Juan Domingo Gispert:
NeAT: a Nonlinear Analysis Toolbox for Neuroimaging. 517-530
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Yanshuai Tu, Liang Mi, Wen Zhang, Haomeng Zhang, Junwei Zhang, Yonghui Fan, Dhruman Goradia, Kewei Chen, Richard J. Caselli, Eric M. Reiman, Xianfeng Gu, Yalin Wang:
Computing Univariate Neurodegenerative Biomarkers with Volumetric Optimal Transportation: A Pilot Study. 531-548
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Wieslaw L. Nowinski:
Human Brain Atlases in Stroke Management. 549-567
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Meron Vermaas, Maria Carla Piastra, Thom F. Oostendorp, Nick F. Ramsey, Paul H. E. Tiesinga:
FEMfuns: A Volume Conduction Modeling Pipeline that Includes Resistive, Capacitive or Dispersive Tissue and Electrodes. 569-580
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Netanel Ofer, Orit Shefi, Gur Yaari:
Axonal Tree Morphology and Signal Propagation Dynamics Improve Interneuron Classification. 581-590
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Sophie Laturnus, Dmitry Kobak, Philipp Berens:
A Systematic Evaluation of Interneuron Morphology Representations for Cell Type Discrimination. 591-609
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Nestor Timonidis, Rembrandt Bakker, Paul H. E. Tiesinga:
Prediction of a Cell-Class-Specific Mouse Mesoconnectome Using Gene Expression Data. 611-626
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Corentin Mercier, Sylvain Rousseau, Pietro Gori, Isabelle Bloch, Tamy Boubekeur:
QFib: Fast and Efficient Brain Tractogram Compression. 627-640
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Carlos Sevilla-Salcedo, Vanessa Gómez-Verdejo, Jussi Tohka:
Regularized Bagged Canonical Component Analysis for Multiclass Learning in Brain Imaging. 641-659
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Adam Gorlewicz, Katarzyna Krawczyk, Andrzej A. Szczepankiewicz, Pawel Trzaskoma, Christophe Mulle, Grzegorz M. Wilczynski:
Colocalization Colormap -an ImageJ Plugin for the Quantification and Visualization of Colocalized Signals. 661-664

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