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Neuroinformatics, Volume 14

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Volume 14, Number 1, January 2016

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Erik De Schutter:
Neuroinformatics for Degenerate Brains. 1-3
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Marco Ganzetti, Nicole Wenderoth, Dante Mantini:
Quantitative Evaluation of Intensity Inhomogeneity Correction Methods for Structural MR Brain Images. 5-21
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Victoria J. Hodge, Mark Jessop, Martyn Fletcher, Michael Weeks, Aaron Turner, Thomas W. Jackson, Colin Ingram, Leslie Smith, Jim Austin:
A Digital Repository and Execution Platform for Interactive Scholarly Publications in Neuroscience. 23-40
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Zhi Zhou, Xiaoxiao Liu, Brian Long, Hanchuan Peng:
TReMAP: Automatic 3D Neuron Reconstruction Based on Tracing, Reverse Mapping and Assembling of 2D Projections. 41-50
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Javier Andreu-Perez, Celine Solnais, Kumuthan Sriskandarajah:
EALab (Eye Activity Lab): a MATLAB Toolbox for Variable Extraction, Multivariate Analysis and Classification of Eye-Movement Data. 51-67
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Wai Yen Loh, Alan Connelly, Jeanie L. Y. Cheong, Alicia J. Spittle, Jian Chen, Christopher L. Adamson, Zohra M. Ahmadzai, Lillian Gabra Fam, Sandra Rees, Katherine J. Lee, Lex W. Doyle, Peter J. Anderson, Deanne K. Thompson:
A New MRI-Based Pediatric Subcortical Segmentation Technique (PSST). 69-81
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Qi Wang, Rong Chen, Joseph F. JáJá, Yu Jin, L. Elliot Hong, Edward H. Herskovits:
Connectivity-Based Brain Parcellation - A Connectivity-Based Atlas for Schizophrenia Research. 83-97
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Vahab Youssofzadeh, Girijesh Prasad, Muhammad Naeem, KongFatt Wong-Lin:
Temporal Information of Directed Causal Connectivity in Multi-Trial ERP Data using Partial Granger Causality. 99-120
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Sen Song, F. W. Grillo, J. Xi, V. Ferretti, G. Gao, Vincenzo De Paola:
EPBscore: a Novel Method for Computer-Assisted Analysis of Axonal Structure and Dynamics. 121-127

Volume 14, Number 2, April 2016

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David N. Kennedy:
The Social Life of Data. 129-130
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Zhenyu Tang, Yong Fan:
Groupwise Image Registration Guided by a Dynamic Digraph of Images. 131-145
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Subhasis Ray, Chaitanya Chintaluri, Upinder S. Bhalla, Daniel K. Wójcik:
NSDF: Neuroscience Simulation Data Format. 147-167
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Anita E. Bandrowski, Matthew H. Brush, Jeffrey S. Grethe, Melissa A. Haendel, David N. Kennedy, Sean L. Hill, Patrick R. Hof, Maryann E. Martone, Maaike Pols, Serena S. Tan, Nicole L. Washington, Elena V. Zudilova-Seinstra, Nicole A. Vasilevsky:
The Resource Identification Initiative: A Cultural Shift in Publishing. 169-182
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Joseph A. Maldjian, Carol A. Shively, Michael A. Nader, David P. Friedman, Christopher T. Whitlow:
Multi-Atlas Library for Eliminating Normalization Failures in Non-Human Primates. 183-190
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Rong Chen, Erika Nixon, Edward Herskovits:
Advanced Connectivity Analysis (ACA): a Large Scale Functional Connectivity Data Mining Environment. 191-199
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Miroslav Radojevic, Ihor Smal, Erik Meijering:
Fuzzy-Logic Based Detection and Characterization of Junctions and Terminations in Fluorescence Microscopy Images of Neurons. 201-219
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Martin Trapp, Florian Schulze, Alexey A. Novikov, Laszlo Tirian, Barry J. Dickson, Katja Bühler:
Adaptive and Background-Aware GAL4 Expression Enhancement of Co-registered Confocal Microscopy Images. 221-233
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Pablo Márquez-Neila, Luis Baumela, Juncal González-Soriano, José-Rodrigo Rodríguez, Javier DeFelipe, Ángel Merchán-Pérez:
A Fast Method for the Segmentation of Synaptic Junctions and Mitochondria in Serial Electron Microscopic Images of the Brain. 235-250

Volume 14, Number 3, July 2016

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Giorgio A. Ascoli:
On the Data-Driven Road from Neurology to Neuronomy. 251-252
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Grégory Operto, Marie Chupin, Bénédicte Batrancourt, Marie Odile Habert, Olivier Colliot, Habib Benali, Cyril Poupon, Catherine Champseix, Christine Delmaire, Marie Sullivan, Denis Rivière, Mélanie Pélégrini-Issac, Vincent Perlbarg, Régine Trébossen, Michel Bottlaender, Vincent Frouin, Antoine Grigis, Dimitri Papadopoulos-Orfanos, Hugo Dary, Ludovic Fillon, Chabha Azouani, Ali Bouyahia, Clara Fischer, Lydie Edward, Mathilde Bouin, Urielle Thoprakarn, Jinpeng Li, Leila Makkaoui, Sylvain Poret, Carole Dufouil, Vincent Bouteloup, Gaël Chételat, Bruno Dubois, Stéphane Lehéricy, Jean-François Mangin, Yann Cointepas:
CATI: A Large Distributed Infrastructure for the Neuroimaging of Cohorts. 253-264
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Piotr Majka, Daniel K. Wójcik:
Possum - A Framework for Three-Dimensional Reconstruction of Brain Images from Serial Sections. 265-278
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Jussi Tohka, Elaheh Moradi, Heikki Huttunen:
Comparison of Feature Selection Techniques in Machine Learning for Anatomical Brain MRI in Dementia. 279-296
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Rebecca E. Foulger, Paul Denny, John Hardy, Maria Jesus Martin, Tony Sawford, Ruth C. Lovering:
Using the Gene Ontology to Annotate Key Players in Parkinson's Disease. 297-304
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Mikhail Milchenko, Abraham Z. Snyder, Pamela LaMontagne, Joshua S. Shimony, Tammie L. S. Benzinger, Sarah Jost Fouke, Daniel S. Marcus:
Heterogeneous Optimization Framework: Reproducible Preprocessing of Multi-Spectral Clinical MRI for Neuro-Oncology Imaging Research. 305-317
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Andrew Melbourne, Nicolas Toussaint, David Owen, Ivor J. A. Simpson, Thanasis Anthopoulos, Enrico De Vita, David Atkinson, Sébastien Ourselin:
NiftyFit: a Software Package for Multi-parametric Model-Fitting of 4D Magnetic Resonance Imaging Data. 319-337
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Chao-Gan Yan, Xindi Wang, Xi-Nian Zuo, Yufeng Zang:
DPABI: Data Processing & Analysis for (Resting-State) Brain Imaging. 339-351

Volume 14, Number 4, October 2016

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Ludovica Acciai, Paolo Soda, Giulio Iannello:
Automated Neuron Tracing Methods: An Updated Account. 353-367
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Sailesh Conjeti, Sepideh Mesbah, Mohammadreza Negahdar, Philipp L. Rautenberg, Shaoting Zhang, Nassir Navab, Amin Katouzian:
Neuron-Miner: An Advanced Tool for Morphological Search and Retrieval in Neuroscientific Image Databases. 369-385
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Siqi Liu, Donghao Zhang, Sidong Liu, Dagan Feng, Hanchuan Peng, Weidong Cai:
Rivulet: 3D Neuron Morphology Tracing with Iterative Back-Tracking. 387-401
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Ziga Lesjak, Franjo Pernus, Bostjan Likar, Ziga Spiclin:
Validation of White-Matter Lesion Change Detection Methods on a Novel Publicly Available MRI Image Database. 403-420
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Huiyuan Huang, Zhongxiang Ding, Dewang Mao, Jianhua Yuan, Fangmei Zhu, Shuda Chen, Yan Xu, Lin Lou, Xiaoyan Feng, Le Qi, Wusi Qiu, Han Zhang, Yufeng Zang:
PreSurgMapp: a MATLAB Toolbox for Presurgical Mapping of Eloquent Functional Areas Based on Task-Related and Resting-State Functional MRI. 421-438
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Xiaoke Hao, Xiaohui Yao, Jingwen Yan, Shannon L. Risacher, Andrew J. Saykin, Daoqiang Zhang, Li Shen:
Identifying Multimodal Intermediate Phenotypes Between Genetic Risk Factors and Disease Status in Alzheimer's Disease. 439-452
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Laura Anton-Sanchez, Concha Bielza, Ruth Benavides-Piccione, Javier DeFelipe, Pedro Larrañaga:
Dendritic and Axonal Wiring Optimization of Cortical GABAergic Interneurons. 453-464
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Pankaj K. Singh, Pooran Singh Negi, Fernanda Laezza, Manos Papadakis, Demetrio Labate:
Multiscale Analysis of Neurite Orientation and Spatial Organization in Neuronal Images. 465-477
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Márton Gulyás, Norbert Bencsik, Szilvia Pusztai, Hanna Liliom, Katalin Schlett:
AnimalTracker: An ImageJ-Based Tracking API to Create a Customized Behaviour Analyser Program. 479-481

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