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PEARC 2019: Chicago, IL, USA
- Thomas R. Furlani:
Proceedings of the Practice and Experience in Advanced Research Computing on Rise of the Machines (learning), PEARC 2019, Chicago, IL, USA, July 28 - August 01, 2019. ACM 2019, ISBN 978-1-4503-7227-5
Advanced Research Computing Software and Applications
- Marvin Newlin, Kyle Smathers, Mark E. DeYoung:
ARC Containers for AI Workloads: Singularity Performance Overhead. 1:1-1:8 - Kent F. Milfeld:
Automatic Modulefile Generation in Environment Modules and Lmod Systems with mkmod. 2:1-2:6 - Ryan S. DeFever, Walter Hanger, Sapna Sarupria, Jon Kilgannon, Amy W. Apon, Linh Bao Ngo:
Building A Scalable Forward Flux Sampling Framework using Big Data and HPC. 3:1-3:8 - Dodi Heryadi, Scott Hampton:
Characterizing Performance Improvement of GPUs. 4:1-4:5 - Ming Li, Peter J. Hawrylak
, John Hale
Combining OpenCL and MPI to Support Heterogeneous Computing on a Cluster. 5:1-5:6 - Kevin Manalo, Levi Baber
Community Collections: A Framework for Openly Sharing Software Stacks Across Research Computing Centers Using Singularity and Lmod. 6:1-6:6 - Noel M. Naughton
Connecting Diffusion MRI to Skeletal Muscle Microstructure: Leveraging Meta-Models and GPU-acceleration. 7:1-7:7 - Sean B. Cleveland
Enabling Real-Time User Interaction For Decision Support: Experiences Extending A Local Agave Platform Metadata Service. 8:1-8:6 - Daniel Tward, Anthony Kolasny, Fatima Khan, Juan Troncoso, Michael I. Miller:
Expanding the Computational Anatomy Gateway from clinical imaging to basic neuroscience research. 9:1-9:6 - Austin Smith, Justin Riley, Muneeba Syed, Milan Kupcevic, Paul Edmon, Scott Yockel
Exploring Untrusted Distributed Storage for High Performance Computing. 10:1-10:6 - Sandeep Puthanveetil Satheesan
Extensible Framework for Analysis of Farm Practices and Programs. 11:1-11:8 - Emre H. Brookes, Joe Stubbs
GenApp, Containers and Abaco: Technical Paper. 12:1-12:8 - Carlos Redondo, Ritu Arora:
Greyfish: An Out-of-the-Box, Reusable, Portable Cloud Storage Service. 13:1-13:6 - Sandra Gesing, Michael G. Zentner, Steve Clark, Claire Stirm, Ben Haley:
HUBzero®: Novel Concepts Applied to Established Computing Infrastructures to Address Communities' Needs. 14:1-14:7 - Dimuthu Wannipurage, Suresh Marru, Marlon E. Pierce, Eroma Abeysinghe, Sudhakar Pamidighantam
Implementing a Flexible, Fault Tolerant Job Management System for Science Gateways. 15:1-15:8 - Dawei Mu, Jon Moran, Hui Zhou, Yifeng Cui, Ronald Hawkins, Mahidhar Tatineni, Steve Campbell:
In-situ Analysis and Visualization of Earthquake Simulation. 16:1-16:5 - Mats Rynge
Integrity Protection for Scientific Workflow Data: Motivation and Initial Experiences. 17:1-17:8 - Subhashini Sivagnanam, Viswanath Nandigam
Introducing the Open Science Chain: Protecting Integrity and Provenance of Research Data. 18:1-18:5 - Jake Rosenberg
Leveraging Elasticsearch to Improve Data Discoverability in Science Gateways. 19:1-19:5 - Frank Betancourt, Kwai Wong, Efosa Asemota, Quindell Marshall, Daniel Nichols
openDIEL: A Parallel Workflow Engine and Data Analytics Framework. 20:1-20:7 - Fangzheng Lyu
Reproducible Hydrological Modeling with CyberGIS-Jupyter: A Case Study on SUMMA. 21:1-21:6 - Yadu N. Babuji, Anna Woodard, Zhuozhao Li
Scalable Parallel Programming in Python with Parsl. 22:1-22:8 - Evgeny Toropov, Paola A. Buitrago
Shuffler: A Large Scale Data Management Tool for Machine Learning in Computer Vision. 23:1-23:8 - David Godlove:
Singularity: Simple, secure containers for compute-driven workloads. 24:1-24:4 - Samuel Cupp
The PreSync Project: Synchronization Automation in the Cactus Framework. 25:1-25:5 - Kenneth Yoshimoto, Nicholas T. Carnevale, Subhashini Sivagnanam, Amitava Majumdar, Mark A. Miller
Web of Trust Tool for Gateway User Vetting. 26:1-26:5 - Srijith Rajamohan, Faiz Abidi:
Web-based Visualization and Querying of Food and Beverage Endorsements by Celebrities. 27:1-27:8
Facilitation of Advanced Research Computing
- Samuel Khuvis
A Continuous Integration-Based Framework for Software Management. 28:1-28:7 - Raychel M. Benson, Edward A. Munsell, Nicholas Bertrand, Michael Baynton, Evan F. Bollig
A Multi-Environment HPC-Scale Puppet Infrastructure for Compliance and Systems Automation. 29:1-29:8 - Adam P. Howard, Gary L. Rogers Jr.
A Policy-Driven License Manager for Controlling Access to Arbitrary Applications. 30:1-30:5 - Nicolas Chan:
A Resource Utilization Analytics Platform Using Grafana and Telegraf for the Savio Supercluster. 31:1-31:6 - Dylan Gardner, Robben Migacz, Brian Haymore:
Arbiter: Dynamically Limiting Resource Consumption on Login Nodes. 32:1-32:7 - Craig A. Stewart, David Y. Hancock
Assessment of financial returns on investments in cyberinfrastructure facilities: A survey of current methods. 33:1-33:8 - Marcelo Ponce, Ramses van Zon, Scott Northrup, Daniel Gruner, Joseph Chen, Fatih Ertinaz, Alexey Fedoseev, Leslie Groer, Fei Mao, Bruno C. Mundim, Mike Nolta, Jaime Pinto, Marco Saldarriaga, Vladimir Slavnic, Erik Spence, Ching-Hsing Yu, W. Richard Peltier:
Deploying a Top-100 Supercomputer for Large Parallel Workloads: the Niagara Supercomputer. 34:1-34:8 - Joe Breen, Lincoln Bryant, Jiahui Chen, Emerson Ford, Robert W. Gardner, Gage Glupker, Skyler Griffith, Ben Kulbertis, Shawn McKee
Developing Edge Services for Federated Infrastructure Using MiniSLATE. 35:1-35:5 - P. Sergio Rivera, James Griffioen, Zongming Fei, Jane Huffman Hayes:
Expressing and Managing Network Policies for Emerging HPC Systems. 36:1-36:7 - Chet Langin:
From BigDog to BigDawg: Transitioning an HPC Cluster for Sustainability. 37:1-37:7 - Christina Maimone
Good Enough Project Management Practices for Researcher Support Projects. 38:1-38:8 - Cameron Kuchta, Reuben D. Budiardja, Verónica G. Vergara Larrea
Harmony: A Harness Monitoring System for the Oak Ridge Leadership Computing Facility. 39:1-39:6 - Patrick Meade, Benedikt Riedel, David Schultz
IceCube's Long Term Archive Software. 40:1-40:5 - Andrew J. Monaghan
Improving regional cyberinfrastructure services through collaboration: Cyberteam for the Rocky Mountain Advanced Computing Consortium. 41:1-41:4 - Evan F. Bollig
Leveraging Public Cloud Services for CLIA-Certified Personalized Medicine Pipelines. 42:1-42:4 - Jason C. Christopher, Gary Jung, Christopher Doane:
Making it More Secure: The Technical and Social Challenges of Expanding the Functionality of an Existing HPC Cluster to Meet University and Federal Data Security Requirements. 43:1-43:5 - Kyle Hutson, Dan Andresen, Adam Tygart, Dave Turner:
Managing a Heterogeneous Cluster. 44:1-44:6 - Joe Breen, Lincoln Bryant, Jiahui Chen, Emerson Ford, Robert W. Gardner, Gage Glupker, Skyler Griffith, Ben Kulbertis, Shawn McKee
Managing Privilege and Access on Federated Edge Platforms. 45:1-45:5 - Justin Stanley:
Mii: An Automated Search Engine for Environment Modules. 46:1-46:5 - Carrie Arnold, Maytal Dahan
ORCID Integration into Science Gateways. 47:1-47:4 - Yinzhi Wang
Performant Container Support for HPC Applications. 48:1-48:6 - William E. Allcock, Benjamin S. Allen, Rachana Ananthakrishnan, Ben Blaiszik, Kyle Chard
Petrel: A Programmatically Accessible Research Data Service. 49:1-49:7 - Peter J. Hawrylak
Practical Cyber-Security Solutions for the Science DMZ. 50:1-50:6 - Maxime Boissonneault, Bart E. Oldeman, Ryan Paul Taylor
Providing a Unified Software Environment for Canada's National Advanced Computing Centers. 51:1-51:6 - Rick Mohr, Adam P. Howard:
Provisioning ZFS Pools On Lustre. 52:1-52:6 - Shivam Trivedi, Lauren Featherstun, Nathan DeMien, Callum Gunlach, Sagar Narayan, Jacob Sharp, Brian Werts, Lipu Wu, Carolyn Ellis
PULSAR: Deploying Network Monitoring and Intrusion Detection for the Science DMZ. 53:1-53:8 - Abhinav Thota, Le Mai Weakley, Ben Fulton
Research Computing Desktops: Demystifying research computing for non-Linux users. 54:1-54:8 - Eric Franz, Hatice Gulcin Ozer, Trey Dockendorf, Venkat Sundar Gadepalli, Amy Webb, Alan Chalker
Scaling R Shiny Apps to Multiple Concurrent Users in a Secured HPC Environment Using Open OnDemand. 55:1-55:7 - Melchizedek Mashiku
Serverless Science Gateway Development for Ca2+ binding site prediction on Amazon Web Services: Case Study. 56:1-56:5 - Satrio Husodo, Jacob Chappell, Vikram Gazula
Slicing and Dicing OpenHPC Infrastructure: Virtual Clusters in OpenStack. 57:1-57:6 - Derek Weitzel
StashCache: A Distributed Caching Federation for the Open Science Grid. 58:1-58:7 - Jonathon Anderson:
The biggest failure of my career: what happened, what we did about it, and how we won't do it again. 59:1-59:5 - Andrew K. Adams, Kay Avila
Trusted CI Experiences in Cybersecurity and Service to Open Science. 60 - Will Powell, E. Jason Riedy, Jeffrey S. Young
Wrangling Rogues: A Case Study on Managing Experimental Post-Moore Architectures. 61
Machine Learning and Artificial Intelligence
- Jun Zhou, Yuhang Lu, Karen Y. Smith
A Framework for Design Identification on Heritage Objects. 62:1-62:8 - Mihaela Dimovska
A Novel Pruning Method for Convolutional Neural Networks Based off Identifying Critical Filters. 63:1-63:7 - Heather M. Williams
Automated Deep Learning Analysis of Purple Martin Videos Depicting Incubation and Provisioning. 64 - Matthew L. Merck, Bingyao Wang, Lixing Liu, Chunjun Jia, Arthur Siqueira, Qiusen Huang, Abhijeet Saraha, Dongsuk Lim, Jiashen Cao, Ramyad Hadidi, Hyesoon Kim:
Characterizing the Execution of Deep Neural Networks on Collaborative Robots and Edge Devices. 65:1-65:6 - Choonhan Youn, Arghya Kusum Das, Seungwon Yang, Joohyun Kim:
Developing a Meta Framework for Key-Value Memory Networks on HPC Clusters. 66:1-66:6 - Amit Gupta, Weijia Xu, Pankaj Jaiswal
Extracting Domain Information using Deep Learning. 67:1-67:7 - Francisco Reveriano, Ünal Sakoglu
Facial Expression Recognition: Utilizing Digital Image Processing, Deep Learning, and High-Performance Computing. 68:1-68:7 - Mohammed Tanash
Improving HPC System Performance by Predicting Job Resources via Supervised Machine Learning. 69:1-69:8 - Tarek M. Zikry
In and out of the nucleus: CNN based segmentation of cell nuclei from images of a translocating sensor. 70:1-70:4 - Daniel Nichols
MagmaDNN: Accelerated Deep Learning Using MAGMA. 71:1-71:6 - Paola A. Buitrago
Open Compass: Accelerating the Adoption of AI in Open Research. 72:1-72:9 - Ryan Chard, Logan T. Ward, Zhuozhao Li
Publishing and Serving Machine Learning Models with DLHub. 73:1-73:7 - William S. Monroe, Thomas Anthony, Murat M. Tanik, Frank M. Skidmore:
Towards a Framework for Validating Machine Learning Results in Medical Imaging: Opening the black box. 74:1-74:5 - Davide Del Vento, Alessandro Fanfarillo
Traps, Pitfalls and Misconceptions of Machine Learning applied to Scientific Disciplines. 75:1-75:8 - Satya Katragadda
VAStream: A Visual Analytics System for Fast Data Streams. 76:1-76:8
Workforce Development and Diversity
- Shelley L. Knuth
An Expansion of the User Support Services for the Research Computing Group at the University of Colorado Boulder. 77:1-77:8 - Marisa Brazil
Campus Champions: Building and sustaining a thriving community of practice around research computing and data. 78:1-78:7 - Henry Neeman, Hussein M. Al-Azzawi, Dana Brunson
Cultivating the Cyberinfrastructure Workforce via an Intermediate/Advanced Virtual Residency Workshop. 79:1-79:8 - Diana V. Dugas
Cyber Infrastructure: Training and Mentoring: A way to engage students in their technology future. 80 - Wirawan Purwanto, Hongyi Wu, Masha Sosonkina, Karina Arcaute:
DeapSECURE: Empowering Students for Data- and Compute-Intensive Research in Cybersecurity through Training. 81 - Tyler Miller, Jung-Han Kimn, Stephen P. Gent
Holistic Summer Undergraduate Research Program in High Performance Computing Research. 82:1-82:7 - Alexa M. Salsbury, Anne M. Brown, Justin A. Lemkul:
Integrating Scientific Programming in Communities of Practice for Students in the Life Sciences. 83:1-83:6 - Susan Mehringer
Mining Online Training Log Data. 84:1-84:8 - Aaron Weeden, Colleen Heinemann, Skylar Thompson, Cameron Foss
The Blue Waters Petascale Institute: Longitudinal Impact and Assessment-Driven Development of an Intensive, Hands-on Curriculum for Teaching Applications in HPC. 85:1-85:8 - Astri Briliyanti, Julie Rojewski, T. J. Van Nguyen, Katy Luchini-Colbry, Dirk Colbry:
The CyberAmbassador Training Program. 86:1-86:6 - Nicholas Berente, Stan Ahalt, James B. Bottum, Dana Brunson
The Professionalization of Cyberinfrastructure Personnel? 87:1-87:6 - Elizabett Hillery, Mark Daniel Ward
Undergraduate Data Science and Diversity at Purdue University. 88:1-88:6
Posters
- James C. Wilgenbusch
A Comprehensive Campus-based Approach to Address the Opportunities and Challenges Posed by Data Intensive Research. 89:1-89:3 - Dimitar Nikolov, Esen Tuna:
A Lightweight Framework for Research Data Management. 90:1-90:4 - Heyi Liu, Mary Loveless:
A Virtual Reality Approach to Pediatric Conflict De-escalation and Anger Management. 91:1-91:5 - Atherton Mook:
Virtual Reality Based Environment for Immersive, Hands-On Learning. 92:1-92:4 - J. Eric Coulter, Richard Knepper
Beyond Campus Bridging: A retrospective of Cyberinfrastructure Integration Efforts. 93:1-93:4 - John-Paul Navarro
Breaking Resource Discovery Barriers. 94:1-94:2 - Anand Padmanabhan, Dandong Yin, Fangzheng Lyu
Bridging Local Cyberinfrastructure and XSEDE with CyberGIS-Jupyter. 95:1-95:3 - Joshua A. Baller
CHURP: A Lightweight CLI Framework to Enable Novice Users to Analyze Sequencing Datasets in Parallel. 96:1-96:5 - Preston M. Smith
Community Clusters or the Cloud: Continuing cost assessment of on-premises and cloud HPC in Higher Education. 97:1-97:4 - Jelena Karapetrovic, Edin Sabic, Diana V. Dugas
Community Outreach and the Discovery HPC Cluster: An Analysis of User Profiles and Growth. 98:1-98:4 - Morgan E. Rodgers, Eric Franz, Alan Chalker
Data Commons to Support University-Wide Cross Discipline Research. 99:1-99:2 - Ian Wittler, Xinlian Liu, Aijuan Dong
Deep Learning Enabled Predicting Modeling of Mortality of Diabetes Mellitus Patients. 100:1-100:6 - Nitin Sukhija, Cory Haser, Elizabeth Bautista:
Employing Augmented Reality for Cybersecurity Operations in High Performance Computing Environments. 101:1-101:4 - Suresh Marru, Marlon E. Pierce, Eroma Abeysinghe, Sudhakar Pamidighantam
Experiences from scaling scale Science Gateway operations. 102:1-102:4 - Tim Shaffer
Flexible Partitioning of Scientific Workflows Using the JX Workflow Language. 103 - Pradeep Periasamy, Vetria L. Byrd
Generative Adversarial Networks for Lupus Diagnostics. 104:1-104:8 - Nitin Sukhija, Sonny Sevin, Jordan Walters, Michael Zieg:
Geo-Grid: Interactive Visualization of Geological Datasets. 105:1-105:4 - Katherine A. Lawrence, Nayiri Mullinix, Maytal Dahan
How the Science Gateways Community Institute Supports Those Who Are Creating Websites to Access Shared Resources. 106:1-106:4 - Bryan Johnston
HPC Ecosystems Project: Facilitating Advanced Research Computing in Africa. 107:1-107:3 - H. David Mathias
Improving a Genetic Algorithm for Route Planning Using Parallelism with Speculative Execution. 108:1-108:5 - Amit Chourasia, Scott Sakai, Michael Shapiro, Steven M. Gallo:
Improving Science Gateways usage reporting for XSEDE. 109:1-109:4 - Meghna Babbar-Sebens, Samuel J. Rivera, Eroma Abeysinghe, Suresh Marru, Marlon E. Pierce
InterACTWEL Science Gateway for Adaptation Planning in Food-Energy-Water Sectors of Local Communities. 110:1-110:4 - Jong Sung Lee, Christopher M. Navarro, Nathan L. Tolbert, Yong Wook Kim, Vara Veera Gowtham Naraharisetty, Chen Wang, Michal Ondrejcek
Interdependent Networked Community Resilience Modeling Environment (INCORE). 111:1-111:2 - Eroma Abeysinghe, Michal Brylinski, Marcus Christie, Suresh Marru, Marlon E. Pierce
LSU Computational System Biology Gateway for Education. 112:1-112:4 - Amy Neeser, Anna Sackmann, Steve Masover:
Navigating an ocean of computational environments: understanding researcher needs in selecting and building virtual machine and container images. 113:1-113:4 - Ranjini Subramanian, Hui Zhang:
Parallel Framework for Data-Intensive Computing with XSEDE. 114:1-114:8 - Trupesh R. Patel
Performance Characterization of Single and Multi GPU Training of U-Net Architecture for Medical Image Segmentation Tasks. 115:1-115:4 - Misha Ahmadian
Reducing Faulty Jobs by Job Submission Verifier in Grid Engine. 116:1-116:8 - Jason Wells
Research Computing at a Business University. 117:1-117:5 - Alex Withers, Brian Bockelman
SciTokens: Demonstrating Capability-Based Access to Remote Scientific Data using HTCondor. 118:1-118:4 - Geoffrey Lentner:
Shared Memory High Throughput Computing with Apache Arrow™. 119:1-119:2 - Ramses van Zon, Marcelo Ponce:
Software-Enhanced Teaching and Visualization Capabilities of an Ultra-High-Resolution Video Wall. 120:1-120:4 - Jie Yang
Spatial Data Decomposition and Load Balancing on HPC Platforms. 121:1-121:4 - Matthew C. Gardner, Ping Luo, Matthew Johnson, Hamid A. Toliyat:
Streamlining Simulation and Data Transfer in a Heterogeneous Environment. 122:1-122:3 - Rob Quick, Larry Lannom, Marina Krenz, Yu Luo:
E-RPID PEARC 2019: The Digital Object Architecture and Enhanced Robust Persistent Identification of Data. 123:1-123:4 - Eric Lease Morgan, Eroma Abeysinghe, Sudhakar Pamidighantam
The Distant Reader: Tool for Reading. 124:1-124:4 - Adison A. Kleinsasser, Sudhakar Pamidighantam
The USD Science Gateway: A Bridge Between Research and Advanced Computing. 125:1-125:4 - Angel Beltre, Shehtab Zaman, Kenneth Chiu, Sudhakar Pamidighantam
Towards Run Time Estimation of the Gaussian Chemistry Code for SEAGrid Science Gateway. 126:1-126:8 - David L. Hart
XSEDE Integration with ORCID for Research Resources. 127:1-127:3
Visualization Showcase
- Andrew J. Solis
An Exploratory Tool for Analyzing Computational Jobs on XSEDE/HPC Resources. 128:1-128:3 - Ngan V. T. Nguyen
HiperViz: Interactive visualization of CPU Temperatures in High Performance Computing Centers. 129:1-129:4 - Ngan V. T. Nguyen
HiperVR: A Virtual Reality model for Visualizing Multidimensional Health Status of High Performance Computing Systems. 130:1-130:4 - Scott Pearse:
Vapor 3: A modern 3D visualization suite for Geophysical Sciences. 131:1-131:3
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