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F. Alex Feltus

Frank Alex Feltus

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affiliation: Clemson University, Department of Genetics and Biochemistry, SC, USA

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2020 – today

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2024
[c11]
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  - conf/iccnc/PresleyWAYBPPAF24
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Justin Presley, Xi Wang, Xusheng Ai, Tianyuan Yu, Tym Brandel, Proyash Podder, Varun Patil, Alex Afanasyev, F. Alex Feltus, Lixia Zhang, Susmit Shannigrahi:
Hydra: A Scalable Decentralized P2P Storage Federation for Large Scientific Datasets. ICNC 2024: 810-816
2023
[c10]
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  - conf/networking/WangAFS23
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Xi Wang, Xusheng Ai, F. Alex Feltus, Susmit Shannigrahi:
GNSGA: A Decentralized Data Replication Algorithm for Big Science Data. IFIP Networking 2023: 1-9
2022
[j13]
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  - journals/bib/BurnsSGHMBSFF22
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Josh J. R. Burns, Benjamin T. Shealy, Mitchell S. Greer, John A. Hadish, Matthew McGowan, Tyler Biggs, Melissa C. Smith, F. Alex Feltus, Stephen P. Ficklin:
Addressing noise in co-expression network construction. Briefings Bioinform. 23(1) (2022)
[j12]
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John A. Hadish, Tyler Biggs, Benjamin T. Shealy, M. Reed Bender, Coleman McKnight, Connor Wytko, Melissa C. Smith, F. Alex Feltus, Loren A. Honaas, Stephen P. Ficklin:
GEMmaker: process massive RNA-seq datasets on heterogeneous computational infrastructure. BMC Bioinform. 23(1): 156 (2022)
[c9]
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  - conf/ccnc/ReddickFS22
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David Reddick, F. Alex Feltus, Susmit Shannigrahi:
Case Study of Attribute Based Access Control for Genomics Data Using Named Data Networking. CCNC 2022: 715-716
[c8]
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David Reddick, Justin Presley, Frank Alex Feltus, Susmit Shannigrahi:
WiP: AABAC - Automated Attribute Based Access Control for Genomics Data. SACMAT 2022: 217-222
[i4]
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  - journals/corr/abs-2204-04591
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David Reddick, Justin Presley, F. Alex Feltus, Susmit Shannigrahi:
AABAC - Automated Attribute Based Access Control for Genomics Data. CoRR abs/2204.04591 (2022)
[i3]
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  - journals/corr/abs-2211-00919
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Justin Presley, Xi Wang, Tym Brandel, Xusheng Ai, Proyash Podder, Tianyuan Yu, Varun Patil, Lixia Zhang, Alex Afanasyev, F. Alex Feltus, Susmit Shannigrahi:
Hydra - A Federated Data Repository over NDN. CoRR abs/2211.00919 (2022)
2021
[j11]
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  - journals/fdata/OgleRMBPFFS21
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Cameron Ogle, David Reddick, Coleman McKnight, Tyler Biggs, Rini Pauly, Stephen P. Ficklin, F. Alex Feltus, Susmit Shannigrahi:
Named Data Networking for Genomics Data Management and Integrated Workflows. Frontiers Big Data 4: 582468 (2021)
[c7]
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  - conf/conext/LiuPYAFS021
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Siqi Liu, Varun Patil, Tianyuan Yu, Alexander Afanasyev, Frank Alex Feltus, Susmit Shannigrahi, Lixia Zhang:
Designing Hydra with Centralized versus Decentralized Control: A Comparative Study. IWCI@CoNEXT 2021: 4-10
[c6]
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  - conf/works-ws/ShealyFS21
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Benjamin T. Shealy, F. Alex Feltus, Melissa C. Smith:
Intelligent Resource Provisioning for Scientific Workflows and HPC. WORKS 2021: 9-16
2020
[j10]
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  - journals/biodb/SpoorWSCACHHJSW20
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Shawna Spoor, Connor Wytko, Brian Soto, Ming Chen, Abdullah Almsaeed, Bradford Condon, Nic Herndon, Heidi Hough, Sook Jung, Meg Staton, Jill L. Wegrzyn, Dorrie Main, F. Alex Feltus, Stephen P. Ficklin:
Tripal and Galaxy: supporting reproducible scientific workflows for community biological databases. Database J. Biol. Databases Curation 2020 (2020)
[j9]
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  - journals/patterns/TargonskiBSHPSF20
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Colin Targonski, M. Reed Bender, Benjamin T. Shealy, Benafsh Husain, Bill Paseman, Melissa C. Smith, F. Alex Feltus:
Cellular State Transformations Using Deep Learning for Precision Medicine Applications. Patterns 1(6): 100087 (2020)

2010 – 2019

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2019
[j8]
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Benjamin T. Shealy, Josh J. R. Burns, Melissa C. Smith, F. Alex Feltus, Stephen P. Ficklin:
GPU Implementation of Pairwise Gaussian Mixture Models for Multi-Modal Gene Co-Expression Networks. IEEE Access 7: 160845-160857 (2019)
[j7]
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  - journals/biodb/FalkHGBRZBRFSFJ19
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Taylor Falk, Nic Herndon, Emily S. Grau, Sean Buehler, Peter Richter, Sumaira Zaman, Eliza M. Baker, Risharde Ramnath, Stephen P. Ficklin, Margaret Staton, Frank Alex Feltus, Sook Jung, Doreen Main, Jill L. Wegrzyn:
Growing and cultivating the forest genomics database, TreeGenes. Database J. Biol. Databases Curation 2019: baz043 (2019)
[j6]
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Shawna Spoor, Chun-Huai Cheng, Lacey-Anne Sanderson, Bradford Condon, Abdullah Almsaeed, Ming Chen, Anthony Bretaudeau, Helena Rasche, Sook Jung, Dorrie Main, Kirstin E. Bett, Margaret Staton, Jill L. Wegrzyn, F. Alex Feltus, Stephen P. Ficklin:
Tripal v3: an ontology-based toolkit for construction of FAIR biological community databases. Database J. Biol. Databases Curation 2019: baz077 (2019)
[c5]
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  - conf/xsede/RyngeVDMBBHWHPF19
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Mats Rynge, Karan Vahi, Ewa Deelman, Anirban Mandal, Ilya Baldin, Omkar Bhide, Randy W. Heiland, Von Welch, Raquel Hill, William L. Poehlman, F. Alex Feltus:
Integrity Protection for Scientific Workflow Data: Motivation and Initial Experiences. PEARC 2019: 17:1-17:8
[i2]
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  - journals/corr/abs-1907-00118
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Colin Targonski, Benjamin T. Shealy, Melissa C. Smith, F. Alex Feltus:
Cellular State Transformations using Generative Adversarial Networks. CoRR abs/1907.00118 (2019)
2018
[j5]
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  - journals/biodb/FalkHGBRZBRFSFJ18
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Taylor Falk, Nic Herndon, Emily S. Grau, Sean Buehler, Peter Richter, Sumaira Zaman, Eliza M. Baker, Risharde Ramnath, Stephen P. Ficklin, Margaret Staton, Frank Alex Feltus, Sook Jung, Doreen Main, Jill L. Wegrzyn:
Growing and cultivating the forest genomics database, TreeGenes. Database J. Biol. Databases Curation 2018: bay084 (2018)
[j4]
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  - journals/fgcs/MillsFL18
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Nicholas Mills, F. Alex Feltus, Walter B. Ligon III:
Maximizing the performance of scientific data transfer by optimizing the interface between parallel file systems and advanced research networks. Future Gener. Comput. Syst. 79: 190-198 (2018)
[c4]
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Susmit Shannigrahi, Chengyu Fan, Christos Papadopoulos, F. Alex Feltus:
NDN-SCI for managing large scale genomics data. ICN 2018: 204-205
2017
[j3]
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  - journals/bioinformatics/WattsF17
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Nicholas A. Watts, Frank Alex Feltus:
Big Data Smart Socket (BDSS): a system that abstracts data transfer habits from end users. Bioinform. 33(4): 627-628 (2017)
[c3]
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  - conf/bibm/PoehlmanRBMF17
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William L. Poehlman, Mats Rynge, D. Balamurugan, Nicholas Mills, Frank Alex Feltus:
OSG-KINC: High-throughput gene co-expression network construction using the open science grid. BIBM 2017: 1827-1831
2013
[j2]
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  - journals/biodb/SandersonFCJFBM13
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Lacey-Anne Sanderson, Stephen P. Ficklin, Chun-Huai Cheng, Sook Jung, F. Alex Feltus, Kirstin E. Bett, Dorrie Main:
Tripal v1.1: a standards-based toolkit for construction of online genetic and genomic databases. Database J. Biol. Databases Curation 2013 (2013)
[j1]
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  - journals/bmcsb/FeltusFGS13
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F. Alex Feltus, Stephen P. Ficklin, Scott M. Gibson, Melissa C. Smith:
Maximizing capture of gene co-expression relationships through pre-clustering of input expression samples: an Arabidopsis case study. BMC Syst. Biol. 7: 44 (2013)
2010
[c2]
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  - conf/bibm/LiFSWL10
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Xumeng Li, F. Alex Feltus, Xiaoqian Sun, James Zijun Wang, Feng Luo:
A non-parameter Ising model for network-based identification of differentially expressed genes in recurrent breast cancer patients. BIBM 2010: 214-217
[c1]
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  - conf/biocomp/LiLWFZ10
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Bo Li, Feng Luo, James Z. Wang, F. Alex Feltus, Jizhong Zhou:
Effectively Integrating Information Content and Structural Relationship to Improve the GO-based Similarity Measure Between Proteins. BIOCOMP 2010: 166-172
[i1]
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  - journals/corr/abs-1001-0958
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Bo Li, James Z. Wang, F. Alex Feltus, Jizhong Zhou, Feng Luo:
Effectively integrating information content and structural relationship to improve the GO-based similarity measure between proteins. CoRR abs/1001.0958 (2010)

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