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Jennifer A. Doherty
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2020 – today
- 2024
- [j11]Alina Peluso
, Ioana Danciu, Hong-Jun Yoon, Jamaludin Mohd-Yusof
Deep learning uncertainty quantification for clinical text classification. J. Biomed. Informatics 149: 104576 (2024) - [j10]Hong-Jun Yoon
Development of message passing-based graph convolutional networks for classifying cancer pathology reports. BMC Medical Informatics Decis. Mak. 24-S(5): 262 (2024) - 2022
- [j9]Albert Rosenberger
Iam hiQ - a novel pair of accuracy indices for imputed genotypes. BMC Bioinform. 23(1): 50 (2022) - [j8]Kevin De Angeli, Shang Gao, Ioana Danciu, Eric B. Durbin, Xiao-Cheng Wu, Antoinette Stroup, Jennifer A. Doherty, Stephen M. Schwartz, Charles Wiggins, Mark Damesyn, Linda Coyle, Lynne Penberthy, Georgia D. Tourassi, Hong-Jun Yoon:
Class imbalance in out-of-distribution datasets: Improving the robustness of the TextCNN for the classification of rare cancer types. J. Biomed. Informatics 125: 103957 (2022) - [j7]Andrew E. Blanchard
A Keyword-Enhanced Approach to Handle Class Imbalance in Clinical Text Classification. IEEE J. Biomed. Health Informatics 26(6): 2796-2803 (2022) - 2021
- [j6]Kevin De Angeli, Shang Gao
Deep active learning for classifying cancer pathology reports. BMC Bioinform. 22(1): 113 (2021) - [j5]Ariel A. Hippen
miQC: An adaptive probabilistic framework for quality control of single-cell RNA-sequencing data. PLoS Comput. Biol. 17(8) (2021) - [j4]Shang Gao
Limitations of Transformers on Clinical Text Classification. IEEE J. Biomed. Health Informatics 25(9): 3596-3607 (2021) - [i2]Mohammed M. Alawad, Shang Gao, Mayanka Chandra Shekar, S. M. Shamimul Hasan, James Blair Christian, Xiao-Cheng Wu, Eric B. Durbin, Jennifer A. Doherty, Antoinette Stroup, Linda Coyle, Lynne Penberthy, Georgia D. Tourassi:
Integration of Domain Knowledge using Medical Knowledge Graph Deep Learning for Cancer Phenotyping. CoRR abs/2101.01337 (2021) - 2020
- [j3]Hong-Jun Yoon, Hilda B. Klasky, John P. Gounley
Accelerated training of bootstrap aggregation-based deep information extraction systems from cancer pathology reports. J. Biomed. Informatics 110: 103564 (2020) - [c2]Hong-Jun Yoon
Privacy-Preserving Knowledge Transfer with Bootstrap Aggregation of Teacher Ensembles. Poly/DMAH@VLDB 2020: 87-99 - [i1]Sayera Dhaubhadel, Jamaludin Mohd-Yusof, Kumkum Ganguly, Gopinath Chennupati, Sunil Thulasidasan, Nicolas W. Hengartner, Brent J. Mumphrey, Eric B. Durbin, Jennifer A. Doherty, Mireille Lemieux, Noah Schaefferkoetter, Georgia D. Tourassi, Linda Coyle, Lynne Penberthy, Benjamin McMahon, Tanmoy Bhattacharya:
Why I'm not Answering: Understanding Determinants of Classification of an Abstaining Classifier for Cancer Pathology Reports. CoRR abs/2009.05094 (2020)
2010 – 2019
- 2019
- [j2]Ellen L. Palmer
Building a tobacco user registry by extracting multiple smoking behaviors from clinical notes. BMC Medical Informatics Decis. Mak. 19(1): 141:1-141:10 (2019) - [j1]Ellen L. Palmer
Assessing data availability and quality within an electronic health record system through external validation against an external clinical data source. BMC Medical Informatics Decis. Mak. 19(1): 143:1-143:9 (2019) - 2018
- [c1]Lia X. Harrington, Gregory P. Way, Jennifer A. Doherty, Casey S. Greene:
Functional network community detection can disaggregate and filter multiple underlying pathways in enrichment analyses. PSB 2018: 157-167
Coauthor Index
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