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Nucleic Acids Research, Volume 26
Volume 26, Number 1, January 1998
- Dennis A. Benson, Mark S. Boguski, David J. Lipman, James Ostell, B. F. Francis Ouellette
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GenBank. 1-7 - Guenter Stoesser, Mary Ann Moseley, Joanne Sleep, Michael McGowran, Maria Garcia-Pastor, Peter Sterk
The EMBL nucleotide sequence database. 8-15 - Yoshio Tateno, Kaoru Fukami-Kobayashi, Satoru Miyazaki, Hideaki Sugawara, Takashi Gojobori:
DNA Data Bank of Japan at work on genome sequence data. 16-20 - Carol Harger, M. P. Skupski, J. Bingham, Andrew D. Farmer, S. Hoisie, Peter T. Hraber
The Genome Sequence DataBase (GSDB): improving data quality and data access. 21-26 - Winona C. Barker, John S. Garavelli
The PIR-International Protein Sequence Database. 27-32 - Hans-Werner Mewes
MIPS: a database for protein sequences and complete genomes. 33-37 - Amos Bairoch
The SWISS-PROT protein sequence data bank and its supplement TrEMBL in 1998. 38-42 - Evgeni Selkov Jr., Yuri Grechkin, Natalia Mikhailova, Evgeni Selkov:
MPW: the Metabolic Pathways Database. 43-45 - Manfred Kröger, Ralf Wahl:
Compilation of DNA sequences of Escherichia coli K12: description of the interactive databases ECD and ECDC. 46-49 - Peter D. Karp
EcoCyc: Encyclopedia of Escherichia coli genes and metabolism. 50-53 - Monica Riley:
Genes and proteins of Escherichia coli K-12. 54 - Araceli M. Huerta, Heladia Salgado, Denis Thieffry
RegulonDB: a database on transcriptional regulation in Escherichia coli. 55-59 - Guy Perrière, Manolo Gouy, Takashi Gojobori:
The non-redundant Bacillus subtilis (NRSub) database: update 1998. 60-62 - Yasukazu Nakamura
CyanoBase, a www database containing the complete nucleotide sequence of the genome of Synechocystis sp. strain PCC6803. 63-67 - Peter E. Hodges, William E. Payne, James I. Garrels:
The Yeast Protein Database (YPD): a curated proteome database for Saccharomyces cerevisiae. 68-72 - J. Michael Cherry
SGD: Saccharomyces Genome Database. 73-79 - David J. Flanders, Shuai Weng, Fabien X. Petel, J. Michael Cherry
AtDB, the Arabidopsis thaliana database, and graphical-web-display of progress by the Arabidopsis Genome Initiative. 80-84 - Elodie Mohr
FlyNets and GIF-DB, two internet databases for molecular interactions in Drosophila melanogaster. 89-93 - Stanley Letovsky, Robert W. Cottingham
GDB: the Human Genome Database. 94-99 - Frédéric Achard, Emmanuel Barillot:
Virgil: a database of rich links between GDB and GenBank. 100-101 - Philip Lijnzaad
The Radiation Hybrid Database. 102-105 - Emmanuel Barillot, Frédéric Guyon
HuGeMap: a distributed and integrated Human Genome Map database. 106-107 - Ulf Leser, Robert Wagner, Andrei Grigoriev
IXDB, an X chromosome integrated database. 108-111 - Andreas M. Kogelnik, Marie T. Lott
MITOMAP: a human mitochondrial genome database--1998 update. 112-115 - Marcella Attimonelli, D. Calo, J. M. Cooper, A. de Montalvo, Flavio Licciulli
The mitBASE human dataset structure. 116-119 - Marcella Attimonelli, D. Calo, A. de Montalvo, Cecilia Lanave, D. Sasanelli, Mila Tommaseo Ponzetta, Cecilia Saccone:
Update of MmtDB: a Metazoa mitochondrial DNA variants database. 120-125 - Oliva Handt, Sonja Meyer, Arndt von Haeseler:
Compilation of human mtDNA control region sequences. 126-129 - Judith A. Blake
The Mouse Genome Database (MGD): a community resource. Status and enhancements. The Mouse Genome Informatics Group. 130-137 - Maria Korab-Laskowska, Pierre A. Rioux, Nicolas Brossard, Timothy G. Littlejohn, Michael W. Gray, B. Franz Lang, Gertraud Burger:
The Organelle Genome Database Project (GOBASE). 138-144 - Maria Giuseppina Campi, Paolo Romano
Molecular Probe Data Base (MPDB). 145-147 - Mathias Sprinzl, Carsten Horn, Melissa Brown, Anatoli Ioudovitch, Sergey Steinberg:
Compilation of tRNA sequences and sequences of tRNA genes. 148-153 - A. Sagliano, Mariateresa Volpicella
A FastA based compilation of higher plant mitochondrial tRNA genes. 154-155 - Maciej Szymanski
5S rRNA Data Bank. 156-159 - Jian Gu
Small RNA database. 160-162 - Kelly P. Williams, David P. Bartel:
The tmRNA Website. 163-165 - Christian Zwieb, Niels Larsen, Jacek Wower:
The tmRNA database (tmRDB). 166-167 - Augustine E. Souza, H. Ulrich Göringer:
The guide RNA database. 168-169 - Larry Simpson, Shirley H. Wang, Otavio H. Thiemann, Juan D. Alfonzo, Dmitri A. Maslov, Herbert A. Avila:
U-insertion/deletion Edited Sequence Database. 170-176 - Niels Larsen, Tore Samuelsson, Christian Zwieb:
The Signal Recognition Particle Database (SRPDB). 177-178 - Yves Van de Peer
Database on the structure of small ribosomal subunit RNA. 179-182 - Peter De Rijk, An Caers, Yves Van de Peer
Database on the structure of large ribosomal subunit RNA. 183-186 - Pavel V. Baranov
The Database of Ribosomal Cross links (DRC). 187-189 - Daniel A. Lafontaine, Stéphane Mercure, Véronique Poisson, Jean-Pierre Perreault:
The viroid and viroid-like RNA database. 190-191 - Graziano Pesole
UTRdb: a specialized database of 5'- and 3'-untranslated regions of eukaryotic mRNAs. 192-195 - James A. McCloskey, Pamela F. Crain:
The RNA modification database--1998. 196-197 - Neal F. Cariello, George R. Douglas, Nancy J. Gorelick, Daniel W. Hart, John D. Wilson, Thierry Soussi
Databases and software for the analysis of mutations in the human p53 gene, human hprt gene and both the lacI and lacZ gene in transgenic rodents. 198-199 - Christophe Béroud
p53 gene mutation: software and database. 200-204 - Pierre Hainaut
IARC Database of p53 gene mutations in human tumors and cell lines: updated compilation, revised formats and new visualisation tools. 205-213 - Z. Sedlacek, Roman Kodet, Annemarie Poustka, Petr Goetz:
A database of germline p53 mutations in cancer-prone families. 214-215 - Geoffrey Kemball-Cook, Edward G. D. Tuddenham
The factor VIII Structure and Mutation Resource Site: HAMSTeRS version 4. 216-219 - Piotr M. Nowacki, Susan Byck, Lynne Prevost, Charles R. Scriver:
PAH Mutation Analysis Consortium Database: 1997. Prototype for relational locus-specific mutation databases. 220-225 - Xavier Cousin
aCHEdb: the database system for ESTHER, the alpha/beta fold family of proteins and the Cholinesterase gene server. 226-228 - Gwenaëlle Collod-Béroud
Marfan Database (third edition): new mutations and new routines for the software. 229-233 - Bruce Gottlieb, Heikki Lehväslaiho, Lenore K. Beitel
The Androgen Receptor Gene Mutations Database. 234-238 - Elisabeth Martinez, David D. Moore, Evan Keller, David Pearce, John P. Vanden Heuvel, Vincent Robinson, Bruce Gottlieb, Paul N. MacDonald, S. Stoney Simons Jr., Eddie Sanchez, Mark Danielsen
The Nuclear Receptor Resource: a growing family. 239-241 - Mauno Vihinen
BTKbase, mutation database for X-linked agammaglobulinemia (XLA). 242-247 - Mathilde Varret
LDLR Database (second edition): new additions to the database and the software, and results of the first molecular analysis. 248-252 - Raymond Dalgleish
The Human Collagen Mutation Database 1998. 253-255 - Christophe Béroud
Software and database for the analysis of mutations in the VHL gene. 256-258 - Alastair Brown, Mark McKie, Veronica van Heyningen
The Human PAX6 Mutation Database. 259-264 - F. Giannelli, P. M. Green, S. S. Sommer, M.-C. Poon, M. Ludwig, Rainer Schwaab, Pieter H. Reitsma, M. Goossens, A. Yoshioka, M. S. Figueiredo, George G. Brownlee:
Haemophilia B: database of point mutations and short additions and deletions--eighth edition. 265-268 - Pierre Laurent-Puig
APC gene: database of germline and somatic mutations in human tumors and cell lines. 269-270 - Cécile Jeanpierre
Software and database for the analysis of mutations in the human WT1 gene. 271-274 - Florence Horn, Jonathan Weare, Margot W. Beukers, S. Hörsch, Amos Bairoch
GPCRDB: an information system for G protein-coupled receptors. 275-279 - Kathleen L. Triman, Alexandra Peister
Expanded versions of the 16S and 23S ribosomal RNA mutation databases (16SMDBexp and 23SMDBexp) [published erratum appears in Nucleic Acids Res 1998 Feb 15;26(4): following 1134]. 280-284 - David N. Cooper
The human gene mutation database. 285-287 - Fidel Salas, Juergen Haas, Brian P. Brunk, Christian J. Stoeckert Jr., G. Christian Overton:
EpoDB: a database of genes expressed during vertebrate erythropoiesis. 288-289 - Franklin Hutchinson, J. Edward Donnellan Jr.:
A mutation spectra database for bacterial and mammalian genes: 1998. 290-291 - Joe S. Mymryk
Database of mutations within the adenovirus 5 E1A oncogene. 292-294 - Clifford G. Robinson, James M. Pipas:
SV40 large tumor antigen (T antigen): database of mutants. 295-296 - Marie-Paule Lefranc
IMGT, the International ImMunoGeneTics database. 297-303 - Terri K. Attwood, Michael E. Beck, Darren R. Flower, Philip Scordis
The PRINTS protein fingerprint database in its fifth year. 304-308 - Steven Henikoff
Superior performance in protein homology detection with the Blocks Database servers. 309-312 - Chris Dodge, Reinhard Schneider, Chris Sander:
The HSSP database of protein structure-sequence alignments and family profiles. 313-315 - Liisa Holm
Touring protein fold space with Dali/FSSP. 316-319 - Erik L. L. Sonnhammer
Pfam: multiple sequence alignments and HMM-profiles of protein domains. 320-322 - Florence Corpet, Jérôme Gouzy, Daniel Kahn:
The ProDom database of protein domain families. 323-326 - Ivan A. Adzhubei
An Integrated Sequence-Structure Database incorporating matching mRNA sequence, amino acid sequence and protein three-dimensional structure data. 327-331 - Christine Hoogland
Current status of the SWISS-2DPAGE database. 332-333 - Yasukazu Nakamura
Codon usage tabulated from the international DNA sequence databases. 334 - Mark E. Dalphin
The translational signal database, TransTerm, is now a relational database. 335-337 - Richard J. Roberts
REBASE - restriction enzymes and methylases. 338-350 - James W. Brown:
The ribonuclease P database. 351-352 - Rouaïda Périer, Thomas Junier, Philipp Bucher:
The Eukaryotic Promoter Database EPD. 353-357 - Kenichi Higo, Yoshihiro Ugawa, Masao Iwamoto, Hiromi Higo:
PLACE: a database of plant cis-acting regulatory DNA elements. 358-359 - David Ghosh:
OOTFD (Object-Oriented Transcription Factors Database): an object- oriented successor to TFD. 360-362 - T. Heinemeyer, Edgar Wingender
Databases on transcriptional regulation: TRANSFAC, TRRD and COMPEL. 362-367 - Vladimir Brusic
MHCPEP, a database of MHC-binding peptides: update 1997. 368-371 - Andreas D. Baxevanis, David Landsman
Histone Sequence Database: new histone fold family members. 372-375 - Kirill Degtyarenko, A. C. North, D. N. Perkins, John B. C. Findlay:
PROMISE: a database of information on prosthetic centres and metal ions in protein active sites. 376-381 - Nikolaj Blom
PhosphoBase: a database of phosphorylation sites. 382-386 - Jan E. Hansen, Ole Lund
O-GLYCBASE Version 3.0: a revised database of O-glycosylated proteins. 387-389
Volume 26, Number 13, July 1998
- Junzhuan Qiu, Min-Xin Guan
Saccharomyces cerevisiae exonuclease-1 plays a role in UV resistance that is distinct from nucleotide excision repair. 3077-3083 - Richard Cartwright, Cathryn E. Tambini, Paul J. Simpson, John Thacker:
The XRCC2 DNA repair gene from human and mouse encodes a novel member of the recA/RAD51 family. 3084-3089 - S. Niranjanakumari, Jeffrey C. Kurz, Carol A. Fierke:
Expression, purification and characterization of the recombinant ribonuclease P protein component from Bacillus subtilis. 3090-3096 - Fiona E. M. Paulin, Stephen A. Chappell, Anne E. Willis
A single nucleotide change in the c-myc internal ribosome entry segment leads to enhanced binding of a group of protein factors. 3097-3103 - Jeffrey I. Gyi, Andrew N. Lane, Graeme L. Conn, Tom Brown:
The orientation and dynamics of the C2'-OH and hydration of RNA and DNA.RNA hybrids. 3104-3110 - Zoe Karetsou, Raphael Sandaltzopoulos, Maria Frangou-Lazaridis, Chun-Yen Lai, Orestes Tsolas, Peter B. Becker
Prothymosin alpha modulates the interaction of histone H1 with chromatin. 3111-3118 - Ralf Trippe, Björn Sandrock, Bernd-Joachim Benecke:
A highly specific terminal uridylyl transferase modifies the 3'-end of U6 small nuclear RNA. 3119-3126 - Mohammad Ahmadian, Peiming Zhang, Donald E. Bergstrom:
A comparative study of the thermal stability of oligodeoxyribonucleotides containing 5-substituted 2'-deoxyuridines. 3127-3135 - Joseph G. Harrison, Shankar Balasubramanian
Synthesis and hybridization analysis of a small library of peptide- oligonucleotide conjugates. 3136-3145 - Abdellatif Errami, Dong Ming He, Anna A. Friedl, Wilhelmina J. I. Overkamp, Bruno Morolli, Eric A. Hendrickson, Friederike Eckardt-Schupp, Mitsuo Oshimura, Paul H. M. Lohman, Stephen P. Jackson
XR-C1, a new CHO cell mutant which is defective in DNA-PKcs, is impaired in both V(D)J coding and signal joint formation. 3146-3153 - Sun-Hee Leem, Chung-Nam Chung, Yangil Sunwoo, Hiroyuki Araki:
Meiotic role of SWI6 in Saccharomyces cerevisiae. 3154-3158 - Yanzheng Xu, Eric T. Kool:
Chemical and enzymatic properties of bridging 5'-S-phosphorothioester linkages in DNA. 3159-3164 - Colin Campbell, Daniel P. Romero:
Identification and characterization of the RAD51 gene from the ciliate Tetrahymena thermophila. 3165-3172 - Steven G. Chaulk, Andrew M. MacMillan
Caged RNA: photo-control of a ribozyme reaction. 3173-3178 - Emanuele Buratti
Functional analysis of the interaction between HCV 5'UTR and putative subunits of eukaryotic translation initiation factor eIF3. 3179-3187 - Etsuko N. Moriyama, Jeffrey R. Powell:
Gene length and codon usage bias in Drosophila melanogaster, Saccharomyces cerevisiae and Escherichia coli. 3188-3193 - Karol Bialkowski
A novel assay of 8-oxo-2'-deoxyguanosine 5'-triphosphate pyrophosphohydrolase (8-oxo-dGTPase) activity in cultured cells and its use for evaluation of cadmium(II) inhibition of this activity. 3194-3201 - Naomi M. Fast, Andrew J. Roger, Claire A. Richardson, W. Ford Doolittle
U2 and U6 snRNA genes in the microsporidian Nosema locustae: evidence for a functional spliceosome. 3202-3207 - Hideaki Kuge
Cap ribose methylation of c-mos mRNA stimulates translation and oocyte maturation in Xenopus laevis. 3208-3214 - Techung Lee, Michael E. Bradley, Jennifer L. Walowitz:
Influence of promoter potency on the transcriptional effects of YY1, SRF and Msx-1 in transient transfection analysis. 3215-3220 - Nickolai A. Tchurikov, Aleksei N. Krasnov, Natalia A. Ponomarenko
Forum domain in Drosophila melanogaster cut locus possesses looped domains inside. 3221-3227 - Zhang Lin
The observation of the local ordering characteristics of spermidine- condensed DNA: atomic force microscopy and polarizing microscopy studies. 3228-3234 - Amy M. Diegelman, Eric T. Kool:
Generation of circular RNAs and trans-cleaving catalytic RNAs by rolling transcription of circular DNA oligonucleotides encoding hairpin ribozymes. 3235-3241 - Normunds Licis, Jan van Duin, Zita Balklava
Long-range translational coupling in single-stranded RNA bacteriophages: an evolutionary analysis. 3242-3246 - Tim G. S. Olsson, Karl Ekwall
Genetic characterisation of hda1+, a putative fission yeast histone deacetylase gene. 3247-3254 - Jean Philippe Reichheld, Claude Gigot, Nicole Chaubet-Gigot:
Multilevel regulation of histone gene expression during the cell cycle in tobacco cells. 3255-3262 - Pierre-Olivier Angrand
Inducible expression based on regulated recombination: a single vector strategy for stable expression in cultured cells. 3263-3269 - Shi-Fa Ding, Jeffrey Noronha, Sadhna Joshi:
Co-packaging of sense and antisense RNAs: a novel strategy for blocking HIV-1 replication. 3270-3278 - Nathalie Spruyt, Christiane Delarbre, Gabriel Gachelin, Vincent Laudet:
Complete sequence of the amphioxus (Branchiostoma lanceolatum) mitochondrial genome: relations to vertebrates. 3279-3285 - Eiko Tsuchiya, Tomoki Hosotani, Tokichi Miyakawa:
A mutation in NPS1/STH1, an essential gene encoding a component of a novel chromatin-remodeling complex RSC, alters the chromatin structure of Saccharomyces cerevisiae centromeres. 3286-3292 - Nikolai A. Timchenko, Margaret Wilde, Ken-Ichiro Kosai, Ahmed Heydari, Timothy A. Bilyeu, Milton J. Finegold, Khalid Mohamedali
Regenerating livers of old rats contain high levels of C/EBPalpha that correlate with altered expression of cell cycle associated proteins. 3293-3299 - Jianquan Liu, John-Stephen Taylor
Template-directed photoligation of oligodeoxyribonucleotides via 4- thiothymidine. 3300-3304 - Carol Bindon, Jane Martindale, Christopher Mitchell:
Biologically-generated primer for PCR: PCR primer of unknown sequence. 3305-3308 - David Moreira:
Efficient removal of PCR inhibitors using agarose-embedded DNA preparations. 3309-3310 - Gisela Schnapp
One-step affinity purification protocol for human telomerase. 3311-3313 - João Albuquerque-Silva, Sophie Houard, Alex Bollen:
Tailing cDNAs with terminal deoxynucleotidyl transferase in RT-PCR assays to identify ribozyme cleavage products. 3314-3316 - Christian Barth, D. J. Fraser, Paul R. Fisher
A rapid, small scale method for characterization of plasmid insertions in the Dictyostelium genome. 3317-3318
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