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Ole Lund
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2020 – today
- 2021
- [j35]Rosa L. Allesøe, Camilla K. Lemvigh, My V. T. Phan
, Philip T. L. C. Clausen, Alfred F. Florensa, Marion Koopmans, Ole Lund
Automated download and clean-up of family-specific databases for kmer-based virus identification. Bioinform. 37(5): 705-710 (2021)
2010 – 2019
- 2019
- [j34]Clara Amid
The COMPARE Data Hubs. Database J. Biol. Databases Curation 2019: baz136 (2019) - 2018
- [j33]Maria Luisa Matey-Hernandez
Benchmarking the HLA typing performance of Polysolver and Optitype in 50 Danish parental trios. BMC Bioinform. 19(1): 239:1-239:12 (2018) - [j32]Philip T. L. C. Clausen
Rapid and precise alignment of raw reads against redundant databases with KMA. BMC Bioinform. 19(1): 307:1-307:8 (2018) - 2017
- [j31]Martin Christen Frølund Thomsen
RUCS: rapid identification of PCR primers for unique core sequences. Bioinform. 33(24): 3917-3921 (2017) - [j30]Lasse Maretty
Sequencing and de novo assembly of 150 genomes from Denmark as a population reference. Nat. 548(7665): 87-91 (2017) - 2016
- [j29]Jens Kringelum, Sonny Kim Kjærulff, Søren Brunak
ChemProt-3.0: a global chemical biology diseases mapping. Database J. Biol. Databases Curation 2016 (2016) - 2015
- [j28]Thomas Trolle
Automated benchmarking of peptide-MHC class I binding predictions. Bioinform. 31(13): 2174-2181 (2015) - [j27]Dhany Saputra, Simon Rasmussen
Reads2Type: a web application for rapid microbial taxonomy identification. BMC Bioinform. 16: 398:1-398:10 (2015) - 2013
- [j26]Massimo Andreatta
Simultaneous alignment and clustering of peptide data using a Gibbs sampling approach. Bioinform. 29(1): 8-14 (2013) - [j25]Sonny Kim Kjærulff, Louis Wich, Jens Kringelum, Ulrik Plesner Jacobsen, Irene Kouskoumvekaki
ChemProt-2.0: visual navigation in a disease chemical biology database. Nucleic Acids Res. 41(Database-Issue): 464-469 (2013) - [j24]Leon Eyrich Jessen
SigniSite: Identification of residue-level genotype-phenotype correlations in protein multiple sequence alignments. Nucleic Acids Res. 41(Webserver-Issue): 286-291 (2013) - 2012
- [j23]Yohan Kim, Julia V. Ponomarenko
Immune epitope database analysis resource. Nucleic Acids Res. 40(Web-Server-Issue): 525-530 (2012) - [j22]Jens Vindahl Kringelum, Claus Lundegaard, Ole Lund
Reliable B Cell Epitope Predictions: Impacts of Method Development and Improved Benchmarking. PLoS Comput. Biol. 8(12) (2012) - 2011
- [j21]Nicolas Rapin
Immune system simulation online. Bioinform. 27(14): 2013-2014 (2011) - 2010
- [j20]Peng Wang
Peptide binding predictions for HLA DR, DP and DQ molecules. BMC Bioinform. 11: 568 (2010) - [j19]Morten Nielsen
CPHmodels-3.0 - remote homology modeling using structure-guided sequence profiles. Nucleic Acids Res. 38(Web-Server-Issue): 576-581 (2010) - [c6]Claus Lundegaard, M. Buggert, A. C. Karlsson, Ole Lund, Carina Perez, Morten Nielsen:
PopCover: a method for selecting of peptides with optimal population and pathogen coverage. BCB 2010: 658-659
2000 – 2009
- 2009
- [j18]Hao Zhang, Ole Lund
The PickPocket method for predicting binding specificities for receptors based on receptor pocket similarities: application to MHC-peptide binding. Bioinform. 25(10): 1293-1299 (2009) - [j17]Morten Nielsen
NN-align. An artificial neural network-based alignment algorithm for MHC class II peptide binding prediction. BMC Bioinform. 10: 296 (2009) - 2008
- [j16]Claus Lundegaard, Ole Lund
Accurate approximation method for prediction of class I MHC affinities for peptides of length 8, 10 and 11 using prediction tools trained on 9mers. Bioinform. 24(11): 1397-1398 (2008) - [j15]Claus Lundegaard, Kasper Lamberth, Mikkel Harndahl, Søren Buus
NetMHC-3.0: accurate web accessible predictions of human, mouse and monkey MHC class I affinities for peptides of length 8-11. Nucleic Acids Res. 36(Web-Server-Issue): 509-512 (2008) - [j14]Qing Zhang, Peng Wang, Yohan Kim, Pernille Haste-Andersen, John E. Beaver, Philip E. Bourne, Huynh-Hoa Bui, Søren Buus
Immune epitope database analysis resource (IEDB-AR). Nucleic Acids Res. 36(Web-Server-Issue): 513-518 (2008) - [j13]Morten Nielsen
Quantitative Predictions of Peptide Binding to Any HLA-DR Molecule of Known Sequence: NetMHCIIpan. PLoS Comput. Biol. 4(7) (2008) - 2007
- [j12]Claus Lundegaard, Ole Lund
Modeling the adaptive immune system: predictions and simulations. Bioinform. 23(24): 3265-3275 (2007) - [j11]Mette V. Larsen, Claus Lundegaard, Kasper Lamberth, Søren Buus
Large-scale validation of methods for cytotoxic T-lymphocyte epitope prediction. BMC Bioinform. 8 (2007) - [j10]Morten Nielsen
Prediction of MHC class II binding affinity using SMM-align, a novel stabilization matrix alignment method. BMC Bioinform. 8 (2007) - 2006
- [j9]Bjoern Peters, Huynh-Hoa Bui, Sune Frankild
A Community Resource Benchmarking Predictions of Peptide Binding to MHC-I Molecules. PLoS Comput. Biol. 2(6) (2006) - [c5]Alessandro Sette, Huynh-Hoa Bui, John Sidney, Philip E. Bourne, Søren Buus, Ward Fleri, R. Kubo, Ole Lund
The Immune Epitope Database and Analysis Resource. PRIB 2006: 126-132 - 2005
- [b1]Ole Lund, Morten Nielsen, Claus Lundegaard, Can Kesmir, Søren Brunak:
Immunological bioinformatics. Computational molecular biology, AAAI Press 2005, ISBN 978-0-262-12280-1, pp. I-XII, 1-296 - 2004
- [j8]Morten Nielsen
Improved prediction of MHC class I and class II epitopes using a novel Gibbs sampling approach. Bioinform. 20(9): 1388-1397 (2004) - [j7]Lars Kiemer, Ole Lund
Coronavirus 3CLpro proteinase cleavage sites: Possible relevance to SARS virus pathology. BMC Bioinform. 5: 72 (2004) - [c4]Claus Lundegaard, Morten Nielsen, Kasper Lamberth, Peder Worning, Christina Sylvester-Hvid, Søren Buus, Søren Brunak, Ole Lund
MHC Class I Epitope Binding Prediction Trained on Small Data Sets. ICARIS 2004: 217-225 - 2003
- [j6]Jens Kaae Christensen, Kasper Lamberth, Morten Nielsen
Selecting Informative Data for Developing Peptide-MHC Binding Predictors Using a Query by Committee Approach. Neural Comput. 15(12): 2931-2942 (2003) - [c3]Claus Lundegaard, Thomas Nordahl Petersen, Morten Nielsen, Henrik Bohr, Jakob Bohr, Søren Brunak, Garry Gippert, Ole Lund:
Prediction of Protein Secondary Structure at High Accuracy Using a Combination of Many Neural Networks. Mathematical Methods for Protein Structure Analysis and Design 2003: 117-122
1990 – 1999
- 1999
- [j5]Jan Gorodkin
MatrixPlot: visualizing sequence constraints. Bioinform. 15(9): 769-770 (1999) - [c2]Jan Gorodkin, Ole Lund, Claus A. F. Andersen, Søren Brunak:
Using Sequence Motifs for Enhanced Neural Network Prediction of Protein Distance Constraints. ISMB 1999: 95-105 - 1998
- [j4]Jan E. Hansen, Ole Lund
O-GLYCBASE Version 3.0: a revised database of O-glycosylated proteins. Nucleic Acids Res. 26(1): 387-389 (1998) - 1997
- [j3]Jan E. Hansen, Ole Lund
O-GLYCBASE version 2.0: a revised database of O-glycosylated proteins. Nucleic Acids Res. 25(1): 278-282 (1997) - 1996
- [j2]Jan E. Hansen, Ole Lund
O-GLYCBASE: a revised database of O-glycosylated proteins. Nucleic Acids Res. 24(1): 248-252 (1996) - 1993
- [j1]Ole Lund, Erik Mosekilde, Jan E. Hansen:
Period doubling route to chaos in a model of HIV infection of the immune system: A comment on the Anderson-May model. Simul. Pract. Theory 1(2): 49-55 (1993) - 1992
- [c1]Ole Lund, Erik Mosekilde, Jan E. Hansen:
Period Doubling Route to Chaos in a Model of HIV infection of the Immune System. EUROSIM 1992: 601-606
Coauthor Index
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