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Starred repositories
解决Cursor在免费订阅期间出现以下提示的问题: You've reached your trial request limit. / Too many free trial accounts used on this machine. Please upgrade to pro. We have this limit in place to prevent abuse. Please l…
Haplotype-specific somatic copy number aberrations/profiling from long reads sequencing data
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A computational method for inferring the cancer cell fraction of tumour structural variation from whole-genome sequencing data.
A Python library for manipulation of CIGAR, MSA, and other alignment formats.
Parsimonious solutions to complex rearrangements for fun
很多镜像都在国外。比如 gcr 。国内下载很慢，需要加速。致力于提供连接全世界的稳定可靠安全的容器镜像服务。
Bioinformatics Pipeline and Visualization resources
IMSindel: An accurate intermediate-size indel detection tool incorporating de novo assembly and gapped global-local alignment with split read analysis
Materials & Methods for CNV calling with Genalice software against a benchmark dataset
R script for multiple BAM alignments viewing using Gviz (bioconductor package)
A number of functions were generated to perform pan-cancer DEG analysis, correlation analysis between gene expression and TMB, MSI, TIME, and promoter methylation. Methods for visualization were pr…
coding exercise using TCGA immune infiltration data
Tools to gather evidence for structural variation via breakpoint detection.
SV detection tool for nanopore sequence reads
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Merging, Annotation, Validation, and Illustration of Structural variants
Annotate genomics variations of hg19 by using a BED format database, which construct from NCBI annotation release 104
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