mirdeep2

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RNA-seq, smRNA-seq, scRNA-seq & ATAC-seq workflows for @cornell-TREX

ggplot2 shiny rnaseq multiqc star bash-script shiny-apps bash-scripting 10xgenomics singlecell smallrna mirdeep2 scrna smallrna-seq seurat

This is a pipeline for microRNA extraction from raw sequences

shell mapping slurm human trimming bash-script raw-data mirdeep2 quantifying mirnas microarns

An awesome microRNA-sequencing pipeline

snakemake singularity mirna mirdeep2 mirna-seq micro-rna micro-rna-expression mature-mirna

Discovering known and novel miRNAs from small RNA sequencing data - updated scripts before release

data analysis mapping sequencing prediction small rna patch quantification mirna smallrna mirdeep microrna mirdeep2

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