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maldi-msi

Here are 12 public repositories matching this topic...

friendethan / Gangliosides_IMS

Codes for analyzing the relative ganglioside intensities MS results of brain sections. Calculates total ion current using MALDIquant.

maldi-tof-ms maldi-msi

Updated Dec 30, 2020
R

friendethan / Strawberry_IMS

Data analysis pipeline for strawberry imaging mass spectrometry data in Food Chemistry publication. Uses Cardinal, MALDIquant and Tidyverse

maldi-tof-ms maldi-msi maldi-ims

Updated Dec 30, 2020
R

friendethan / FlyTubules_IMS

Script for unsupervised analysis of microdissected fly tubule phospholipid signals as well as fly sections. Uses Cardinal

cardinal maldi-tof-ms maldi-msi maldi-ims

Updated Dec 30, 2020
R

piplus2 / tut_maldiquant_msi

Tutorial preprocessing MSI using MALDIquant

mass-spectrometry imaging desi-msi maldi-msi

Updated Oct 19, 2021
HTML

thealchemist26 / MSIView-MassSpecImaging-Software

This JupyterNotebook-based code implements a Mass Spectrometry Imaging (MSI) visualiser tool that allows researchers to explore molecular distributions across various samples for MALDI and DESI images using imzml file.

mass-spectrometry imaging desi maldi-msi maldi-tof

Updated Feb 24, 2025
Jupyter Notebook

YonghuiDong / ShinyCardinal

Shiny App for Mass Spectrometry Imaging

sims r shiny msi desi-msi mass-spectrometry-imaging maldi-msi maldi-ims

Updated Jul 21, 2024
HTML

friendethan / SilverSpray_IMS

Script for analyzing intensity of olefin species from AgLDI IMS data. Uses MALDIquant, Cardinal and Tidyverse

cardinal maldi-tof-ms maldi-msi maldi-ims

Updated Dec 30, 2020
R

piplus2 / DESI_MSI_recal

Companion code for the publication: Inglese, P., Huang, H., Wu, V., Lewis, M.R. and Takats, Z., 2021. Mass recalibration for desorption electrospray ionization mass spectrometry imaging using endogenous reference ions. biorXiv

imaging-informatics mass-spectrometry desi-msi maldi-msi calibration-process

Updated Oct 17, 2022
Python

CeMOS-Mannheim / PlaquePicker

mass-spectrometry roi msi maldi-msi alzheimer-disease amyloid-plaque

Updated Sep 20, 2022
R

gmrukwa / msi-preprocessing-pipeline

Default preprocessing pipeline for MSI data in raw ASCII format based on Gaussian Mixture Modeling (GMM)

feature-extraction preprocessing normalization mass-spectrometry-imaging maldi-msi

Updated Aug 14, 2023
Python

novak-jiri / cyclobranch

A tool for mass spectrometry data analysis.

bioinformatics metabolomics mass-spectrometry lc-ms ms-data imaging peptide-identification peptides mzml image-fusion desi-msi imzml de-novo dereplication mass-spectrometry-imaging bioinformatics-tool maldi-msi

Updated Aug 21, 2023
C++

piplus2 / SPUTNIK

SPUTNIK R package

bioinformatics image-processing mass-spectrometry maldi-tof-ms desi-msi mass-spectrometry-imaging maldi-msi

Updated Apr 14, 2024
R

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