Mechanical unfolding of RNA hairpins (Q33784317)

29 July 2017

title

Mechanical unfolding of RNA hairpins (English)

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29 July 2017

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29 July 2017

D Thirumalai

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29 July 2017

language of work or name

English

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publication date

4 March 2005

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Proceedings of the National Academy of Sciences of the United States of America

29 July 2017

published in

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29 July 2017

volume

102

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29 July 2017

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29 July 2017

page(s)

6789-6794

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RNA folding and unfolding

29 July 2017

cites work

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1100749

Slow nucleic acid unzipping kinetics from sequence-defined barriers

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1100749

Mechanically probing the folding pathway of single RNA molecules

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1100749

DNA unzipped under a constant force exhibits multiple metastable intermediates

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1100749

Exploring the folding landscape of a structured RNA

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1100749

A thermodynamic framework for Mg2+ binding to RNA.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1100749

Force-induced denaturation of RNA

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1100749

Beyond kinetic traps in RNA folding

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1100749

Early events in RNA folding

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1100749

Native topology determines force-induced unfolding pathways in globular proteins

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1100749

Solution structure of Cobalt(III)hexammine complexed to the GAAA tetraloop, and metal-ion binding to G.A mismatches

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1100749

Stretching single-domain proteins: phase diagram and kinetics of force-induced unfolding

4 July 2018

1 reference

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Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure

4 July 2018

1 reference

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Virtual atom representation of hydrogen bonds in minimal off-lattice models of alpha helices: effect on stability, cooperativity and kinetics

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1100749

Kinetics and thermodynamics of folding in model proteins

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1100749

Coaxial stacking of helixes enhances binding of oligoribonucleotides and improves predictions of RNA folding

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1100749

Folding of the Tetrahymena ribozyme by polyamines: importance of counterion valence and size

4 July 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0408314102

Reversible unfolding of single RNA molecules by mechanical force

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0408314102

Equilibrium information from nonequilibrium measurements in an experimental test of Jarzynski's equality

21 January 2018

1 reference

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THE weighted histogram analysis method for free-energy calculations on biomolecules. I. The method

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0408314102

Force-clamp spectroscopy monitors the folding trajectory of a single protein

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0408314102

The secondary structure of RNA under tension

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/15749822

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Cooperativity in protein folding: from lattice models with sidechains to real proteins

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/15749822

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.0408314102

1 reference

29 July 2017

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29 July 2017

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