Reaction coordinates and rates from transition paths (Q33784292)

29 July 2017

title

Reaction coordinates and rates from transition paths (English)

1 reference

29 July 2017

Robert B Best

0 references

Gerhard Hummer

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language of work or name

English

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publication date

6 April 2005

1 reference

Proceedings of the National Academy of Sciences of the United States of America

29 July 2017

published in

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29 July 2017

volume

102

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29 July 2017

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29 July 2017

page(s)

6732-6737

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Two-state folding observed in individual protein molecules

29 July 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1100744

The origins of asymmetry in the folding transition states of protein L and protein G.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1100744

Transition path sampling: throwing ropes over rough mountain passes, in the dark.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1100744

Water conduction through the hydrophobic channel of a carbon nanotube

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1100744

Helix nucleation kinetics from molecular simulations in explicit solvent

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1100744

Reaction coordinates of biomolecular isomerization

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1100744

Free energy profiles for H+ conduction along hydrogen-bonded chains of water molecules

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1100744

Folding funnels and frustration in off-lattice minimalist protein landscapes

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1100744

Solution structure of the albumin-binding GA module: a versatile bacterial protein domain

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1100744

Reaction-rate theory: fifty years after Kramers

4 July 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0408098102

On the transition coordinate for protein folding

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0408098102

From transition paths to transition states and rate coefficients

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0408098102

One-dimensional reaction coordinates for diffusive activated rate processes in many dimensions

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0408098102

How do small single-domain proteins fold?

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0408098102

Electric field and temperature effects on water in the narrow nonpolar pores of carbon nanotubes

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0408098102

Proton Transport through Water-Filled Carbon Nanotubes

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0408098102

Comparison of simple potential functions for simulating liquid water

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0408098102

One-dimensional reaction coordinate and the corresponding potential of mean force from commitment probability distribution

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1100744

Automatic method for identifying reaction coordinates in complex systems

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1100744

Water-gated mechanism of proton translocation by cytochrome c oxidase

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1100744

Coarse molecular dynamics of a peptide fragment: Free energy, kinetics, and long-time dynamics computations

30 October 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0408098102

Filling and emptying kinetics of carbon nanotubes in water

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0408098102

Sterically stabilized liposomes of DPPC/DPPE-PEG:2000. A spin label ESR and spectrophotometric study

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0408098102

Large-amplitude nonlinear motions in proteins

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/15814618

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.0408098102

1 reference

release_76phpbeyvzgipljv4iyo6kkzhu

29 July 2017

0 references

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/76phpbeyvzgipljv4iyo6kkzhu

mapped directly with Wikidata item

24 November 2022

based on heuristic

PMC publication ID

1100744

1 reference

29 July 2017

1 reference