Evolutionary analysis of the dynamics of viral infectious disease (Q37535485)

20 August 2017

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title

Evolutionary analysis of the dynamics of viral infectious disease (English)

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20 August 2017

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Andrew Rambaut

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20 August 2017

Oliver G Pybus

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1 August 2009

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20 August 2017

published in

Nature Reviews Genetics

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20 August 2017

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20 August 2017

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20 August 2017

page(s)

540-550

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Phylogenetic analysis reveals the global migration of seasonal influenza A viruses

20 August 2017

cites work

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Relaxed phylogenetics and dating with confidence

21 January 2018

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Episodic sexual transmission of HIV revealed by molecular phylodynamics

21 January 2018

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Synonymous substitution rates predict HIV disease progression as a result of underlying replication dynamics

21 January 2018

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Rates of evolutionary change in viruses: patterns and determinants

21 January 2018

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Unifying the epidemiological and evolutionary dynamics of pathogens

31 March 2020

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Revealing the history of infectious disease epidemics through phylogenetic trees

31 March 2020

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Different population dynamics of human T cell lymphotropic virus type II in intravenous drug users compared with endemically infected tribes

31 March 2020

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The genomic and epidemiological dynamics of human influenza A virus

31 March 2020

1 reference

The global circulation of seasonal influenza A (H3N2) viruses

31 March 2020

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Complete Genome Analysis of 33 Ecologically and Biologically Diverse Rift Valley Fever Virus Strains Reveals Widespread Virus Movement and Low Genetic Diversity due to Recent Common Ancestry

31 March 2020

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The emergence of HIV/AIDS in the Americas and beyond

31 March 2020

1 reference

Chimpanzee reservoirs of pandemic and nonpandemic HIV-1

31 March 2020

1 reference

Timing the ancestor of the HIV-1 pandemic strains

31 March 2020

1 reference

The molecular population genetics of HIV-1 group O

31 March 2020

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Tracing the origin and history of the HIV-2 epidemic

31 March 2020

1 reference

Human immunodeficiency virus. Phylogeny and the origin of HIV-1.

31 March 2020

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Unprecedented degree of human immunodeficiency virus type 1 (HIV-1) group M genetic diversity in the Democratic Republic of Congo suggests that the HIV-1 pandemic originated in Central Africa.

31 March 2020

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Direct evidence of extensive diversity of HIV-1 in Kinshasa by 1960

31 March 2020

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An African HIV-1 sequence from 1959 and implications for the origin of the epidemic

31 March 2020

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Predicting the evolution of human influenza A.

31 March 2020

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Long term trends in the evolution of H(3) HA1 human influenza type A

31 March 2020

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Positive Darwinian evolution in human influenza A viruses

31 March 2020

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Whole-genome analysis of human influenza A virus reveals multiple persistent lineages and reassortment among recent H3N2 viruses

31 March 2020

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Molecular epidemiology of A/H3N2 and A/H1N1 influenza virus during a single epidemic season in the United States

31 March 2020

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Multiple reassortment events in the evolutionary history of H1N1 influenza A virus since 1918

31 March 2020

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Mapping the antigenic and genetic evolution of influenza virus

31 March 2020

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Estimating the date of origin of an HIV-1 circulating recombinant form.

31 March 2020

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Adaptation of HIV-1 to its human host.

31 March 2020

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Adaptation of HIV-1 to human leukocyte antigen class I

31 March 2020

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Adaptation to different human populations by HIV-1 revealed by codon-based analyses

31 March 2020

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The epidemic behavior of the hepatitis C virus

31 March 2020

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Genetic history of hepatitis C virus in East Asia

31 March 2020

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Phylogeography of circulating populations of human echovirus 30 over 50 years: Nucleotide polymorphism and signature of purifying selection in the VP1 capsid protein gene

31 March 2020

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Transmission networks and population turnover of echovirus 30

31 March 2020

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Evolutionary dynamics of human and avian metapneumoviruses

31 March 2020

1 reference

A statistical phylogeography of influenza A H5N1.

31 March 2020

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Evolutionary and transmission dynamics of reassortant H5N1 influenza virus in Indonesia.

31 March 2020

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Evolutionary dynamics and emergence of panzootic H5N1 influenza viruses.

31 March 2020

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Coronavirus as a possible cause of severe acute respiratory syndrome

31 March 2020

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Isolation and characterization of viruses related to the SARS coronavirus from animals in southern China

31 March 2020

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Bats are natural reservoirs of SARS-like coronaviruses

31 March 2020

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Evidence of the recombinant origin of a bat severe acute respiratory syndrome (SARS)-like coronavirus and its implications on the direct ancestor of SARS coronavirus

31 March 2020

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Origin of the West Nile virus responsible for an outbreak of encephalitis in the northeastern United States

31 March 2020

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Recent epidemic of acute hepatitis C virus in HIV-positive men who have sex with men linked to high-risk sexual behaviours

31 March 2020

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Genetic analysis reveals the complex structure of HIV-1 transmission within defined risk groups

31 March 2020

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Genomic Epidemiology of a Dengue Virus Epidemic in Urban Singapore

31 March 2020

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A high-resolution genetic signature of demographic and spatial expansion in epizootic rabies virus

31 March 2020

1 reference

Invasion and Maintenance of Dengue Virus Type 2 and Type 4 in the Americas

31 March 2020

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Wave-like spread of Ebola Zaire

31 March 2020

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Epidemiology, genetic diversity, and evolution of endemic feline immunodeficiency virus in a population of wild cougars

31 March 2020

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Pandemic potential of a strain of influenza A (H1N1): early findings

31 March 2020

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A comparison of the molecular clock of hepatitis C virus in the United States and Japan predicts that hepatocellular carcinoma incidence in the United States will increase over the next two decades

31 March 2020

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The epidemiology and iatrogenic transmission of hepatitis C virus in Egypt: a Bayesian coalescent approach

31 March 2020

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The epidemic origin and molecular properties of B': a founder strain of the HIV-1 transmission in Asia

31 March 2020

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Increasing Prevalence of HIV‐1 Subtype A in Greece: Estimating Epidemic History and Origin

31 March 2020

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Diversification of rice yellow mottle virus and related viruses spans the history of agriculture from the neolithic to the present

31 March 2020

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Spread of an introduced vector-borne banana virus in Hawaii.

31 March 2020

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The molecular clock of HIV-1 unveiled through analysis of a known transmission history

31 March 2020

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Population genetic estimation of the loss of genetic diversity during horizontal transmission of HIV-1.

31 March 2020

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Clinical outcomes after hepatitis C infection from contaminated anti-D immune globulin. Irish Hepatology Research Group

31 March 2020

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Analysis of the overdispersed clock in the short-term evolution of hepatitis C virus: Using the E1/E2 gene sequences to infer infection dates in a single source outbreak

31 March 2020

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Molecular footprint of drug-selective pressure in a human immunodeficiency virus transmission chain

31 March 2020

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Accurate reconstruction of a known HIV-1 transmission history by phylogenetic tree analysis

31 March 2020

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Phylogenetic reconstruction of a known HIV-1 CRF04_cpx transmission network using maximum likelihood and Bayesian methods

31 March 2020

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Germs, genomes and genealogies

31 March 2020

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31 March 2020

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Integrating genetic and epidemiological data to determine transmission pathways of foot-and-mouth disease virus.

31 March 2020

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Molecular epidemiology: HIV-1 and HCV sequences from Libyan outbreak

31 March 2020

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Molecular epidemiology of the novel coronavirus that causes severe acute respiratory syndrome.

31 March 2020

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Infection with chikungunya virus in Italy: an outbreak in a temperate region

31 March 2020

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Viral Quasi-Species Evolution During Hepatitis Be Antigen Seroconversion

31 March 2020

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Adaptive evolution of human immunodeficiency virus-type 1 during the natural course of infection

31 March 2020

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Adaptation in the env gene of HIV-1 and evolutionary theories of disease progression

31 March 2020

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Characterization of human immunodeficiency virus type 1 (HIV-1) envelope variation and neutralizing antibody responses during transmission of HIV-1 subtype B.

31 March 2020

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The outcome of acute hepatitis C predicted by the evolution of the viral quasispecies

31 March 2020

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High-resolution phylogenetic analysis of hepatitis C virus adaptation and its relationship to disease progression

31 March 2020

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Evolution of hepatitis C viral quasispecies and hepatic injury in perinatally infected children followed prospectively

31 March 2020

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HIV evolution: CTL escape mutation and reversion after transmission

31 March 2020

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Evidence of HIV-1 adaptation to HLA-restricted immune responses at a population level

31 March 2020

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Founder Effects in the Assessment of HIV Polymorphisms and HLA Allele Associations

31 March 2020

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Inefficient cytotoxic T lymphocyte-mediated killing of HIV-1-infected cells in vivo

31 March 2020

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Phylodynamic analysis of human immunodeficiency virus type 1 in distinct brain compartments provides a model for the neuropathogenesis of AIDS.

31 March 2020

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Preferential detection of HIV subtype C' over subtype A in cervical cells from a dually infected woman

31 March 2020

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Semen-specific genetic characteristics of human immunodeficiency virus type 1 env.

31 March 2020

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Distinct hepatitis C virus core and F protein quasispecies in tumoral and nontumoral hepatocytes isolated via microdissection.

31 March 2020

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Linking within- and between-host dynamics in the evolutionary epidemiology of infectious diseases

31 March 2020

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Prevalence of drug-resistant HIV-1 variants in untreated individuals in Europe: implications for clinical management

31 March 2020

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Evolutionary indicators of human immunodeficiency virus type 1 reservoirs and compartments

31 March 2020

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Linking dynamical and population genetic models of persistent viral infection

31 March 2020

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Variation in HIV-1 set-point viral load: epidemiological analysis and an evolutionary hypothesis

31 March 2020

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Coalescent estimates of HIV-1 generation time in vivo

31 March 2020

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A robust measure of HIV-1 population turnover within chronically infected individuals.

31 March 2020

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Traces of human migrations in Helicobacter pylori populations

31 March 2020

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Novel mammalian herpesviruses and lineages within the Gammaherpesvirinae: cospeciation and interspecies transfer

31 March 2020

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Early origin and recent expansion of Plasmodium falciparum

31 March 2020

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Genome sequencing in microfabricated high-density picolitre reactors

31 March 2020

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Many-core algorithms for statistical phylogenetics

31 March 2020

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SplitsTree: analyzing and visualizing evolutionary data

31 March 2020

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31 March 2020

Causes of HIV diversity

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The population genetics of dN/dS

31 March 2020

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Correlating viral phenotypes with phylogeny: accounting for phylogenetic uncertainty

31 March 2020

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Latent infection of CD4+ T cells provides a mechanism for lifelong persistence of HIV-1, even in patients on effective combination therapy

31 March 2020

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Dynamic correlation between intrahost HIV-1 quasispecies evolution and disease progression

31 March 2020

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Unequal evolutionary rates in the human immunodeficiency virus type 1 (HIV-1) pandemic: the evolutionary rate of HIV-1 slows down when the epidemic rate increases

31 March 2020

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HIV evolutionary dynamics within and among hosts

31 March 2020

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12 December 2020

In vivo compartmentalization of human immunodeficiency virus: evidence from the examination of pol sequences from autopsy tissues

1 reference

12 December 2020

Genetic differences between blood- and brain-derived viral sequences from human immunodeficiency virus type 1-infected patients: evidence of conserved elements in the V3 region of the envelope protein of brain-derived sequences

1 reference

12 December 2020

Consistent viral evolutionary changes associated with the progression of human immunodeficiency virus type 1 infection

1 reference

12 December 2020

Long-term evolution of the hypervariable region of hepatitis C virus in a common-source-infected cohort.

1 reference

12 December 2020

Identifiers

DOI

10.1038/NRG2583

1 reference

release_mt2l4oos4ndiniel5rwzovnsa4

20 August 2017

Fatcat ID

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Fatcat

https://api.fatcat.wiki/v0/release/mt2l4oos4ndiniel5rwzovnsa4

24 November 2022

mapped directly with Wikidata item

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