Statistical methods for detecting molecular adaptation (Q28140163)

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scientific article (publication date: December 2000)

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English	Statistical methods for detecting molecular adaptation	scientific article (publication date: December 2000)

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instance of

scholarly article

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review article

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stated in

Europe PubMed Central

title

Statistical methods for detecting molecular adaptation (English)

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main subject

statistics

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author name string

Yang Z

series ordinal

1

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Bielawski JP

series ordinal

2

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language of work or name

English

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publication date

1 December 2000

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number of pages

8

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based on heuristic

inferred from page(s)

published in

Trends in Ecology & Evolution

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volume

15

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issue

12

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page(s)

496-503

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cites work

Synonymous and nonsynonymous rate variation in nuclear genes of mammals.

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/11114436

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12 December 2020

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inferred from PubMed ID database lookup

Molecular evolution of mRNA: a method for estimating evolutionary rates of synonymous and amino acid substitutions from homologous nucleotide sequences and its application

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/11114436

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Estimating synonymous and nonsynonymous substitution rates

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/11114436

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Models of amino acid substitution and applications to mitochondrial protein evolution.

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/11114436

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12 December 2020

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inferred from PubMed ID database lookup

Pattern of nucleotide substitution at major histocompatibility complex class I loci reveals overdominant selection

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/11114436

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12 December 2020

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Recreating ancestral proteins

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/11114436

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12 December 2020

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Natural Selection and the Origin of jingwei , a Chimeric Processed Functional Gene in Drosophila

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/11114436

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12 December 2020

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Coordinated amino acid changes in the evolution of mammalian defensins

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/11114436

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Positive Darwinian selection after gene duplication in primate ribonuclease genes

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/11114436

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12 December 2020

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inferred from PubMed ID database lookup

A codon-based model of nucleotide substitution for protein-coding DNA sequences

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/11114436

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12 December 2020

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Reevaluation of amino acid variability of the human immunodeficiency virus type 1 gp120 envelope glycoprotein and prediction of new discontinuous epitopes

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/11114436

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12 December 2020

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Rapid Evolution of a Homeodomain: Evidence for Positive Selection

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/11114436

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12 December 2020

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Likelihood Models for Detecting Positively Selected Amino Acid Sites and Applications to the HIV-1 Envelope Gene

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/11114436

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12 December 2020

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Inferring weak selection from patterns of polymorphism and divergence at "silent" sites in Drosophila DNA.

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/11114436

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12 December 2020

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Accelerated evolution in the protein-coding regions is universal in crotalinae snake venom gland phospholipase A2 isozyme genes

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/11114436

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12 December 2020

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Reduced nucleotide variability at an androgen-binding protein locus (Abpa) in house mice: evidence for positive natural selection

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/11114436

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12 December 2020

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Evolution of the Zfx and Zfy genes: rates and interdependence between the genes

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/11114436

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12 December 2020

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inferred from PubMed ID database lookup

Adaptive protein evolution at the Adh locus in Drosophila

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/11114436

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12 December 2020

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inferred from PubMed ID database lookup

Genealogical evidence for positive selection in the nef gene of HIV-1

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/11114436

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12 December 2020

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Natural selection promotes divergence of transferrin among salmonid species

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/11114436

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12 December 2020

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Rapid evolution in plant chitinases: molecular targets of selection in plant-pathogen coevolution.

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/11114436

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12 December 2020

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The molecular evolution of vertebrate growth hormones: a pattern of near-stasis interrupted by sustained bursts of rapid change

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/11114436

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12 December 2020

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Evolution of hemopoietic ligands and their receptors. Influence of positive selection on correlated replacements throughout ligand and receptor proteins

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/11114436

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12 December 2020

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inferred from PubMed ID database lookup

Estimating synonymous and nonsynonymous substitution rates under realistic evolutionary models

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/11114436

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Sequence evolution of the porB gene of Neisseria gonorrhoeae and Neisseria meningitidis: evidence of positive Darwinian selection

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/11114436

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12 December 2020

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inferred from PubMed ID database lookup

Rates of conservative and radical nonsynonymous nucleotide substitutions in mammalian nuclear genes

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/11114436

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Preponderance of slightly deleterious polymorphism in mitochondrial DNA: nonsynonymous/synonymous rate ratio is much higher within species than between species

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/11114436

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Natural selection on Plasmodium surface proteins

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/11114436

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A new method for estimating synonymous and nonsynonymous rates of nucleotide substitution considering the relative likelihood of nucleotide and codon changes

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/11114436

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identification of regions in which positive selection may operate in S-RNase of Rosaceae: implication for S-allele-specific recognition sites in S-RNase

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/11114436

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12 December 2020

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Positive selection and the molecular evolution of a gene of male reproduction, Acp26Aa of Drosophila

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/11114436

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A method for detecting positive selection at single amino acid sites

1 reference

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/11114436

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Statistical tests of neutrality in the age of weak selection

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/11114436

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12 December 2020

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Unbiased estimation of the rates of synonymous and nonsynonymous substitution

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/11114436

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Episodic adaptive evolution of primate lysozymes

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/11114436

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12 December 2020

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inferred from PubMed ID database lookup

Antarctic fish hemoglobins: evidence for adaptive evolution at subzero temperature.

1 reference

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/11114436

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Positive selection on the H3 hemagglutinin gene of human influenza virus A.

1 reference

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/11114436

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Patterns of divergence during evolution of alpha 1-proteinase inhibitors in mammals

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/11114436

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Evolution of the Sry genes

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/11114436

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Large-scale search for genes on which positive selection may operate

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/11114436

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Episodic evolution mediates interspecies transfer of a murine coronavirus

1 reference

stated in

PubMed

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https://pubmed.ncbi.nlm.nih.gov/11114436

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Slightly Deleterious Mutant Substitutions in Evolution

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/11114436

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Positive selection and sequence rearrangements generate extensive polymorphism in the gamete recognition protein bindin

1 reference

stated in

PubMed

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https://pubmed.ncbi.nlm.nih.gov/11114436

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Positive Darwinian selection on two homologous fertilization proteins: what is the selective pressure driving their divergence?

1 reference

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/11114436

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A rapidly evolving homeobox at the site of a hybrid sterility gene

1 reference

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/11114436

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Molecular phylogeny of Fv1

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/11114436

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Molecular evolution of cytochrome c oxidase subunit IV: evidence for positive selection in simian primates

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/11114436

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/11114436

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A method for estimating the numbers of synonymous and nonsynonymous substitutions per site

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/11114436

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Likelihood ratio tests for detecting positive selection and application to primate lysozyme evolution

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/11114436

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Positive selection and interallelic recombination at the merozoite surface antigen-1 (MSA-1) locus of Plasmodium falciparum

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/11114436

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Nucleotide Sequence Evolution at the κ-Casein Locus: Evidence for Positive Selection Within the Family Bovidae

1 reference

stated in

PubMed

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https://pubmed.ncbi.nlm.nih.gov/11114436

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A new method of inference of ancestral nucleotide and amino acid sequences

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/11114436

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Codon-substitution models for heterogeneous selection pressure at amino acid sites

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/11114436

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Rhodopsin evolution in the dark

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/11114436

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12 December 2020

based on heuristic

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Molecular genetics of ecological diversification: duplication and rapid evolution of toxin genes of the venomous gastropod Conus

1 reference

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/11114436

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Positive darwinian selection observed at the variable-region genes of immunoglobulins

1 reference

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/11114436

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Molecular evolution of the COX7A gene family in primates

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/11114436

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

New methods for estimating the numbers of synonymous and nonsynonymous substitutions

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/11114436

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The evolution of the type I interferon gene family in mammals

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/11114436

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Evidence for positive selection in foot-and-mouth disease virus capsid genes from field isolates

1 reference

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/11114436

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12 December 2020

based on heuristic

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Conserved evolution of the Rh50 gene compared to its homologous Rh blood group gene.

1 reference

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/11114436

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12 December 2020

based on heuristic

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Recombination of hepatitis D virus RNA sequences and its implications

1 reference

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/11114436

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12 December 2020

based on heuristic

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The structural basis of molecular adaptation

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/11114436

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Rapid evolution of a primate sperm protein: relaxation of functional constraint or positive Darwinian selection?

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/11114436

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Rates of nucleotide substitution and mammalian nuclear gene evolution. Approximate and maximum-likelihood methods lead to different conclusions.

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/11114436

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Probabilistic reconstruction of ancestral protein sequences

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/11114436

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Long term trends in the evolution of H(3) HA1 human influenza type A

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/11114436

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Maximum-likelihood analysis of molecular adaptation in abalone sperm lysin reveals variable selective pressures among lineages and sites

1 reference

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/11114436

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A likelihood approach for comparing synonymous and nonsynonymous nucleotide substitution rates, with application to the chloroplast genome

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/11114436

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Synonymous substitution rates in Drosophila: Mitochondrial versus nuclear genes

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/11114436

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Positive selection for colicin diversity in bacteria

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/11114436

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identification of target amino acids that affect interactions of fungal polygalacturonases and their plant inhibitors

1 reference

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Crossref

reference URL

https://api.crossref.org/works/10.1016%2FS0169-5347%2800%2901994-7

retrieved

7 January 2021

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Identifiers

DOI

10.1016/S0169-5347(00)01994-7

1 reference

stated in

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

137662

OpenCitations bibliographic resource ID

137662

1 reference

stated in

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

137662

PMC publication ID

7134603

0 references

PubMed publication ID

11114436

1 reference

stated in

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

137662

 

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