RNA chaperoning and intrinsic disorder in the core proteins of Flaviviridae (Q27485379)

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Caroline Gabus

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Damien Ficheux

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Jean-Luc Darlix

A 5' RNA element promotes dengue virus RNA synthesis on a circular genome

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language of work or name

English

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publication date

February 2008

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published in

Nucleic Acids Research

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volume

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issue

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page(s)

712-25

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cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2241907

Analysis of hepatitis C virus RNA dimerization and core-RNA interactions

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2241907

Core protein of pestiviruses is processed at the C terminus by signal peptide peptidase

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2241907

Hepatitis C virus core protein is a dimeric alpha-helical protein exhibiting membrane protein features

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2241907

Long-Range RNA-RNA Interactions Circularize the Dengue Virus Genome

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2241907

Functional Analysis of Mosquito-Borne Flavivirus Conserved Sequence Elements within 3' Untranslated Region of West Nile Virus by Use of a Reporting Replicon That Differentiates between Viral Translation and RNA Replication

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2241907

Flavivirus Capsid Is a Dimeric Alpha-Helical Protein

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2241907

Intramembrane proteolysis promotes trafficking of hepatitis C virus core protein to lipid droplets

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2241907

Essential role of cyclization sequences in flavivirus RNA replication

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2241907

N-terminal protease of pestiviruses: identification of putative catalytic residues by site-directed mutagenesis

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2241907

Processing of the envelope glycoproteins of pestiviruses

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2241907

Processing of pestivirus polyprotein: cleavage site between autoprotease and nucleocapsid protein of classical swine fever virus

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2241907

NS2B-3 proteinase-mediated processing in the yellow fever virus structural region: in vitro and in vivo studies

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2241907

Biosynthesis and biochemical properties of the hepatitis C virus core protein

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2241907

Processing of the intracellular form of the west Nile virus capsid protein by the viral NS2B-NS3 protease: an in vitro study

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2241907

Genomic organization of GB viruses A and B: two new members of the Flaviviridae associated with GB agent hepatitis

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2241907

Replication of hepatitis C virus

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2241907

Global epidemiology of hepatitis C virus infection

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2241907

Gene mapping of the putative structural region of the hepatitis C virus genome by in vitro processing analysis

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2241907

Requirements for signal peptide peptidase-catalyzed intramembrane proteolysis

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2241907

Strategies for RNA folding and assembly

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2241907

First glimpses at structure-function relationships of the nucleocapsid protein of retroviruses

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2241907

IUPred: web server for the prediction of intrinsically unstructured regions of proteins based on estimated energy content

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2241907

Why are "natively unfolded" proteins unstructured under physiologic conditions?

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2241907

Properties, functions, and drug targeting of the multifunctional nucleocapsid protein of the human immunodeficiency virus.

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2241907

Towards proteomic approaches for the identification of structural disorder

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2241907

Characterization of a nucleocapsid-like region and of two distinct primer tRNALys,2 binding sites in the endogenous retrovirus Gypsy

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2241907

Assessing protein disorder and induced folding

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2241907

FoldIndex: a simple tool to predict whether a given protein sequence is intrinsically unfolded

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2241907

Unique features of hepatitis C virus capsid formation revealed by de novo cell-free assembly

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2241907

The role of structural disorder in the function of RNA and protein chaperones

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2241907

West Nile virus core protein; tetramer structure and ribbon formation.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2241907

The hepatitis C virus Core protein is a potent nucleic acid chaperone that directs dimerization of the viral (+) strand RNA in vitro

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2241907

The fragile X mental retardation protein has nucleic acid chaperone properties

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2241907

Solution structure of dengue virus capsid protein reveals another fold

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2241907

RNA chaperone StpA loosens interactions of the tertiary structure in the td group I intron in vivo

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2241907

The ubiquitous nature of RNA chaperone proteins

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2241907

What does it mean to be natively unfolded?

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2241907

The domains required to direct core proteins of hepatitis C virus and GB virus-B to lipid droplets share common features with plant oleosin proteins.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2241907

Copy-choice recombination by reverse transcriptases: reshuffling of genetic markers mediated by RNA chaperones

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2241907

NACP, a protein implicated in Alzheimer's disease and learning, is natively unfolded

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2241907

Flavivirus premembrane protein cleavage and spike heterodimer secretion require the function of the viral proteinase NS3.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2241907

DNA strand exchange and selective DNA annealing promoted by the human immunodeficiency virus type 1 nucleocapsid protein

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2241907

An RNA chaperone activity of non-specific RNA binding proteins in hammerhead ribozyme catalysis

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2241907

Facilitation of hammerhead ribozyme catalysis by the nucleocapsid protein of HIV-1 and the heterogeneous nuclear ribonucleoprotein A1

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2241907

Protein Enhancement of Hammerhead Ribozyme Catalysis

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2241907

RNA chaperones and the RNA folding problem

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2241907

Unusual multiple recoding events leading to alternative forms of hepatitis C virus core protein from genotype 1b.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2241907

Sequence motifs required for lipid droplet association and protein stability are unique to the hepatitis C virus core protein

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2241907

Disordered RNA chaperone proteins: from functions to disease

2 June 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKM1051

Hepatitis C virus core protein acts as a trans-modulating factor on internal translation initiation of the viral RNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKM1051

Predicting intrinsic disorder from amino acid sequence

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKM1051

The pairwise energy content estimated from amino acid composition discriminates between folded and intrinsically unstructured proteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKM1051

Structural determinants that target the hepatitis C virus core protein to lipid droplets.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKM1051

The N-terminal half of the core protein of hepatitis C virus is sufficient for nucleocapsid formation

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKM1051

RNA binding properties of core protein of the flavivirus Kunjin

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKM1051

A novel two-dimensional electrophoresis technique for the identification of intrinsically unstructured proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKM1051

Biophysical characterization of hepatitis C virus core protein: implications for interactions within the virus and host

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKM1051

Host range studies of GB virus-B hepatitis agent, the closest relative of hepatitis C virus, in New World monkeys and chimpanzees

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKM1051

Hepatitis C and liver transplantation

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKM1051

Thermal behavior of proteins: heat-resistant proteins and their heat-induced secondary structural changes

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18033802

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Nucleic-acid-chaperone activity of retroviral nucleocapsid proteins: significance for viral replication

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18033802

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

A novel strategy for the purification of recombinantly expressed unstructured protein domains

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18033802

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKM1051

1 reference

release_doc5rnfj4jdtvggk4n7clsu4pa

Fatcat ID

0 references

1 reference

1 reference

PubMed publication ID

18033802

1 reference