Nucleic acid binding and chaperone properties of HIV-1 Gag and nucleocapsid proteins (Q25257759)

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Maria A Urbaneja

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Catherine V Hixson

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Donald G Johnson

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Siddhartha A Datta

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Matthew J Fivash

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Andrew G Stephen

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Robert J Fisher

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Jose R Casas-Finet

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Alan Rein

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Ioulia Rouzina

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Mark C Williams

Nucleocapsid and Matrix Protein Contributions to Selective Human Immunodeficiency Virus Type 1 Genomic RNA Packaging

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language of work or name

English

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publication date

2006

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published in

Nucleic Acids Research

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volume

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issue

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page(s)

593-605

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cites work

1 reference

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NMR structure of the HIV-1 nucleocapsid protein bound to stem-loop SL2 of the psi-RNA packaging signal. Implications for genome recognition

7 April 2017

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A mechanism for plus-strand transfer enhancement by the HIV-1 nucleocapsid protein during reverse transcription

7 April 2017

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Dynamical behavior of the HIV-1 nucleocapsid protein

7 April 2017

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Structure of the HIV-1 nucleocapsid protein bound to the SL3 psi-RNA recognition element

7 April 2017

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RNA is a structural element in retrovirus particles

7 April 2017

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Nucleic acid chaperone activity of HIV-1 nucleocapsid protein: critical role in reverse transcription and molecular mechanism

25 May 2017

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A HIV-1 minimal gag protein is superior to nucleocapsid at in vitro annealing and exhibits multimerization-induced inhibition of reverse transcription

28 September 2017

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The stoichiometry of Gag protein in HIV-1.

28 September 2017

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Mechanistic insights into the kinetics of HIV-1 nucleocapsid protein-facilitated tRNA annealing to the primer binding site

28 September 2017

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Are weak protein–protein interactions the general rule in capsid assembly?

28 September 2017

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DNA condensation by the nucleocapsid protein of HIV-1: a mechanism ensuring DNA protection

28 September 2017

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Structural organization of authentic, mature HIV-1 virions and cores

28 September 2017

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Cofactors for human immunodeficiency virus type 1 cDNA integration in vitro

28 September 2017

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Retrovirus capsid protein assembly arrangements

28 September 2017

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Specific zinc-finger architecture required for HIV-1 nucleocapsid protein's nucleic acid chaperone function

28 September 2017

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HIV-1 nucleocapsid protein as a nucleic acid chaperone: spectroscopic study of its helix-destabilizing properties, structural binding specificity, and annealing activity

28 September 2017

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Subtle alterations of the native zinc finger structures have dramatic effects on the nucleic acid chaperone activity of human immunodeficiency virus type 1 nucleocapsid protein

28 September 2017

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HIV-1 nucleocapsid protein activates transient melting of least stable parts of the secondary structure of TAR and its complementary sequence

28 September 2017

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Thermodynamics of DNA interactions from single molecule stretching experiments.

28 September 2017

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Mechanisms of retroviral recombination

28 September 2017

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Proteolytic processing of the p2/nucleocapsid cleavage site is critical for human immunodeficiency virus type 1 RNA dimer maturation.

28 September 2017

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Modulation of HIV-like particle assembly in vitro by inositol phosphates

28 September 2017

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Mechanism for nucleic acid chaperone activity of HIV-1 nucleocapsid protein revealed by single molecule stretching.

28 September 2017

1 reference

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Extended nucleocapsid protein is cleaved from the Gag-Pol precursor of human immunodeficiency virus type 1.

28 September 2017

1 reference

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Force-induced melting of the DNA double helix 1. Thermodynamic analysis

28 September 2017

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Monitoring DNA/poly-L-lysine polyplex formation with time-resolved multiangle laser light scattering

28 September 2017

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Organization of immature human immunodeficiency virus type 1

28 September 2017

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Zinc finger structures in the human immunodeficiency virus type 1 nucleocapsid protein facilitate efficient minus- and plus-strand transfer

28 September 2017

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Human immunodeficiency virus type 1 nucleocapsid protein can prevent self-priming of minus-strand strong stop DNA by promoting the annealing of short oligonucleotides to hairpin sequences

28 September 2017

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Nucleic acid sequence discrimination by the HIV-1 nucleocapsid protein NCp7: a fluorescence study

28 September 2017

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Coupled integration of human immunodeficiency virus type 1 cDNA ends by purified integrase in vitro: stimulation by the viral nucleocapsid protein

28 September 2017

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The role of Pr55(gag) in the annealing of tRNA3Lys to human immunodeficiency virus type 1 genomic RNA

28 September 2017

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The human immunodeficiency virus type 1 Gag polyprotein has nucleic acid chaperone activity: possible role in dimerization of genomic RNA and placement of tRNA on the primer binding site

28 September 2017

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Time-resolved fluorescence investigation of the human immunodeficiency virus type 1 nucleocapsid protein: influence of the binding of nucleic acids

28 September 2017

1 reference

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In vitro assembly properties of human immunodeficiency virus type 1 Gag protein lacking the p6 domain.

28 September 2017

1 reference

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DNA condensation by multivalent cations

28 September 2017

1 reference

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Sequence-Specific Binding of Human Immunodeficiency Virus Type 1 Nucleocapsid Protein to Short Oligonucleotides

28 September 2017

1 reference

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Cryo-electron microscopy reveals ordered domains in the immature HIV-1 particle

28 September 2017

1 reference

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Human immunodeficiency virus type 1 nucleocapsid protein promotes efficient strand transfer and specific viral DNA synthesis by inhibiting TAR-dependent self-priming from minus-strand strong-stop DNA.

28 September 2017

1 reference

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28 September 2017

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Overstretching B-DNA: the elastic response of individual double-stranded and single-stranded DNA molecules

28 September 2017

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The two zinc fingers in the human immunodeficiency virus type 1 nucleocapsid protein are not functionally equivalent

28 September 2017

1 reference

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Structural and dynamic characterization of the aromatic amino acids of the human immunodeficiency virus type I nucleocapsid protein zinc fingers and their involvement in heterologous tRNA(Phe) binding: a steady-state and time-resolved fluorescence s

28 September 2017

1 reference

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DNA strand exchange and selective DNA annealing promoted by the human immunodeficiency virus type 1 nucleocapsid protein

28 September 2017

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The p2 domain of human immunodeficiency virus type 1 Gag regulates sequential proteolytic processing and is required to produce fully infectious virions.

28 September 2017

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The spacer peptide between human immunodeficiency virus capsid and nucleocapsid proteins is essential for ordered assembly and viral infectivity

28 September 2017

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Self-assembly in vitro of purified CA-NC proteins from Rous sarcoma virus and human immunodeficiency virus type 1.

28 September 2017

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Deficiency of 60 to 70S RNA in murine leukemia virus particles assembled in cells treated with actinomycin D

28 September 2017

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A deletion mutation in the 5' part of the pol gene of Moloney murine leukemia virus blocks proteolytic processing of the gag and pol polyproteins.

28 September 2017

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Point mutants of Moloney murine leukemia virus that fail to package viral RNA: evidence for specific RNA recognition by a "zinc finger-like" protein sequence

28 September 2017

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Noninfectious human immunodeficiency virus type 1 mutants deficient in genomic RNA.

28 September 2017

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Assembly of recombinant human immunodeficiency virus type 1 capsid protein in vitro

28 September 2017

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Gag proteins of the highly replicative MN strain of human immunodeficiency virus type 1: posttranslational modifications, proteolytic processings, and complete amino acid sequences

28 September 2017

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DNA "melting" proteins. IV. Fluorescence measurements of binding parameters for bacteriophage T4 gene 32-protein to mono-, oligo-, and polynucleotides

28 September 2017

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Image reconstructions of helical assemblies of the HIV-1 CA protein

28 September 2017

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A conformational switch controlling HIV-1 morphogenesis

31 May 2018

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Binding properties of the human immunodeficiency virus type 1 nucleocapsid protein p7 to a model RNA: elucidation of the structural determinants for function

31 May 2018

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Theoretical aspects of DNA-protein interactions: co-operative and non-co-operative binding of large ligands to a one-dimensional homogeneous lattice.

31 May 2018

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Characterization of ribosomal frameshifting in HIV-1 gag-pol expression

31 May 2018

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Ion effects on ligand-nucleic acid interactions

31 May 2018

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LINE-1 retrotransposition requires the nucleic acid chaperone activity of the ORF1 protein

31 May 2018

1 reference

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Folding of the Tetrahymena ribozyme by polyamines: importance of counterion valence and size

28 November 2018

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Mechanical measurement of single-molecule binding rates: kinetics of DNA helix-destabilization by T4 gene 32 protein

28 November 2018

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Impact of the terminal bulges of HIV-1 cTAR DNA on its stability and the destabilizing activity of the nucleocapsid protein NCp7.

28 November 2018

1 reference

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Kinetic regulation of single DNA molecule denaturation by T4 gene 32 protein structural domains.

28 November 2018

1 reference

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Role of counterion condensation in folding of the Tetrahymena ribozyme. II. Counterion-dependence of folding kinetics

28 November 2018

1 reference

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Self-priming of retroviral minus-strand strong-stop DNAs.

28 November 2018

1 reference

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Heteronuclear NMR studies of the interaction of tRNA3Lys with HIV-1 nucleocapsid protein11Edited by M. F. Summers

28 November 2018

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Assembly and analysis of conical models for the HIV-1 core

28 November 2018

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Analysis of effects of salts and uncharged solutes on protein and nucleic acid equilibria and processes: a practical guide to recognizing and interpreting polyelectrolyte effects, Hofmeister effects, and osmotic effects of salts.

28 November 2018

1 reference

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Properties and growth mechanism of the ordered aggregation of a model RNA by the HIV-1 nucleocapsid protein: An electron microscopy investigation

28 November 2018

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Ordered aggregation of ribonucleic acids by the human immunodeficiency virus type 1 nucleocapsid protein.

28 November 2018

1 reference

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Human immunodeficiency virus nucleocapsid protein accelerates strand transfer of the terminally redundant sequences involved in reverse transcription

28 November 2018

1 reference

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Recombination during reverse transcription: an evaluation of the role of the nucleocapsid protein

28 November 2018

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12 December 2020

Mechanism of minus strand strong stop transfer in HIV-1 reverse transcription

1 reference

12 December 2020

Nucleic acid binding properties of recombinant Zn2 HIV-1 nucleocapsid protein are modulated by COOH-terminal processing

1 reference

12 December 2020

DNA binding properties of the zinc‐bound and zinc‐free HIV nucleocapsid protein: supercoiled DNA unwinding and DNA‐protein cleavable complex formation

1 reference

12 December 2020

Specific recognition of primer tRNALys3 by HIV-1 nucleocapsid protein: involvement of the zinc fingers and the N-terminal basic extension

1 reference

12 December 2020

Steps of the acceptor invasion mechanism for HIV-1 minus strand strong stop transfer

1 reference

12 December 2020

Alteration of nucleic acid structure and stability modulates the efficiency of minus-strand transfer mediated by the HIV-1 nucleocapsid protein

1 reference

12 December 2020

Affinities of the nucleocapsid protein for variants of SL3 RNA in HIV-1

1 reference

12 December 2020

Destabilization of the HIV-1 complementary sequence of TAR by the nucleocapsid protein through activation of conformational fluctuations

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12 December 2020

Identifiers

DOI

10.1093/NAR/GKJ458

1 reference

release_7skqykiyo5fmtmq6rwlzwox2oy

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/7skqykiyo5fmtmq6rwlzwox2oy

24 November 2022

mapped directly with Wikidata item

1 reference

1 reference

PubMed publication ID

16449201

1 reference