MUSCLE: multiple sequence alignment with high accuracy and high throughput (Q24613456)

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English	MUSCLE: multiple sequence alignment with high accuracy and high throughput	scientific article

Statements

instance of

scholarly article

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title

MUSCLE: multiple sequence alignment with high accuracy and high throughput (English)

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main subject

sequence alignment

1 reference

based on heuristic

inferred from title

author name string

Robert C Edgar

series ordinal

1

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language of work or name

English

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publication date

2004

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published in

Nucleic Acids Research

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volume

32

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issue

5

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page(s)

1792-7

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uses

MUSCLE

1 reference

reference URL

http://www.drive5.com/muscle/

retrieved

21 September 2017

cites work

MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390337

retrieved

7 April 2017

SMART: a web-based tool for the study of genetically mobile domains

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390337

retrieved

7 April 2017

A comprehensive comparison of multiple sequence alignment programs

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390337

retrieved

7 April 2017

SMART, a simple modular architecture research tool: identification of signaling domains

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390337

retrieved

7 April 2017

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390337

retrieved

7 April 2017

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390337

retrieved

7 April 2017

The neighbor-joining method: a new method for reconstructing phylogenetic trees

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390337

retrieved

7 April 2017

T-Coffee: A novel method for fast and accurate multiple sequence alignment

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390337

retrieved

7 April 2017

Protein structure alignment by incremental combinatorial extension (CE) of the optimal path

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390337

retrieved

7 April 2017

Touring protein fold space with Dali/FSSP

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390337

retrieved

7 April 2017

SCOP: a structural classification of proteins database for the investigation of sequences and structures

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390337

retrieved

7 April 2017

Recent progress in multiple sequence alignment: a survey

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390337

retrieved

7 April 2017

The ASTRAL compendium for protein structure and sequence analysis

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390337

retrieved

7 April 2017

CAFASP-1: critical assessment of fully automated structure prediction methods

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390337

retrieved

7 April 2017

Significant improvement in accuracy of multiple protein sequence alignments by iterative refinement as assessed by reference to structural alignments

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390337

retrieved

7 April 2017

On the complexity of multiple sequence alignment

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390337

retrieved

7 April 2017

Comprehensive study on iterative algorithms of multiple sequence alignment

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390337

retrieved

7 April 2017

The alignment of sets of sequences and the construction of phyletic trees: an integrated method

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390337

retrieved

7 April 2017

LAGAN and Multi-LAGAN: efficient tools for large-scale multiple alignment of genomic DNA

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390337

retrieved

7 April 2017

Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390337

retrieved

7 April 2017

Progressive sequence alignment as a prerequisite to correct phylogenetic trees

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390337

retrieved

7 April 2017

Local homology recognition and distance measures in linear time using compressed amino acid alphabets

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390337

retrieved

27 September 2017

NCBI Reference Sequence project: update and current status

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390337

retrieved

27 September 2017

MaxBench: evaluation of sequence and structure comparison methods

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390337

retrieved

27 September 2017

BAliBASE (Benchmark Alignment dataBASE): enhancements for repeats, transmembrane sequences and circular permutations

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390337

retrieved

27 September 2017

BAliBASE: a benchmark alignment database for the evaluation of multiple alignment programs

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390337

retrieved

27 September 2017

SMART: identification and annotation of domains from signalling and extracellular protein sequences

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390337

retrieved

27 September 2017

Dirichlet mixtures: a method for improved detection of weak but significant protein sequence homology

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390337

retrieved

27 September 2017

Optimal protein structure alignments by multiple linkage clustering: application to distantly related proteins

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390337

retrieved

27 September 2017

A comparison of scoring functions for protein sequence profile alignment

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390337

retrieved

30 May 2018

Rose: generating sequence families

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390337

retrieved

30 May 2018

COACH: profile-profile alignment of protein families using hidden Markov models

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390337

retrieved

28 November 2018

Align-m--a new algorithm for multiple alignment of highly divergent sequences

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390337

retrieved

28 November 2018

APDB: a novel measure for benchmarking sequence alignment methods without reference alignments.

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390337

retrieved

28 November 2018

Structure comparison and structure patterns

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390337

retrieved

28 November 2018

Large-scale comparison of protein sequence alignment algorithms with structure alignments

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390337

retrieved

28 November 2018

Phylogenetic inference in protein superfamilies: analysis of SH2 domains

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390337

retrieved

28 November 2018

Estimating amino acid substitution models: a comparison of Dayhoff's estimator, the resolvent approach and a maximum likelihood method

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/15034147

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

COMPASS: a tool for comparison of multiple protein alignments with assessment of statistical significance

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/15034147

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

DOI

10.1093/NAR/GKH340

1 reference

stated in

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

67270

OpenCitations bibliographic resource ID

67270

1 reference

stated in

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

67270

PMC publication ID

390337

1 reference

stated in

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

67270

PubMed publication ID

15034147

1 reference

stated in

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

67270

ResearchGate publication ID

8667716

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