Prof. Ulas Bagci Profile

Prof. Ulas Bagci

at Northwestern Univ

SPIE Involvement:

Conference Program Committee | Author

Proceedings Article | 7 April 2023 Presentation + Paper

RUPNet: residual upsampling network for real-time polyp segmentation

Nikhil Kumar Tomar, Ulas Bagci, Debesh Jha

Proceedings Volume 12465, 124651L (2023) https://doi.org/10.1117/12.2655126

KEYWORDS: Biomedical applications, Polyps, Cancer detection, Image segmentation, Colorectal cancer, Colon, Network architectures, Diagnostics, Deep learning

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SPIE Journal Paper | 6 March 2023 Open Access

Relational reasoning network for anatomical landmarking

Neslisah Torosdagli, Syed Anwar, Payal Verma, Denise Liberton, Janice Lee, Wade Han, Ulas Bagci

JMI, Vol. 10, Issue 02, 024002, (March 2023) https://doi.org/10.1117/12.10.1117/1.JMI.10.2.024002

KEYWORDS: Anatomy, Bone, Machine learning, Electronic filtering, Deformation, Image segmentation, Ruthenium, Cone beam computed tomography, Deep learning, Pathology

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SPIE Journal Paper | 6 March 2023 Open Access

Relational reasoning network for anatomical landmarking

Neslisah Torosdagli, Syed Anwar, Payal Verma, Denise Liberton, Janice Lee, Wade Han, Ulas Bagci

JMI, Vol. 10, Issue 02, 024002, (March 2023) https://doi.org/10.1117/12.10.1117/1.JMI.10.2.024002

KEYWORDS: Anatomy, Bone, Machine learning, Electronic filtering, Deformation, Image segmentation, Ruthenium, Cone beam computed tomography, Deep learning, Pathology

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Proceedings Article | 4 April 2022 Presentation + Paper

Detecting COVID-19 from respiratory sound recordings with transformers

Idil Aytekin, Onat Dalmaz, Haydar Ankishan, Emine Saritas, Ulas Bagci, Tolga Cukur, Haydar Celik

Proceedings Volume 12033, 1203306 (2022) https://doi.org/10.1117/12.2611490

KEYWORDS: Transformers, Visual process modeling, Performance modeling, Data modeling, Machine learning, Signal detection, Image classification

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Proceedings Article | 4 April 2022 Poster + Paper

Enhancing organ at risk segmentation with improved deep neural networks

Ilkin Isler, Curtis Lisle, Justin Rineer, Patrick Kelly, Damla Turgut, Jacob Ricci, Ulas Bagci

Proceedings Volume 12032, 1203233 (2022) https://doi.org/10.1117/12.2611498

KEYWORDS: Image segmentation, Lung, Convolution, Cancer, Spinal cord, Computer programming, Optic nerve, 3D image processing, Medical imaging, Medical imaging applications

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SPIE Journal Paper | 6 January 2021 Open Access

Quick guide on radiology image pre-processing for deep learning applications in prostate cancer research

Samira Masoudi, Stephanie A. Harmon, Sherif Mehralivand, Stephanie Walker, Harish Raviprakash, Ulas Bagci, Peter Choyke, Baris Turkbey

JMI, Vol. 8, Issue 01, 010901, (January 2021) https://doi.org/10.1117/12.10.1117/1.JMI.8.1.010901

KEYWORDS: Magnetic resonance imaging, Computed tomography, Image segmentation, Radiology, Medical imaging, Image registration, Prostate cancer, Image quality, Image processing, Tissues

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Proceedings Article | 14 March 2011 Paper

Orientation estimation of anatomical structures in medical images for object recognition

Ulaş Bağci, Jayaram Udupa, Xinjian Chen

Proceedings Volume 7962, 79622L (2011) https://doi.org/10.1117/12.878184

KEYWORDS: Matrices, Image segmentation, Medical imaging, Object recognition, Statistical analysis, Computed tomography, Phased array optics, Lithium, Binary data, Detection and tracking algorithms

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Proceedings Article | 2 March 2011 Paper

Intensity non-standardness affects computer recognition of anatomical structures

Ulas Bagci, Jayaram Udupa, Xinjian Chen

Proceedings Volume 7964, 79642M (2011) https://doi.org/10.1117/12.877779

KEYWORDS: Image quality standards, Magnetic resonance imaging, Image segmentation, Systems modeling, Object recognition, Tissues, Image quality, Fluorescence correlation spectroscopy, Image processing, Medical imaging

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Proceedings Article | 13 March 2010 Paper

Ball-scale based hierarchical multi-object recognition in 3D medical images

Ulas Bağci, Jayaram Udupa, Xinjian Chen

Proceedings Volume 7623, 762345 (2010) https://doi.org/10.1117/12.839920

KEYWORDS: Image segmentation, Data modeling, 3D modeling, Computing systems, Skin, 3D image processing, Object recognition, Statistical modeling, Medical imaging, Image processing

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Proceedings Article | 27 February 2010 Paper

3D automatic anatomy recognition based on iterative graph-cut-ASM

Xinjian Chen, Jayaram Udupa, Ulas Bagci, Abass Alavi, Drew Torigian

Proceedings Volume 7625, 76251T (2010) https://doi.org/10.1117/12.844551

KEYWORDS: Image segmentation, 3D image processing, Medical imaging, Kidney, Detection and tracking algorithms, Pathology, Image processing, Brain, Liver, Spleen

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Proceedings Article | 24 February 2010 Paper

The influence of intensity standardization on medical image registration

Ulas Bagci, Jayaram Udupa, Li Bai

Proceedings Volume 7625, 76251X (2010) https://doi.org/10.1117/12.843969

KEYWORDS: Image registration, Tissues, Image quality standards, Magnetic resonance imaging, Medical imaging, Image segmentation, Scanners, Nonuniformity corrections, Image analysis, Image quality

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Proceedings Article | 11 March 2008 Paper

Registration of standardized histological images in feature space

Ulaş Bağci, Li Bai

Proceedings Volume 6914, 69142V (2008) https://doi.org/10.1117/12.770219

KEYWORDS: Image registration, Image processing, Content addressable memory, Tissues, 3D image processing, 3D image reconstruction, Image fusion, Reconstruction algorithms, 3D acquisition, Brain

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