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12 pages, 1147 KiB  
Article
Effects of Aqueous Extracts of Lantana camara L. on Germination of Setaria viridis (L.) P.Beauv. Seeds with Different Degrees of Dormancy
by Marcelly Eduarda da Cunha Lázaro-dos-Santos, Nadine Tonelli Cavalari, Everson dos Santos Ribeiro, Henrique Henning Boyd da Cunha, Livia Marques Casanova, Fernanda Reinert, Bianca Ortiz-Silva and Luana Beatriz dos Santos Nascimento
Seeds 2024, 3(4), 677-688; https://doi.org/10.3390/seeds3040044 - 16 Dec 2024
Viewed by 200
Abstract
Setaria viridis (green foxtail) is an invasive weed species in various agricultural systems, prompting the search for effective compounds to control its germination. The species has primary and secondary dormancy depending on the time elapsed since post-harvesting, making management strategies more difficult. Several [...] Read more.
Setaria viridis (green foxtail) is an invasive weed species in various agricultural systems, prompting the search for effective compounds to control its germination. The species has primary and secondary dormancy depending on the time elapsed since post-harvesting, making management strategies more difficult. Several weed plants, such as Lantana camara L., can be a source of allelochemicals with herbicidal effects, being a potential candidate for the control of S. viridis. We investigated the effects of L. camara extracts on the germination and initial growth of S. viridis seeds with different degrees of dormancy and revealed a dose-dependent bioherbicide effect. Aqueous extracts of L. camara were analyzed by HPLC-DAD and applied (0.1 to 5.0 mg/mL) to 12- and 110-day post-harvest S. viridis seeds. Seeds were evaluated daily and germination percentage (GP), speed germination index (SGI), and radicle length (RL) were calculated. Phenolic acids and flavonoids were major components of the extract. Lower concentrations (0.1 and 0.5 mg/mL) stimulated and accelerated the germination of S. viridis, breaking its dormancy. Both 1.0 and 5.0 mg/mL concentrations hindered germination, especially in 12 dph seeds. The 1.0 mg/mL concentration resulted in longer roots, whereas 5.0 mg/mL inhibited root development. Lantana camara extracts potentially stimulate germination and radicle growth of S. viridis at low concentrations while inhibiting these parameters at higher doses. These results may open new possibilities for using L. camara in weed-control strategies. Full article
(This article belongs to the Special Issue Seed Germination Ecophysiology of Invasive Species)
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Figure 1

Figure 1
<p>Effects of <span class="html-italic">L. camara</span> aqueous extracts on the germination rate of <span class="html-italic">S. viridis</span> seeds. (<b>a</b>) 12 dph seeds; (<b>b</b>) 110 dph seeds. Values are represented as means and the bars represent the standard deviation. Different letters indicate values that differ significantly at <span class="html-italic">p &lt;</span> 0.05, according to One-way ANOVA, followed by the Holm-Sidak test.</p>
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<p>Effects of <span class="html-italic">L. camara</span> aqueous extracts on germination speed index—GSI: (<b>a</b>) 12 dph seeds; (<b>b</b>) 110 dph seeds. Different letters indicate values that differ significantly at <span class="html-italic">p</span> &lt; 0.05, according to One-way ANOVA, followed by the Holm–Sidak test.</p>
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<p>Effects of <span class="html-italic">L. camara</span> aqueous extract on root length. (<b>a</b>) 12 dph seeds; (<b>b</b>) 110 dph seeds. Different letters indicate values that differ significantly at <span class="html-italic">p</span> ≤ 0.05, according to One-way ANOVA, followed by the Holm–Sidak test.</p>
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13 pages, 1660 KiB  
Review
Agroecological Weed Management and the Potential Role of Fungi-Based Bioherbicides in Conservation: Advantages, Applications and Future Prospects
by Dimitra Petraki, Panagiotis Kanatas, Stavros Zannopoulos, Metaxia Kokkini, Nikolaos Antonopoulos, Ioannis Gazoulis and Ilias Travlos
Conservation 2024, 4(4), 847-859; https://doi.org/10.3390/conservation4040050 - 12 Dec 2024
Viewed by 397
Abstract
Recently, there has been growing interest by farmers and researchers in various agroecological approaches enhancing biodiversity and conservation including the use of natural herbicides derived from fungi to provide adequate weed control. This change is driven by growing concerns about herbicide resistance, environmental [...] Read more.
Recently, there has been growing interest by farmers and researchers in various agroecological approaches enhancing biodiversity and conservation including the use of natural herbicides derived from fungi to provide adequate weed control. This change is driven by growing concerns about herbicide resistance, environmental impacts and regulatory requirements. This review summarizes the results of various studies and highlights the efficacy and benefits of fungal bioherbicides in weed control. Fungi-based bioherbicides utilize the natural weed suppression capability of selected fungi to reduce weed density and competitiveness without completely eradicating the plants and such an approach is at the core of agroecology. Bioherbicides contribute to conservation by providing an environmentally friendly alternative to chemical herbicides. By reducing the reliance on synthetic chemicals, fungal bioherbicides help preserve soil health, water quality and protect non-target species, including beneficial organisms such as pollinators and soil microbes. They also promote biodiversity by selectively targeting specific weed species, leaving native plants and other organisms unharmed and favoring diversified weed flora without the dominance of a few species. Despite their promising potential, bioherbicides face several challenges, including delayed action, production difficulties and the potential toxicity of certain fungal toxins to mammals. This review highlights the growing adoption of fungal bioherbicides as an eco-friendly component of Integrated Weed Management (IWM). Further research is necessary to identify optimal fungal strains for controlling persistent weeds without putting at risk the overall biodiversity and to develop improved formulations for enhanced efficacy. Full article
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<p>Advantages and disadvantages of fungal bioherbicides.</p>
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<p>Documents published annually on fungal bioherbicides, based on a literature review in the Scopus database from 2000 to 2024.</p>
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16 pages, 4377 KiB  
Article
Biochemical and Physiological Responses of Weeds to the Application of a Botanical Herbicide Based on Cinnamon Essential Oil
by Sofiene Ben Kaab, Juan Antonio Fernández Pierna, Berenice Foncoux, Philippe Compère, Vincent Baeten and M. Haïssam Jijakli
Plants 2024, 13(23), 3432; https://doi.org/10.3390/plants13233432 - 6 Dec 2024
Viewed by 733
Abstract
The use of chemical herbicides induces negative impacts on the environment, animals, and human health. It also leads to the development of herbicide-resistant weeds. In this context, natural and efficacious herbicides are highly sought after. Essential oils are natural compounds with antibacterial, fungicidal, [...] Read more.
The use of chemical herbicides induces negative impacts on the environment, animals, and human health. It also leads to the development of herbicide-resistant weeds. In this context, natural and efficacious herbicides are highly sought after. Essential oils are natural compounds with antibacterial, fungicidal, and phytotoxic properties. For this reason, we studied the post-emergence phytotoxic effect of cinnamon essential oil (cinnamon EO) from Cinnamomum cassia under greenhouse conditions, testing it against Trifolium incarnatum (T. incarnatum) and Lolium perenne (L. perenne). The content of malondialdehyde (MDA), percentage of water loss, electrolyte leakage, and the fluorescence of treated leaves by cinnamon EO were determined in order to understand the physiological and biochemical responses. In addition, transmission electron microscopy (TEM) was used to study the effect of cinnamon EO on cellular organelles in different tissues of T. incarnatum leaves. Results showed that cinnamon EO quickly induced oxidative stress in treated leaves by increasing MDA content, impacting membrane integrity and causing water loss. TEM observations confirmed the cell desiccation by cellular plasmolysis and showed an alteration of the membrane integrity and chloroplast damages. Moreover, Raman analysis confirms the disturbance of the plant metabolism by the disappearance of some scattering bands which correspond to primary metabolites. Through our finding, we confirm that cinnamon essential oil (EO) could be proposed in the future as a potential bioherbicide and a suitable source of natural phytotoxic compounds with a multisite action on weeds. Full article
(This article belongs to the Special Issue Biopesticides for Plant Protection)
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Graphical abstract

Graphical abstract
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<p>Phytotoxic effect of cinnamon EO after three days on <span class="html-italic">T. incarnatum</span> (<b>upper</b>) and <span class="html-italic">L. perenne</span> (<b>lower</b>). From left to right: untreated ((<b>A</b>) or (<b>A1</b>)); treated plant with 3% EO ((<b>B</b>) or (<b>B1</b>)); treated plant with 6% EO ((<b>C</b>) or (<b>C1</b>)).</p>
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<p>Percentage of water loss of leaves of <span class="html-italic">T. incarnatum</span> (gray) and <span class="html-italic">L. perenne</span> (blue) treated by cinnamon EO at 3% and 6% after 5 h. Glyphosate at 7 g L<sup>−1</sup> was used as positive control and Tween 20 (1%) as negative control for emulsion of cinnamon EO. <sup>a,b</sup> The letters above the histogram bars represent statistical groups. Values in a column followed by the same letter are not significantly different at <span class="html-italic">p</span> &lt; 0.05, as established by Tukey’s test, indicating that these groups do not differ statistically from one another.</p>
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<p>Percentage of water loss of leaves of <span class="html-italic">T. incarnatum</span> (gray) and <span class="html-italic">L. perenne</span> (blue) treated by cinnamon EO at 3% and 6% after 3 days. Glyphosate at 7 g L<sup>−1</sup> was used as positive control and Tween 20 (1%) as negative control for emulsion of cinnamon EO. <sup>a–c</sup> The letters above the histogram bars represent statistical groups. Values in a column followed by the same letter are not significantly different at <span class="html-italic">p</span> &lt; 0.05, as established by Tukey’s test, indicating that these groups do not differ statistically from one another.</p>
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<p>Membrane integrity of <span class="html-italic">T. incarnatum</span> (gray) and <span class="html-italic">L. perenne</span> (blue) after 5 h of treatment with cinnamon EO 3% and 6%. Glyphosate at 7 g L<sup>−1</sup> was used as positive control and Tween 20 (1%) as negative control for emulsion of cinnamon EO. <sup>a–c</sup> The letters above the histogram bars represent statistical groups. Values in a column followed by the same letter are not significantly different at <span class="html-italic">p</span> &lt; 0.05, as established by Tukey’s test, indicating that these groups do not differ statistically from one another.</p>
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<p>Content of MDA In <span class="html-italic">T. incarnatum</span> (gray) and <span class="html-italic">L. perenne</span> (blue) after 5 h of treatment with cinnamon EO at 3% and 6%. Glyphosate at 7 g L<sup>−1</sup> was used as positive control and Tween 20 (1%) as negative control. <sup>a–d</sup> The letters above the histogram bars represent statistical groups. Values in a column followed by the same letter are not significantly different at <span class="html-italic">p</span> &lt; 0.05, as established by Tukey’s test, indicating that these groups do not differ statistically from one another.</p>
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<p>Chlorophyll fluorescence of leaves of <span class="html-italic">T. incarnatum</span> (gray) and <span class="html-italic">L. perenne</span> (blue) after 15 min of treatment with cinnamon EO 3% and 6%. Glyphosate at 7 g L<sup>−1</sup> was used as positive control and Tween 20 (1%) as negative control for emulsion of cinnamon EO. <sup>a–c</sup> The letters above the histogram bars represent statistical groups. Values in a column followed by the same letter are not significantly different at <span class="html-italic">p</span> &lt; 0.05, as established by Tukey’s test, indicating that these groups do not differ statistically from one another.</p>
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<p>Chlorophyll fluorescence of leaves of <span class="html-italic">T. incarnatum</span> (gray) and <span class="html-italic">L. perenne</span> (blue) after 3 days of treatment with cinnamon EO 3% and 6%. Glyphosate at 7 g L<sup>−1</sup> was used as positive control and Tween 20 (1%) as negative control for emulsion of cinnamon EO. <sup>a–c</sup> The letters above the histogram bars represent statistical groups. Values in a column followed by the same letter are not significantly different at <span class="html-italic">p</span> &lt; 0.05, as established by Tukey’s test, indicating that these groups do not differ statistically from one another.</p>
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<p>TEM images (600 × 200 µm) showing intact cells of untreated leaves of <span class="html-italic">T. incarnatum</span> containing Tween 1% (<b>A</b>) and the effect of cinnamon EO at 3% on the ultrastructure cells after 30 min of contact (<b>B</b>).</p>
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<p>Raman spectra profile of untreated leaves (yellow) and stems (light blue) and treated leaves (red) and stems (dark blue) of <span class="html-italic">T. incarnatum</span> by cinnamon EO after 1 day.</p>
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18 pages, 4563 KiB  
Article
Exserohilum rostratum-Mediated Synthesis of Silver Nanoparticles: A Case Study on Their Bioherbicidal Activity Against Leptochloa chinensis (L.) Nees
by Ashrit Gulfraz, Yuquan Yuan, Qing Bu, Muhammad Shafiq, Zhiqiu Huang, Mingwei Li, Zhaoxia Dong, Jing An and Yong Chen
Agronomy 2024, 14(12), 2784; https://doi.org/10.3390/agronomy14122784 - 23 Nov 2024
Viewed by 497
Abstract
The interdisciplinary progress in nanotechnology has yielded environmentally friendly and cost-effective strategies to enhance bioherbicidal efficacy. This study presents the biosynthesis of silver nanoparticles (M-AgNPs) using the fungus Exserohilum rostratum, specifically targeting the Leptochloa chinensis weed in paddy fields. The M-AgNPs were [...] Read more.
The interdisciplinary progress in nanotechnology has yielded environmentally friendly and cost-effective strategies to enhance bioherbicidal efficacy. This study presents the biosynthesis of silver nanoparticles (M-AgNPs) using the fungus Exserohilum rostratum, specifically targeting the Leptochloa chinensis weed in paddy fields. The M-AgNPs were characterized with an aqueous solution size of 107.9 nm and a zeta potential of −24.0 ± 0.20 mV, and their properties were analyzed by UV-Vis spectrophotometry, transmission electron microscopy (TEM), scanning electron microscopy (SEM), X-ray diffraction (XRD), and Fourier-transform infrared spectroscopy (FTIR). The application of M-AgNP suspension at different concentrations of 70 µg∙mL−1, 80 µg∙mL−1, and 100 µg∙mL−1 to L. chinensis at the 3–4 leaf stage resulted in significant herbicidal effects. These nanoparticles induced oxidative stress and significantly reduced the activities of peroxidase, catalase, and superoxide dismutase in the weed seedlings. Meanwhile, M-AgNP treatments significantly increased the activity of cell wall-degrading enzymes, including polygalacturonase and cellulase, in L. chinensis leaves and caused organelle damage in plant leaf cells. Safety assessments showed no significant impact on rice growth after treatment with M-AgNP3 (100 µg∙mL−1) suspension. Our results suggest that M-AgNPs represent a sustainable and eco-friendly approach to weed control that is compatible with rice cultivation, thus supporting the adoption of green agricultural practices. Full article
(This article belongs to the Special Issue Free from Herbicides: Ecological Weed Control)
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Figure 1

Figure 1
<p>Characterization of mycosynthesized silver nanoparticles (M-AgNPs). (<b>A</b>) Particle size distribution measured by dynamic light scattering (DLS); (<b>B</b>) zeta potential; (<b>C</b>) UV-Vis absorption spectrum; (<b>D</b>) morphological analysis by transmission electron microscopy (TEM); (<b>E</b>) functional group identification by Fourier-transform infrared spectroscopy (FTIR); (<b>F</b>) surface morphology examination by scanning electron microscopy (SEM); (<b>G</b>) X-ray diffraction (XRD) pattern simulation; (<b>H</b>) energy-dispersive X-ray (EDX) spectrum with the area of analysis indicated; (<b>I</b>) elemental composition analysis of M-AgNPs.</p>
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<p>Herbicidal effects of M-AgNPs on <span class="html-italic">L. chinensis</span> at the 4-leaf stage. Effects of different concentrations of M-AgNPs on the (<b>A</b>) growth of seedlings; (<b>B</b>) detached leaf; (<b>C</b>) fresh weight; (<b>D</b>) fresh weight control efficiency; and (<b>E</b>) SPAD value of leaf. CK: healthy plant; +ive CK: <span class="html-italic">Exserohilum rostratum</span> filtrate; M-AgNP<sub>1</sub>, M-AgNP<sub>2</sub>, and M-AgNP<sub>3</sub>: treatment groups with 70 µg∙mL<sup>−1</sup>, 80 µg∙mL<sup>−1</sup>, and 100 µg∙mL<sup>−1</sup> of M-AgNPs, respectively. Statistical analysis was performed using the one-way analysis of variance (ANOVA) based on Duncan’s test. Different lowercase letters denote significant differences among treatments (<span class="html-italic">p</span> &lt; 0.05). Error bars represent the standard error of the mean.</p>
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<p>M-AgNPs caused oxidative stress and decreased antioxidant enzyme activities in <span class="html-italic">L. chinensis</span> leaves. Effect of M-AgNPs on (<b>A</b>) malondialdehyde (MDA); (<b>B</b>) hydrogen peroxide (H<sub>2</sub>O<sub>2</sub>) content; (<b>C</b>) electrolyte leakage (EL); (<b>D</b>) superoxide dismutase (SOD); (<b>E</b>) catalase (CAT); and (<b>F</b>) peroxidase (POD) activity. CK: healthy plant; +ive CK: <span class="html-italic">Exserohilum rostratum</span> filtrate; M-AgNP<sub>1</sub>, M-AgNP<sub>2</sub>, and M-AgNP<sub>3</sub>: treatment groups with 70 µg∙mL<sup>−1</sup>, 80 µg∙mL<sup>−1</sup>, and 100 µg∙mL<sup>−1</sup> of M-AgNPs, respectively. Statistical analysis was performed using the one-way analysis of variance (ANOVA) based on Duncan’s test. Different lowercase letters denote significant differences among treatments (<span class="html-italic">p</span> &lt; 0.05). Error bars represent the standard error of the mean.</p>
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<p>M-AgNPs modulated the activities of cell wall-degrading enzymes in the leaves of <span class="html-italic">L. chinensis</span>. (<b>A</b>) Polygalacturonase (PG); (<b>B</b>) cellulase (CX); (<b>C</b>) polymethyl-galacturonase (PMG); and (<b>D</b>) β-glucuronidase (βG). +ive CK: <span class="html-italic">Exserohilum rostratum</span> filtrate; M-AgNP<sub>1</sub>, M-AgNP<sub>2</sub>, and M-AgNP<sub>3</sub>: treatment groups with 70 µg∙mL<sup>−1</sup>, 80 µg∙mL<sup>−1</sup>, and 100 µg∙mL<sup>−1</sup> of M-AgNPs, respectively. Statistical analysis was performed using the one-way analysis of variance (ANOVA) based on Duncan’s test. Different lowercase letters denote significant differences among treatments (<span class="html-italic">p</span> &lt; 0.05). Error bars represent the standard error of the mean.</p>
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<p>M-AgNPs damaged the subcellular structure of leaves in <span class="html-italic">L. chinensis</span>. (<b>A</b>–<b>C</b>) Cell wall and vacuole; (<b>D</b>–<b>F</b>) chloroplast; and (<b>G</b>–<b>I</b>) mitochondria of CK, <span class="html-italic">E. rostratum</span> (100 µg∙mL<sup>−1</sup>), and M-AgNP<sub>3</sub> (100 µg∙mL<sup>−1</sup>), respectively. The red arrow indicates the abnormal organelles. The circle denotes the damage in the cell wall (CW), mitochondria (M), vacuole (V), and chloroplast (Ch).</p>
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<p>Safety evaluation of M-AgNPs on rice plants. The effects of different concentrations of M-AgNPs on the (<b>A</b>) growth of seedlings; (<b>B</b>) plant height; (<b>C</b>) SPAD value of leaf; (<b>D</b>) shoot fresh weight; and (<b>E</b>) root fresh weight. CK: healthy plant; +ive CK: <span class="html-italic">Exserohilum rostratum</span> filtrate; M-AgNP<sub>1</sub>, M-AgNP<sub>2</sub>, and M-AgNP<sub>3</sub>: 70 µg∙mL<sup>−1</sup>, 80 µg∙mL<sup>−1</sup>, and 100 µg∙mL<sup>−1</sup> of M-AgNPs, respectively. The data were analyzed using the one-way analysis of variance (ANOVA) based on Duncan’s test. Data with different lowercase letters indicate significant differences (<span class="html-italic">p</span> &lt; 0.05). Error bars indicate standard error.</p>
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<p>Mechanism of mycosynthesis of silver nanoparticle by <span class="html-italic">E. rostratum</span> against <span class="html-italic">L. chinensis</span>. M-AgNPs induced excessive accumulation of ROS by suppressing the activity of antioxidant enzymes and disrupting plant cell structure by enhancing the activities of cell wall-degrading enzymes, polygalacturonase (PG) and cellulase (CX), resulting in leaf necrosis of <span class="html-italic">L. chinensis</span>. An upward arrow indicates an increase, while a downward arrow signifies a decrease.</p>
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15 pages, 3728 KiB  
Article
Phytotoxic Activity of Myrciaria cuspidata O. Berg, a Dominant Myrtaceae Woodland Tree Native of Brazil
by Yve V. S. Magedans, Fábio A. Antonelo, Kelly C. S. Rodrigues-Honda, Paula O. S. Ribeiro, Maria E. Alves-Áquila and Arthur G. Fett-Neto
Plants 2024, 13(23), 3293; https://doi.org/10.3390/plants13233293 - 23 Nov 2024
Viewed by 449
Abstract
Limited phytodiversity and regeneration rates occur in some of the southern Brazilian formations known as the Myrtacean Woodlands. Data on phytotoxicity, chemical composition, and allelopathic potential of Myrciaria cuspidata O. Berg, a dominant species in such woodlands, is missing. In this study, both [...] Read more.
Limited phytodiversity and regeneration rates occur in some of the southern Brazilian formations known as the Myrtacean Woodlands. Data on phytotoxicity, chemical composition, and allelopathic potential of Myrciaria cuspidata O. Berg, a dominant species in such woodlands, is missing. In this study, both the chemical composition and phytotoxic activity of an aqueous extract (AE) from M. cuspidata leaves were investigated. Target plants were the model species Lactuca sativa L. and the weed Bidens pilosa L. Germination rates, seedling growth, and phenotypic responses of target species were assessed following AE application to determine the inhibitory capacity of M. cuspidata leaf extract. Germination of L. sativa was reduced and delayed in the presence of AE. Strong inhibition of germination was recorded in B. pilosa achenes under the same treatment. Pre-germinated seedlings of L. sativa were essentially not affected by AE, whereas those of the weed showed some negative developmental responses. Overall, inhibitory responses were consistent both in vitro and in soil substrate. Detrimental effects were most apparent in roots and included tip darkening and growth anomalies often preceded by loss of mitochondrial viability. AE proved rich in phytotoxic phenolic compounds including quercetin, gallic and tannic acid. To sum up, AE shows potential as an environmentally friendly pre-emergence bioherbicide of low residual effect and minor environmental impact. Experimental data in laboratory conditions were consistent with potential allelopathic activity of this tree, as inferred from field observations of dominance in the Myrtaceae Woodlands. Full article
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Figure 1
<p>General view of a portion of Myrtacean Woodland, showing the scarce understory vegetation (<b>A</b>). Aspect of fruiting branch of <span class="html-italic">M. cuspidata</span> (<b>B</b>). Photo credit: Kelly Cristine Rodrigues-Honda.</p>
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<p>Chromatogram of <span class="html-italic">Myrcyaria cuspidata</span> leaf aqueous extract at 0.04 g/mL (dark blue) and authentic tannic acid at 100 µg/mL (light blue). Detection set at 280 nm.</p>
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<p>Germination of <span class="html-italic">L. sativa</span> (<b>A</b>,<b>C</b>) and <span class="html-italic">B. pilosa</span> (<b>B</b>,<b>D</b>) achenes in Petri dishes containing water (control) or <span class="html-italic">M. cuspidata</span> leaf aqueous extract at 4% (<span class="html-italic">w</span>/<span class="html-italic">v</span>). Germination time course was recorded at 24 h intervals. Darkening of germinated <span class="html-italic">L. sativa</span> seedlings roots whose achenes were in the presence of leaf extract is visible (red circle).</p>
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<p>Growth of <span class="html-italic">B. pilosa</span> and <span class="html-italic">L. sativa</span> in Petri dishes. Pre-germinated seedlings were grown in <span class="html-italic">M. cuspidata</span> leaf aqueous extract at 4% (<span class="html-italic">w</span>/<span class="html-italic">v</span>) or water (control). Data were obtained at the end of the experiments (6 days for <span class="html-italic">L. sativa</span> and 12 days for <span class="html-italic">B. pilosa</span>). Radicle and hypocotyl elongation (<b>A</b>,<b>E</b>), comparisons valid within each organ), fresh weight (<b>B</b>,<b>F</b>), dry weight (<b>C</b>,<b>G</b>), total seedling length (<b>D</b>,<b>H</b>). Control and treated groups were compared using a <span class="html-italic">t</span>-test (<span class="html-italic">p</span> ≤ 0.05). Bars not sharing a letter are significantly different.</p>
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<p>Germination and growth of <span class="html-italic">L. sativa</span> on the solid substrate. <span class="html-italic">M. cuspidata</span> leaf aqueous extract 4% (<span class="html-italic">w</span>/<span class="html-italic">v</span>) or water (control) sprayed twice—at day 0 and 48 h. (<b>A</b>)—Germination time course recorded at 24 h intervals; (<b>B</b>)—Radicle and hypocotyl elongation (comparisons valid within each organ); (<b>C</b>)—Germination percentage in soil; (<b>D</b>)—total length of plants; (<b>E</b>)—fresh weight; (<b>F</b>)—dry weight. Control and treated groups were compared using <span class="html-italic">t</span>-test (<span class="html-italic">p</span> ≤ 0.05). Bars not sharing a letter are significantly different.</p>
Full article ">Figure 6
<p>Germination and growth of <span class="html-italic">B. pilosa</span> on solid substrate. <span class="html-italic">M. cuspidata</span> leaf aqueous extract 4% (<span class="html-italic">w</span>/<span class="html-italic">v</span>) or water (control) were sprayed in plants twice—at day 0 and 48 h. (<b>A</b>)—Germination time course recorded at 24 h intervals; (<b>B</b>)—Radicle and hypocotyl elongation (comparisons valid within each organ); (<b>C</b>)—Germination percentage in soil; (<b>D</b>)—Fresh weight and (<b>E</b>)—Dry weight; (<b>F</b>)—Total length of plants. Control and treated groups were compared using a <span class="html-italic">t</span>-test (<span class="html-italic">p</span> ≤ 0.05). Bars not sharing a letter are significantly different.</p>
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15 pages, 4118 KiB  
Article
Antibacterial, Herbicidal, and Plant Growth-Promoting Properties of Streptomyces sp. STD57 from the Rhizosphere of Adenophora stricta
by Dan He, Congting Gao, Shen Zhao, Hongmin Chen, Peng Li, Xishan Yang, Deping Li, Tingting Zhao, Hong Jiang and Chongxi Liu
Microorganisms 2024, 12(11), 2245; https://doi.org/10.3390/microorganisms12112245 - 6 Nov 2024
Viewed by 737
Abstract
Bacterial wilt triggered by the soil-borne pathogenic bacterium Ralstonia solanacearum is one of the most serious diseases in tomato plants, leading to huge economic losses worldwide. Biological control is considered an environmentally friendly and sustainable way to manage soil-borne diseases. In this study, [...] Read more.
Bacterial wilt triggered by the soil-borne pathogenic bacterium Ralstonia solanacearum is one of the most serious diseases in tomato plants, leading to huge economic losses worldwide. Biological control is considered an environmentally friendly and sustainable way to manage soil-borne diseases. In this study, Streptomyces sp. STD57 isolated from the rhizosphere of Adenophora stricta showed strong antibacterial activity against R. solanacearum. Pot experiments showed that strain STD57 exhibited a significant biocontrol effect (81.7%) on tomato bacterial wilt in the greenhouse environment. Furthermore, strain STD57 could inhibit the growth of weeds (Amaranthus retroflexus, Portulaca oleracea, and Echinochloa crusgalli) but promote the growth of crops (wheat, rice, and tomato). The plant growth-promoting substance was identified as indoleacetic acid (IAA) by high-pressure liquid chromatography–mass spectrometry and genome analysis. Coarse separation of the fermented extracts revealed that the antibacterial and herbicidal substances were mainly in the fermentation supernatant and belonged to different products. These findings suggested that strain STD57 may be a potential biocontrol and bioherbicide agent useful in agriculture. Full article
(This article belongs to the Section Microbial Biotechnology)
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<p>Characterization of strain STD57 with antagonistic activity against <span class="html-italic">R. solanacearum</span>. (<b>A</b>) The antagonistic activity of STD57 against <span class="html-italic">R. solanacearum</span>. (<b>B</b>) Colony morphology of STD57 grown on ISP3 medium for 2 weeks. (<b>C</b>) Scanning electron micrograph of STD57 grown on ISP3 agar for 2 weeks. Scale bar, 5 μm. (<b>D</b>) Phylogenetic tree constructed based on 16S rRNA gene sequences showing the relationship of STD57 with related taxa. Only bootstrap values greater than 50% (percentages of 1000 replications) are shown. Scale bar: 0.002 nucleotide substitutions per site.</p>
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<p>Effect of strain STD57 on tomato plants infected with <span class="html-italic">R. solanacearum</span>. (<b>A</b>) Disease symptoms of tomato bacterial wilt in the potted tomato plants inoculated with <span class="html-italic">R. solanacearum</span> and treated with varying spore concentrations of STD57. (<b>B</b>,<b>C</b>) Disease index and control efficacy were assessed 2 weeks after inoculation with <span class="html-italic">R. solanacearum</span> in tomato plants treated with STD57. Data with different lowercase letters denote significant differences at the 0.05 probability level.</p>
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<p>Preemergence inhibition activities of strain STD57 at different spore concentrations on weeds. (<b>A</b>) Inhibition effects of STD57 at different spore concentrations on different weeds. (<b>B</b>) Inhibition rates of STD57 at different spore concentrations on shoot and root length of <span class="html-italic">A. retroflexus</span>. (<b>C</b>) Inhibition rates of STD57 at different spore concentrations on the shoot and root length of <span class="html-italic">P. oleracea</span>. (<b>D</b>) Inhibition rates of STD57 at different spore concentrations on the shoot and root length of <span class="html-italic">E. crusgalli</span>. *** <span class="html-italic">p</span> &lt; 0.001.</p>
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<p>Postemergence inhibition activities of strain STD57 at different spore concentrations on weeds after mixing spores with soil. (<b>A</b>) Inhibiting effects of STD57 at different spore concentrations on <span class="html-italic">A. retroflexus</span>. (<b>B</b>,<b>C</b>) Inhibition rates of STD57 at different spore concentrations on fresh and dry weight of <span class="html-italic">A. retroflexus</span>. (<b>D</b>) Inhibiting effects of STD57 at different spore concentrations on <span class="html-italic">E. crusgalli</span>. (<b>E</b>,<b>F</b>) Inhibition rates of STD57 at different spore concentrations on fresh and dry weight of <span class="html-italic">E. crusgalli</span>. *** <span class="html-italic">p</span> &lt; 0.001.</p>
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<p>Preemergence growth-promoting activities of strain STD57 at different spore concentrations on crops. (<b>A</b>) Growth-promoting effects of STD57 at different spore concentrations on different crops. (<b>B</b>) Growth-promoting rates of STD57 at different spore concentrations on shoot and root length of wheat. (<b>C</b>) Growth-promoting rates of STD57 at different spore concentrations on the shoot and root length of rice. (<b>D</b>) Growth-promoting rates of STD57 at different spore concentrations on the shoot and root lengths of tomato. ns, no significance; * <span class="html-italic">p</span> &lt; 0.05; ** <span class="html-italic">p</span> &lt; 0.01; *** <span class="html-italic">p</span> &lt; 0.001.</p>
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<p>Postemergence growth-promoting activities of strain STD57 at different spore concentrations on weeds by spore mixing with soil. (<b>A</b>) Growth-promoting effects of STD57 at different spore concentrations on wheat. (<b>B</b>,<b>C</b>) Growth-promoting rates of STD57 at different spore concentrations on fresh and dry weight of wheat. (<b>D</b>) Growth-promoting effects of STD57 at different spore concentrations on tomato. (<b>E</b>,<b>F</b>) Growth-promoting rates of STD57 at different spore concentrations on fresh and dry weight of tomato. ns, no significance; ** <span class="html-italic">p</span> &lt; 0.01; *** <span class="html-italic">p</span> &lt; 0.001.</p>
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<p>LC-MS and HPLC analysis of extracts from STD57. (<b>A</b>) LC-MS analysis. (<b>B</b>) HPLC analysis.</p>
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13 pages, 932 KiB  
Article
Effect of Bio-Herbicide Application on Durum Wheat Quality: From Grain to Bread Passing through Wholemeal Flour
by Umberto Anastasi, Alfio Spina, Paolo Guarnaccia, Michele Canale, Rosalia Sanfilippo, Silvia Zingale, Giorgio Spina, Andrea Comparato and Alessandra Carrubba
Plants 2024, 13(20), 2859; https://doi.org/10.3390/plants13202859 - 12 Oct 2024
Viewed by 917
Abstract
Using plant extracts to replace traditional chemical herbicides plays an essential role in sustainable agriculture. The present work evaluated the quality of durum wheat cv Valbelice in two years (2014 and 2016) using plant aqueous extracts of sumac (Rhus coriaria L.) and [...] Read more.
Using plant extracts to replace traditional chemical herbicides plays an essential role in sustainable agriculture. The present work evaluated the quality of durum wheat cv Valbelice in two years (2014 and 2016) using plant aqueous extracts of sumac (Rhus coriaria L.) and mugwort (Artemisia arborescens L.) as bio-herbicides on the main quality characteristics of durum wheat. The untreated, water-treated, and chemically treated durum wheat products were also analyzed as controls. Following the official methodologies, grain commercial analyses and defects of the kernels were determined. The main chemical and technological features were determined on the wholemeal flour: proteins, dry matter, dry gluten, gluten index, colorimetric parameters, mixograph, falling number, and sedimentation test in SDS. An experimental bread-making test was performed, and the main parameters were detected on the breads: bread volume, weight, moisture, porosity, hardness, and colorimetric parameters on crumb and crust. Within the two years, grain commercial analyses of the total five treatments showed no statistically significant differences concerning test weight (range 75.47–84.33 kg/hL) and thousand kernel weight (range 26.58–35.36 kg/hL). Differently, significant differences were observed in terms of kernel defects, particularly starchy kernels, black pointed kernels, and shrunken kernels, mainly due to the year factor. Analyses on the whole-grain flours showed significant differences. This affected dry gluten content (7.35% to 16.40%) and gluten quality (gluten index from 6.44 to 45.81). Mixograph results for mixing time ranged from 1.90 min to 3.15 min, whilst a peak dough ranged from 6.83 mm to 9.85 mm, showing, in both cases, statistically significant differences between treatments. The falling number showed lower values during the first year (on average 305 s) and then increased in the second year (on average 407 s). The sedimentation test showed no statistically significant differences, ranging from 27.75 mm to 34.00 mm. Regarding the bread produced, statistically significant year-related differences were observed for the parameters loaf volume during the first year (on average 298.75 cm3) and then increased in the second year (on average 417.33 cm3). Weight range 136.85 g to 145.18 g and moisture range 32.50 g/100 g to 39.51 g/100 g. Hardness range 8.65 N to 12.75 N and porosity (range 5.00 to 8.00) were closely related to the type of treatment. Finally, the color of flour and bread appeared to be not statistically significantly affected by treatment type. From a perspective of environmental and economic sustainability, the use of plant extracts with a bio-herbicidal function could replace traditional chemical herbicides. Full article
(This article belongs to the Special Issue Advanced in Cereal Science and Cereal Quality, Volume 2)
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<p>Experimental groups of bread loaves baked using flour from grains of wheat submitted to the different treatments: water-treated, untreated, chemically treated, treated with plant aqueous extracts of mugwort (<span class="html-italic">Artemisia arborescens</span> L.) and of sumac (<span class="html-italic">Rhus coriaria</span> L.) (year of research 2016).</p>
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<p>Principal component analysis (PCA) biplot, defined by the first two principal components. Vectors represent the loadings of the physical, chemical, and technological quality characteristics of grain, flours, doughs, and breads obtained in 2014 and 2016 from five treatments, including plant extracts from <span class="html-italic">Rhus coriaria</span> L. and <span class="html-italic">Artemisia arborescens</span> L., no treatment, chemical treatment, and treatment with only water.</p>
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20 pages, 2816 KiB  
Article
Phytotoxic Activity of Sesquiterpene Lactones-Enriched Fractions from Cynara cardunculus L. Leaves on Pre-Emergent and Post-Emergent Weed Species and Putative Mode of Action
by Daniela Rosa, Carlos Rial, Teresa Brás, Rosa M. Varela, Francisco A. Macías and Maria F. Duarte
Plants 2024, 13(19), 2758; https://doi.org/10.3390/plants13192758 - 1 Oct 2024
Viewed by 684
Abstract
Sesquiterpene lactones (SLs) are compounds that are highly produced in Cynara cardunculus leaves, known for their phytotoxic activity. This study aims to assess SL-enriched fractions’ (cynaropicrin, aguerin B, and grosheimin) phytotoxic potentials and putative modes of action, compared to an initial extract, using [...] Read more.
Sesquiterpene lactones (SLs) are compounds that are highly produced in Cynara cardunculus leaves, known for their phytotoxic activity. This study aims to assess SL-enriched fractions’ (cynaropicrin, aguerin B, and grosheimin) phytotoxic potentials and putative modes of action, compared to an initial extract, using two approaches: first, against a panel of nine weed species in pre-emergence, and then on Portulaca oleracea L.’s post-emergency stage. The SL-enriched fractions demonstrated greater phytotoxic activity when compared with the C. cardunculus leaf initial extract. The SL-enriched fractions had higher activity at root growth inhibition over the panel tested, doubling the activity in five of them at 800 ppm. Regarding the post-emergence bioassay, the SL-enriched fractions had a higher influence on the plants’ growth inhibition (67% at 800 ppm). The SL-effects on the plants’ metabolisms were evidenced. The total chlorophyll content was reduced by 65% at 800 ppm. Oxidative stress induction was observed because of the enhancement in MDA levels at 800 ppm compared to control (52%) and the decrease in SOD-specific activity from 4.20 U/mg protein (400 ppm) to 1.74 U/mg protein (800 ppm). The phytotoxic effects of the SL-enriched fractions suggest that they could be used for a future bioherbicide development. Full article
(This article belongs to the Special Issue Phytochemical and Biological Activity of Plant Extracts)
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<p>Effects of the initial extract (IE), SL-enriched fractions (F1–F4), and herbicide (HBC) on the growth of <span class="html-italic">Trifolium repens</span> roots and shoots. The values are expressed as the percentage difference from the control, and Welch’s test was used for statistical analysis. Letters <span class="html-italic">a</span> and <span class="html-italic">b</span> indicate significance for <span class="html-italic">p</span> &lt; 0.01 and 0.01 &lt; <span class="html-italic">p</span> &lt; 0.05, respectively.</p>
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<p>Effects of the initial extract (IE), SL-enriched fractions (F1–F4), and herbicide (HBC) on the growth of <span class="html-italic">Plantago lanceolata</span> roots and shoots. The values are expressed as the percentage difference from the control, and Welch’s test was used for statistical analysis. Letters <span class="html-italic">a</span> and <span class="html-italic">b</span> indicate significance for <span class="html-italic">p</span> &lt; 0.01 and 0.01 &lt; <span class="html-italic">p</span> &lt; 0.05, respectively.</p>
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<p>Effects of the initial extract (IE), SL-enriched fractions (F1–F4), and herbicide (HBC) on the growth of <span class="html-italic">Dactylis glomerata</span> roots and shoots. The values are expressed as the percentage difference from the control, and Welch’s test was used for statistical analysis. Letters <span class="html-italic">a</span> and <span class="html-italic">b</span> indicate significance for <span class="html-italic">p</span> &lt; 0.01 and 0.01 &lt; <span class="html-italic">p</span> &lt; 0.05, respectively.</p>
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<p>Effects of the initial extract (IE), SL-enriched fractions (F1–F4), and herbicide (HBC) on the growth of <span class="html-italic">Phalaris arundinacea</span> roots and shoots. The values are expressed as the percentage difference from the control, and Welch’s test was used for statistical analysis. Letters <span class="html-italic">a</span> and <span class="html-italic">b</span> indicate significance for <span class="html-italic">p</span> &lt; 0.01 and 0.01 &lt; <span class="html-italic">p</span> &lt; 0.05, respectively.</p>
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<p>Effects of the initial extract (IE), SL-enriched fractions (F1–F4), and herbicide (HBC) on the growth of <span class="html-italic">Lolium rigidum</span> roots and shoots. The values are expressed as the percentage difference from the control, and Welch’s test was used for statistical analysis. Letters <span class="html-italic">a</span> and <span class="html-italic">b</span> indicate significance for <span class="html-italic">p</span> &lt; 0.01 and 0.01 &lt; <span class="html-italic">p</span> &lt; 0.05, respectively.</p>
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<p>Effects of the initial extract (IE), SL-enriched fractions (F1–F4), and herbicide (HBC) on the growth of <span class="html-italic">Festuca rubra rubra</span> roots and shoots. The values are expressed as the percentage difference from the control, and Welch’s test was used for statistical analysis. Letters <span class="html-italic">a</span> and <span class="html-italic">b</span> indicate significance for <span class="html-italic">p</span> &lt; 0.01 and 0.01 &lt; <span class="html-italic">p</span> &lt; 0.05, respectively.</p>
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<p>Effects of the initial extract (IE), SL-enriched fractions (F1–F4), and herbicide (HBC) on the growth of <span class="html-italic">Daucus carota</span> roots and shoots. The values are expressed as the percentage difference from the control, and Welch’s test was used for statistical analysis. Letters <span class="html-italic">a</span> and <span class="html-italic">b</span> indicate significance for <span class="html-italic">p</span> &lt; 0.01 and 0.01 &lt; <span class="html-italic">p</span> &lt; 0.05, respectively.</p>
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<p>Effects of the initial extract (IE), SL-enriched fractions (F1–F4), and herbicide (HBC) on the growth of <span class="html-italic">Matricaria recutita</span> roots and shoots. The values are expressed as the percentage difference from the control, and Welch’s test was used for statistical analysis. Letters <span class="html-italic">a</span> and <span class="html-italic">b</span> indicate significance for <span class="html-italic">p</span> &lt; 0.01 and 0.01 &lt; <span class="html-italic">p</span> &lt; 0.05, respectively.</p>
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<p>Effects of the initial extract (IE), SL-enriched fractions (F1–F4), and herbicide (HBC) on the growth of <span class="html-italic">Trifolium incarnatum</span> roots and shoots. The values are expressed as the percentage difference from the control, and Welch’s test was used for statistical analysis. Letters <span class="html-italic">a</span> and <span class="html-italic">b</span> indicate significance for <span class="html-italic">p</span> &lt; 0.01 and 0.01 &lt; <span class="html-italic">p</span> &lt; 0.05, respectively.</p>
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<p>Effects of the initial extract (IE), SL-enriched fractions (F1–F4), and herbicide (HBC) on the growth of <span class="html-italic">Portulaca oleracea</span> roots and shoots. The values are expressed as the percentage difference from the control, and Welch’s test was used for statistical analysis. Letters <span class="html-italic">a</span> and <span class="html-italic">b</span> indicate significance for <span class="html-italic">p</span> &lt; 0.01 and 0.01 &lt; <span class="html-italic">p</span> &lt; 0.05, respectively. (Adapted from [<a href="#B17-plants-13-02758" class="html-bibr">17</a>]).</p>
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<p>Cluster analysis of the phytotoxic effects of initial extract (IE), SL-enriched fractions (F1–F4), and the herbicide Stomp<sup>®</sup>Aqua (HBC) (positive control) on <span class="html-italic">Portulaca oleracea</span>, <span class="html-italic">Plantago lanceolata</span>, <span class="html-italic">Phalaris arundinacea</span>, <span class="html-italic">Trifolium repens</span>, <span class="html-italic">Trifolium incarnatum</span>, <span class="html-italic">Matricaria recutita</span>, <span class="html-italic">Daucus carota</span>, <span class="html-italic">Festuca rubra rubra</span>, <span class="html-italic">Lolium rigidum</span>, and <span class="html-italic">Dactylis glomerata</span> root and shoot growth inhibition.</p>
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<p>Cluster analysis of the susceptibility of weed species exposed to the SL-enriched fractions: (<b>a</b>) root growth; (<b>b</b>) shoot growth; and (<b>c</b>) root and shoot growth combination.</p>
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<p>Values for <span class="html-italic">P. oleracea</span> DW determination at each treatment: IE—initial extract; SL-EF: SL-enriched fractions; HBC—herbicide (positive control). The values are expressed as percentage difference from control. Letters indicate significance between treatments and concentrations for <span class="html-italic">p</span> &lt; 0.05, where a represents the higher negative value.</p>
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<p>Total chlorophyll content in the leaf tissues of <span class="html-italic">P. oleracea</span> for each treatment: IE—initial extract; SL-EF: SL-enriched fractions; HBC—herbicide (positive control). The values are expressed as percentage difference from control. Letters indicate significance between treatments and concentrations for <span class="html-italic">p</span> &lt; 0.05, where a represents the higher negative value.</p>
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<p>SOD activity in the leaf tissues of <span class="html-italic">P. oleracea</span> in response to different treatments IE—initial extract; SL-EF: SL-enriched fractions; HBC—herbicide (positive control). The values are expressed as U/mg of protein. Letters indicate significance between treatments and concentrations for <span class="html-italic">p</span> &lt; 0.05, where a represents the higher value.</p>
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<p>MDA content in the leaf tissues of <span class="html-italic">P. oleracea</span> for each treatment: IF—initial extract; EF: SL-enriched fractions; HBC—herbicide (positive control). Values are expressed as percentage difference from control. Letters indicate significance between treatments and concentrations for <span class="html-italic">p</span> &lt; 0.05.</p>
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21 pages, 2566 KiB  
Article
Enhanced Antioxidant, Antifungal, and Herbicidal Activities through Bioconversion of Diosgenin by Yarrowia lipolytica P01a
by Christian Hernández-Guzmán, Luis G. Hernández-Montiel, Adrian E. Velázquez-Lizarraga, Leopoldo J. Ríos-González, Sergio Huerta-Ochoa, Vianey de J. Cervantes-Güicho, Thelma K. Morales-Martínez, Claudio H. Mejía-Ruíz and Ana G. Reyes
Plants 2024, 13(18), 2629; https://doi.org/10.3390/plants13182629 - 20 Sep 2024
Viewed by 1121
Abstract
This study explores the bioconversion of diosgenin by Yarrowia lipolytica P01a, focusing on enhancing the antioxidant, antifungal, and herbicidal activities of the resulting extracts. The bioconversion process, involving glycosylation and hydroxylation, produced significant amounts of protodioscin and soyasaponin I. The extracts showed [...] Read more.
This study explores the bioconversion of diosgenin by Yarrowia lipolytica P01a, focusing on enhancing the antioxidant, antifungal, and herbicidal activities of the resulting extracts. The bioconversion process, involving glycosylation and hydroxylation, produced significant amounts of protodioscin and soyasaponin I. The extracts showed superior antioxidant activity, with up to 97.02% inhibition of ABTS· radicals and 33.30% inhibition of DPPH· radicals at 1000 mg L−1 of diosgenin. Antifungal assays revealed strong inhibitory effects against Botrytis cinerea, Alternaria sp., and Aspergillus niger, with maximum inhibition rates of 67.34%, 35.63%, and 65.53%, respectively. Additionally, the herbicidal activity of the bioconverted extracts was comparable to commercial herbicides, achieving 100% inhibition of seed germination in both monocotyledonous and dicotyledonous plants. These findings suggest that the Y. lipolytica P01a-mediated bioconversion of diosgenin could provide a sustainable and eco-friendly alternative for developing natural biofungicides and bioherbicides. Full article
(This article belongs to the Special Issue Development of Biocontrol Products for Plant Diseases)
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<p>HPLC Analysis of Bioconverted Saponins by Yarrowia lipolytica P01a. The chromatogram shows the identification of protodioscin and soyasaponin I as the primary saponins produced during the bioconversion of diosgenin. Samples were analyzed at different initial concentrations of diosgenin (10–1000 mg/L). The chromatographic peaks correspond to retention times of known standards, confirming the successful bioconversion. Notably, no additional compounds were detected at higher diosgenin concentrations. This analysis highlights the glycosylation and hydroxylation modifications introduced by <span class="html-italic">Y. lipolytica</span> P01a, supporting the proposed bioconversion pathway.</p>
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<p>Proposed Metabolic Pathway for the Biosynthesis of Glycosylated Saponins by <span class="html-italic">Yarrowia lipolytica P01a</span>. The diagram illustrates the metabolic pathway for converting diosgenin into glycosylated steroidal saponins, including dioscin and protodioscin. The pathway highlights the critical role of UDP-glucosyltransferases (UGTs) in catalyzing the addition of glucose and rhamnose groups at the C-3 hydroxyl position. The pathway suggests potential enzymatic modifications involving cytochrome P450 monooxygenases (CYP450s), facilitating hydroxylation reactions. The diagram provides an overview of the bioconversion steps, producing bioactive saponins with pharmacological relevance.</p>
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<p>Antioxidant Activity of Bioconverted Diosgenin Extracts. The bar graphs depict the antioxidant activity of the bioconverted diosgenin extracts, measured as the percentage of inhibition of ABTS· (<b>A</b>), and DPPH· (<b>B</b>) radicals. Extracts were derived from different initial diosgenin concentrations (ranging from 10 to 1000 mg/L). The results show a significant increase in radical scavenging activity compared to the unmodified diosgenin. The highest levels of antioxidant activity were observed at higher diosgenin concentrations, indicating the enhanced efficacy of the bioconversion process in generating bioactive saponins. Error bars represent standard deviations from triplicate experiments. * <span class="html-italic">Means radicals</span>.</p>
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<p>Inhibition of <span class="html-italic">Botrytis</span> cinerea Growth by Bioconverted Diosgenin Extracts. The bar chart illustrates the inhibitory effects of the bioconverted extracts on the radial growth of <span class="html-italic">Botrytis cinerea</span>. Inhibition percentages are presented for different initial concentrations of diosgenin used in the bioconversion process: (<b>A</b>) from 10 to 50 mg; (<b>B</b>) from 60 to 100 mg; (<b>C</b>) from 200 to 1000 mg. The data indicate a dose-dependent inhibition, with maximum growth inhibition observed at higher diosgenin concentrations. Controls included untreated fungal cultures and cultures treated with non-bioconverted diosgenin (not included in the figure because it did not affect the fungal strains). This figure underscores the potential of bioconverted diosgenin extracts as effective antifungal agents.</p>
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<p>Inhibition of <span class="html-italic">Alternaria</span> sp. Growth by Bioconverted Diosgenin Extracts. This figure presents the effects of the bioconverted diosgenin extracts on the radial growth inhibition of <span class="html-italic">Alternaria</span> sp. The graph shows inhibition percentages across different initial diosgenin concentrations: (<b>A</b>) from 10 to 50 mg; (<b>B</b>) from 60 to 100 mg; (<b>C</b>) from 200 to 1000 mg. The extracts exhibited strong antifungal activity, particularly at higher concentrations, where the inhibition rates approached those seen with commercial antifungal agents. The controls included untreated cultures and cultures treated with unmodified diosgenin (not included in the figure because it did not affect the fungal strains). These results suggest that bioconverted diosgenin may serve as a viable natural fungicide.</p>
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<p>Inhibition of <span class="html-italic">Aspergillus niger</span> Growth by Bioconverted Diosgenin Extracts. The graph illustrates the percentage inhibition of <span class="html-italic">Aspergillus niger</span> growth by extracts obtained from the bioconversion of diosgenin at varying initial concentrations: (<b>A</b>) from 10 to 50 mg; (<b>B</b>) from 60 to 100 mg; (<b>C</b>) from 200 to 1000 mg. Although the inhibition observed was lower than that of other fungi, significant antifungal effects were still noted, particularly at mid-range concentrations. This moderate inhibitory effect highlights the differential sensitivity of fungal species to the bioconverted extracts. The controls included untreated cultures and cultures treated with unmodified diosgenin (not included in the figure because it did not affect the fungal strains). The results reinforce the importance of optimizing extract concentrations for targeted antifungal applications.</p>
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13 pages, 928 KiB  
Article
Valorization of Mediterranean Species of Thyme for the Formulation of Bio-Herbicides
by Rym Boukhalfa, Claudia Ruta, Saida Messgo-Moumene, Generosa J. Calabrese, Maria Pia Argentieri and Giuseppe De Mastro
Agronomy 2024, 14(9), 2077; https://doi.org/10.3390/agronomy14092077 - 11 Sep 2024
Cited by 1 | Viewed by 555
Abstract
This study focused on the evaluation of the phytotoxic activity of four essential oils (EOs) from the Mediterranean species of Thymus sp. pl., namely Thymus algeriensis Boiss. et Reut., T. ciliatus Desf. subspecies coloratus (Boiss. et Reut.) Batt., T. vulgaris L. ecotype Fasano [...] Read more.
This study focused on the evaluation of the phytotoxic activity of four essential oils (EOs) from the Mediterranean species of Thymus sp. pl., namely Thymus algeriensis Boiss. et Reut., T. ciliatus Desf. subspecies coloratus (Boiss. et Reut.) Batt., T. vulgaris L. ecotype Fasano and T. vulgaris cultivar L. Varico 3, to identify new biomolecules with herbicide potential. The chemical characterization of EOs was performed by GC-MS. The evaluation of the phytotoxicity of the EOs was conducted under in vitro conditions, and the inhibition of germination and seedling growth of Lolium perenne L. and Amaranthus retroflexus L. were assessed. Five concentrations (100, 250, 500, 750 and 1000 µL/100 mL) were considered. Phytochemical analysis revealed a great diversity of compounds. T. algeriensis and T. ciliatus EOs were characterized by the absence of carvacrol and a low content of thymol in T. ciliatus. On the contrary, T. vulgaris ecotype Fasano and T. vulgaris cultivar Varico 3 were characterized by an important content of p-cymene, thymol and carvacrol. All the EOs expressed a potent phytotoxic activity against the tested species. The total inhibition of seed germination and seedling growth were recorded for the highest concentrations of all the EOs. T. vulgaris ecotype Fasano expressed the most effective activity. Full article
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<p>Effect of the different treatments and doses on seed germination of <span class="html-italic">L. perenne</span> (<b>a</b>) and <span class="html-italic">A. retrofelxus</span> (<b>b</b>) after 7 days of exposure to a 100–1000 μL/100 mL range of concentrations of the four tested EOs. T1: <span class="html-italic">T. algeriensis,</span> T2: <span class="html-italic">T. ciliatus</span>, T3: <span class="html-italic">T. vulgaris</span> cultivar Varico 3, T4: <span class="html-italic">T. vulgaris</span> ecotype Fasano. Data are means of three replicates. At each dose, data followed by different letters are significantly different (<span class="html-italic">p</span> ≤ 0.05, Tukey’s test).</p>
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<p>Effect of the different treatments and doses on root elongation of <span class="html-italic">L. perenne</span> (<b>a</b>) and <span class="html-italic">A. retrofelxus</span> (<b>b</b>) seedlings after 7 days of exposure to a 100–1000 μL/100 mL range of concentrations of the four tested EOs and active compounds. T1: <span class="html-italic">T. algeriensis</span>, T2: <span class="html-italic">T. ciliatus</span>, T3: <span class="html-italic">T. vulgaris</span> cultivar Varico 3, T4: <span class="html-italic">T. vulgaris</span> ecotype Fasano. Data are means of three replicates. At each dose, data followed by different letters are significantly different (<span class="html-italic">p</span> ≤ 0.05, Tukey’s test).</p>
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<p>Effect of the different treatments and doses on shoot elongation of <span class="html-italic">L. perenne</span> seedlings after 7 days of exposure to a 100–1000 μL/100 mL range of concentrations of the four tested EOs and active compounds. T1: <span class="html-italic">T. algeriensis</span>, T2: <span class="html-italic">T. ciliatus</span>, T3: <span class="html-italic">T. vulgaris</span> cultivar Varico 3, T4: <span class="html-italic">T. vulgaris</span> ecotype Fasano. Data are means of three replicates. At each dose, data followed by different letters are significantly different (<span class="html-italic">p</span> ≤ 0.05, Tukey’s test).</p>
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29 pages, 2418 KiB  
Review
Microbial Bioherbicides Based on Cell-Free Phytotoxic Metabolites: Analysis and Perspectives on Their Application in Weed Control as an Innovative Sustainable Solution
by Diego Ocán-Torres, Walter José Martínez-Burgos, Maria Clara Manzoki, Vanete Thomaz Soccol, Carlos José Dalmas Neto and Carlos Ricardo Soccol
Plants 2024, 13(14), 1996; https://doi.org/10.3390/plants13141996 - 22 Jul 2024
Cited by 1 | Viewed by 1553
Abstract
Weeds cause significant agricultural losses worldwide, and herbicides have traditionally been the main solution to this problem. However, the extensive use of herbicides has led to multiple cases of weed resistance, which could generate an increase in the application concentration and consequently a [...] Read more.
Weeds cause significant agricultural losses worldwide, and herbicides have traditionally been the main solution to this problem. However, the extensive use of herbicides has led to multiple cases of weed resistance, which could generate an increase in the application concentration and consequently a higher persistence in the environment, hindering natural degradation processes. Consequently, more environmentally friendly alternatives, such as microbial bioherbicides, have been sought. Although these bioherbicides are promising, their efficacy remains a challenge, as evidenced by their limited commercial and industrial production. This article reviews the current status of microbial-based bioherbicides and highlights the potential of cell-free metabolites to improve their efficacy and commercial attractiveness. Stirred tank bioreactors are identified as the most widely used for production-scale submerged fermentation. In addition, the use of alternative carbon and nitrogen sources, such as industrial waste, supports the circular economy. Furthermore, this article discusses the optimization of downstream processes using bioprospecting and in silico technologies to identify target metabolites, which leads to more precise and efficient production strategies. Bacterial bioherbicides, particularly those derived from Pseudomonas and Xanthomonas, and fungal bioherbicides from genera such as Alternaria, Colletotrichum, Trichoderma and Phoma, show significant potential. Nevertheless, limitations such as their restricted range of action, their persistence in the environment, and regulatory issues restrict their commercial availability. The utilization of cell-free microbial metabolites is proposed as a promising solution due to their simpler handling and application. In addition, modern technologies, including encapsulation and integrated management with chemical herbicides, are investigated to enhance the efficacy and sustainability of bioherbicides. Full article
(This article belongs to the Special Issue Bioherbicide Development for Weed Control II)
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<p>Flow chart for the development of a microbial bioherbicide based on metabolites produced by bacteria or fungi. Four main development phases take place for the successful establishment of a new bioherbicide.</p>
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<p>General scheme of the production of microbial bioherbicides based on cell-free metabolites of fungal or bacterial origin, mainly divided into the upstream and downstream phases.</p>
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<p>Network analysis of scientific terms used to identify innovative trends in the field of microbial bioherbicides. The scientific landscape was developed using VOS Viewer.</p>
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<p>(<b>a</b>) World distribution of patents related to herbicides from microorganisms. (<b>b</b>) Patent distribution over the years.</p>
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12 pages, 3362 KiB  
Article
Alternaria alternata Pathogen from Cuscuta japonica Could Serve as a Potential Bioherbicide
by Yinglong Liu, Ayesha Ahmed, Shahzad Munir, Lei Chen, Pengfei He, Yueqiu He, Ping Tang, Baohua Kong, Yixin Wu and Pengbo He
J. Fungi 2024, 10(7), 494; https://doi.org/10.3390/jof10070494 - 17 Jul 2024
Cited by 1 | Viewed by 994
Abstract
Dodder (Cuscuta spp.) is a dangerous parasitic plant that causes serious damage to crop production and is challenging to eliminate. Herbicide application is a common strategy to control dodder in the field, but it is costly, ineffective, and further results in hazardous [...] Read more.
Dodder (Cuscuta spp.) is a dangerous parasitic plant that causes serious damage to crop production and is challenging to eliminate. Herbicide application is a common strategy to control dodder in the field, but it is costly, ineffective, and further results in hazardous outcomes. Therefore, our study aims to identify the potential pathogens in naturally occurring dodder infections which may provide efficient biocontrol options. In this regard, the pathogens were isolated from the infected plants, their pathogenicity was validated through inoculation, and the optimal culture conditions for their growth were identified by determining the pathogenicity difference. The pathogenicity range was determined in vitro using the leaves of common horticultural plants and crops. Furthermore, a small range of horticultural plants parasitized by Cuscuta reflexa in the field were inoculated with the pathogen to determine their biosafety and biocontrol potential, and the pathogens were identified by morphological and molecular characterization. We found 7 strains that were isolated after pathogen enrichment culture. Among them, Cbp6 and Cbp7 showed the highest pathogenicity against C. reflexa. After testing the inoculation of more than 50 species of plants, only 9 species showed varying degrees of lesions on leaves, which proved the high biosafety for common plants. Field spraying of these pathogens showed a good control effect on C. reflexa after 21 days; the disease severityreached 66.0%, while its host plant did not display obvious symptoms. In conclusion, the pathogens Cbp6 and Cbp7 were identified as Alternaria alternata, and the results of this study provide a theoretical basis for the biological control of dodder. Full article
(This article belongs to the Section Fungal Genomics, Genetics and Molecular Biology)
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<p>Field symptoms of diseased <span class="html-italic">C. japonica</span> and pathogen enrichment culture. (<b>A</b>) field symptoms of diseased <span class="html-italic">C. japonica</span> (white dotted circle) and pathogenicity of inoculation on <span class="html-italic">C. reflexa</span>. (<b>B</b>) symptoms after 7 days of pathogen enrichment culture. (<b>C</b>) differences in disease severity in the field and after inoculation. Note: letters a and b indicate significant differences between the disease indices of the tested samples.</p>
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<p>Isolation and pathogenicity determination of dodder pathogens. (<b>A</b>) morphological characteristics of pathogens (white scale bar is 1 cm, black scale bar is 20 µm). (<b>B</b>) differences in the pathogenicity of pathogens. (<b>C</b>) differences in disease severity after inoculation with pathogens. Note: letters a–g indicate significant differences between the disease indices of the tested samples.</p>
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<p>Differences in the pathogenicity of the dodder pathogens Cbp6 and Cbp7. (<b>A</b>) pathogenicity of different concentrations of spore suspensions of pathogens Cbp6 and Cbp7 on <span class="html-italic">C. reflexa</span>. (<b>B</b>) differences in disease severity of Cbp6 and Cbp7 on <span class="html-italic">C. reflexa.</span> Note: letters a–c indicate significant differences between the disease indices of the tested samples.</p>
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<p>Physiological characterization of dodder pathogens. Colony diameter (<b>A</b>) and conidia production (<b>B</b>) of Cbp6 and Cbp7 on different media. Colony diameter (<b>C</b>) and conidia production (<b>D</b>) of Cbp6 and Cbp7 under different pH values. Colony diameter (<b>E</b>) and conidia production (<b>F</b>) of Cbp6 and Cbp7 under different temperature conditions. Note: letters a–e indicate significant differences between the disease indices of the tested samples.</p>
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<p>Pathogenicity of dodder pathogens on common plants. − not pathogenic; + pathogenic.</p>
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<p>Efficacy of pathogens against dodder in the field. (<b>A</b>) pathogenicity of pathogen Cbp6 and Cbp7 on <span class="html-italic">C. reflexa</span> in the field. (<b>B</b>) disease severity of Cbp6 and Cbp7 on <span class="html-italic">C. reflexa</span>. (<b>C</b>) relative control effect of Cbp6 and Cbp7 against <span class="html-italic">C. reflexa.</span> Note: letters a–g indicate significant differences between the disease indices of the tested samples.</p>
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<p>Morphological characterization and target gene sequencing identification of dodder pathogens. (<b>A</b>) Colony morphology of Cbp6. (<b>B</b>) Conidiophore of Cbp6. (<b>C</b>) Conidia of Cbp6. (<b>D</b>) Colony morphology of Cbp7. (<b>E</b>) Conidiophore of Cbp7. (<b>F</b>) Conidia of Cbp7. (<b>G</b>) Phylogenetic tree based on jointing ITS, <span class="html-italic">LSU</span>, and <span class="html-italic">RPB2</span> sequences of Cbp6 and Cbp7 (black dot indicates the dodder pathogens in this study). Note: scale bars in the images are 10 µm.</p>
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11 pages, 765 KiB  
Article
Antifungal and Allelopathic Effects of Essential Oil from Calyptranthes concinna DC. Dried Leaves and of Its Major Constituent Elemicin
by Cassia C. Fernandes, Alline L. B. Dias, Jaciel G. dos Santos, Irles J. M. M. da Silva and Mayker L. D. Miranda
Agronomy 2024, 14(7), 1527; https://doi.org/10.3390/agronomy14071527 - 14 Jul 2024
Cited by 1 | Viewed by 1022
Abstract
Essential oils (EOs) are natural products widely used in sustainable agrochemistry, not only because they are biodegradable and safe but also because they are regarded as alternatives to chemical fungicides against fungal species that attack crops. Allelopathy, another field of study, falls within [...] Read more.
Essential oils (EOs) are natural products widely used in sustainable agrochemistry, not only because they are biodegradable and safe but also because they are regarded as alternatives to chemical fungicides against fungal species that attack crops. Allelopathy, another field of study, falls within the most recent and sustainable strategies applied to weed suppression to replace synthetic herbicides. Therefore, this study reports the chemical composition and allelopathic and antifungal effects of the EOs extracted from Calyptranthes concinna dried leaves (Cc-EO) and its pure major constituent elemicin. Their antifungal activities were evaluated by the disk diffusion method (DDM) at doses between 0.05 mg/mL and 0.4 mg/mL of Cc-EO and elemicin. The allelopathic effect was evaluated by studying the inhibition of germination and the growth of Lactuca sativa seeds. The chemical composition of Cc-EO was determined by GC-MS and GC-FID analyses. The major constituents of Cc-EO were elemicin (60.5%), α-cadinol (9.0%) and caryophyllene oxide (8.3%). Cc-EO and elemicin were assayed in vitro against 17 fungi of agronomic interest (Aspergillus niger, A. flavus, A. nomius, Penicillium digitatum, P. expansum, Sclerotinia sclerotiorum, S. rolfsii, S. minor, Fusarium graminearum, Myrothecium verrucaria, Corynespora cassiicola, Erwinia psidii, Colletotrichum musae, Alternaria carthami, Rhizoctonia solani, Rhizopus stolonifer and Macrophomina phaseolina). The concentration of Cc-EO (0.4 mg/mL) inhibited 100% of the mycelium growth of seven strains, equal to the fungicide fluazinam, which was used as a positive control. Elemicin showed antifungal activity against all fungi at all concentrations under investigation (above 50%). A strong allelopathic effect was recorded for Cc-EO and elemicin at the dose of 0.28 mg/mL, with the almost total inhibition of germination. This study revealed, for the first time, the strong and remarkable fungicidal and allelopathic effects of Cc-EO and elemicin, an important finding for the agrochemical field. Full article
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<p><span class="html-italic">C. concinna</span> DC. leaves (Myrtaceae).</p>
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<p>Major volatile constituents of Cc-EO: elemicin (60.5%, <b>1</b>), α-cadinol (9.0%, <b>2</b>) and caryophyllene oxide (8.3%, <b>3</b>).</p>
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18 pages, 36148 KiB  
Article
Effects of Phloretin on Seedling Growth and Histochemical Distribution of Phenols, Polysaccharides and Lipids in Capsella bursa-pastoris (L.) Medik.
by Milica Đorđić, Dušica Janošević, Dijana Smailagić, Nevena Banjac, Slavica Ninković, Mariana Stanišić and Milena Trajković
Plants 2024, 13(14), 1890; https://doi.org/10.3390/plants13141890 - 9 Jul 2024
Viewed by 875
Abstract
The present study evaluates the phytotoxic effects of phloretin, a prevalent secondary metabolite of apple trees, on the broadleaf weed Capsella bursa-pastoris (L.) Medik. known for its resistant myxospermous seeds that form a long-lasting soil bank. The results indicate a significant, dose-dependent inhibitory [...] Read more.
The present study evaluates the phytotoxic effects of phloretin, a prevalent secondary metabolite of apple trees, on the broadleaf weed Capsella bursa-pastoris (L.) Medik. known for its resistant myxospermous seeds that form a long-lasting soil bank. The results indicate a significant, dose-dependent inhibitory effect of phloretin on the growth and morphological parameters of weed seedlings grown in vitro. Although the applied phloretin concentrations (250–1000 µM) were not lethal to the C. bursa-pastoris seedlings after two weeks, the metabolism of the seedlings was impaired, resulting in an accumulation of lipid droplets in the root tips and root hairs. Histochemical analysis shows deposits of phenols in the root epidermal cells, which are probably aggregates of phloretin or its metabolic derivatives. The accumulation of pectin in the cell walls of root border cells in phloretin-treated seedlings indicates an attempt to reduce the uptake of phloretin and reduce its concentration in the cells. Inhibition of shoot growth associated with chlorosis and reduced photosynthetic pigment content is a consequence of seedling exposure to phloretin. This study provides a basis for further evaluation of phloretin as a new bioherbicidal compound and for elucidating the mechanism underlying its phytotoxic activity. Full article
(This article belongs to the Section Phytochemistry)
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<p>Germination of <span class="html-italic">C. bursa-pastoris</span> seeds on ½MS medium with different concentrations of phloretin (0, 250, 500 and 1000 μM) in in vitro culture. (<b>A</b>) Percentage of germination during 14-day period; (<b>B</b>) germination index at 14th day of seedling growth. Values represent means ± SE (standard error) of 30 seeds per each treatment repeated three times (n = 90). Values denoted by the same letter of the same color are not significantly different at <span class="html-italic">p</span> ≤ 0.05 per Fisher’s least significant difference (LSD) test.</p>
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<p><span class="html-italic">C. bursa-pastoris</span> seedlings after 14 days of vertical growth in in vitro culture on ½MS nutrient medium with different concentrations of phloretin. Seedlings on the medium (<b>A</b>) without phloretin—control; (<b>B</b>) with 250 μM phloretin; (<b>C</b>) 500 μM phloretin; and (<b>D</b>) 1000 μM phloretin. Bar = 10 mm.</p>
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<p>Phloretin effects on <span class="html-italic">C. bursa-pastoris</span> seedlings during 14 days of vertical growth in in vitro culture: (<b>A</b>) root length (mm); (<b>B</b>) number of lateral roots per seedling; (<b>C</b>) shoot length (mm); and (<b>D</b>) number of leaves per seedling. Values represent means ± SE of 30 seedlings per each treatment repeated three times (n = 90). Values denoted by the same letter of the same color are not significantly different at <span class="html-italic">p</span> ≤ 0.05 per Fisher’s least significant difference (LSD) test.</p>
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<p>Dose-dependent curves of phloretin-induced root growth inhibition of <span class="html-italic">C. bursa-pastoris</span> seedlings during 14 days of vertical growth in in vitro culture.</p>
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<p>Phloretin effects on <span class="html-italic">C. bursa-pastoris</span> seedlings. (<b>A</b>) Fresh weight and (<b>B</b>) vigor index during 14 days of seedling growth in in vitro culture. Values represent means ± SE of 30 seedlings per each treatment repeated three times (n = 90). Values denoted by the same letter of the same color are not significantly different at <span class="html-italic">p</span> ≤ 0.05 per Fisher’s least significant difference (LSD) test.</p>
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<p>Phloretin effects on (<b>A</b>) chlorophyll <span class="html-italic">a</span> and <span class="html-italic">b</span> content; (<b>B</b>) chlorophyll <span class="html-italic">a</span> and <span class="html-italic">b</span> ratio; (<b>C</b>) total chlorophyll and carotenoid contents; and (<b>D</b>) chlorophylls and carotenoids ratio in <span class="html-italic">C. bursa-pastoris</span> seedling shoots after 14 days of seedling growth in in vitro culture. The results represent mean of three biological replicates. Different letters indicate statistically significant differences based on Fisher’s LSD test (<span class="html-italic">p</span> ≤ 0.05).</p>
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<p>Toluidine Blue O staining of phenols in the roots of <span class="html-italic">C. bursa-pastoris</span> seedlings grown on the ½MS nutrient medium without (left) or with 500 µM phloretin (right) in culture in vitro for 14 days. Mature zone (<b>A</b>) and root apex (<b>B</b>) of control root; mature zone (<b>C</b>) and root apex (<b>D</b>) of phloretin-treated root. Bar = 50 µm (<b>A</b>,<b>C</b>) and 20 µm (<b>B</b>,<b>D</b>). rp—lateral root primordium.</p>
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<p>The root of <span class="html-italic">C. bursa-pastoris</span> seedlings grown on ½MS nutrient medium without (left) and with 500 µM phloretin (right) in culture in vitro for 14 days. Iodine–potassium iodide (IKI) staining of starch in the root tips of control (<b>A</b>) and phloretin-treated root (<b>B</b>). Bar = 20 µm (<b>A</b>,<b>B</b>). Rhutenium red staining of pectin in the root tips of control (<b>C</b>) and phloretin-treated root (<b>D</b>). Bar = 50 µm (<b>C</b>,<b>D</b>). Sudan Black B staining of lipids in the root tips of control (<b>E</b>) and phloretin-treated seedling (<b>F</b>). Bar = 20 µm (<b>E</b>,<b>F</b>).</p>
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16 pages, 7194 KiB  
Article
Structure-Based Design, Virtual Screening, and Discovery of Novel Patulin Derivatives as Biogenic Photosystem II Inhibiting Herbicides
by He Wang, Jing Zhang, Yu Ji, Yanjing Guo, Qing Liu, Yuan Chang, Sheng Qiang and Shiguo Chen
Plants 2024, 13(12), 1710; https://doi.org/10.3390/plants13121710 - 20 Jun 2024
Viewed by 1044
Abstract
Computer-aided design usually gives inspirations and has become a vital strategy to develop novel pesticides through reconstructing natural lead compounds. Patulin, an unsaturated heterocyclic lactone mycotoxin, is a new natural PSII inhibitor and shows significant herbicidal activity to various weeds. However, some evidence, [...] Read more.
Computer-aided design usually gives inspirations and has become a vital strategy to develop novel pesticides through reconstructing natural lead compounds. Patulin, an unsaturated heterocyclic lactone mycotoxin, is a new natural PSII inhibitor and shows significant herbicidal activity to various weeds. However, some evidence, especially the health concern, prevents it from developing as a bioherbicide. In this work, molecular docking and toxicity risk prediction are combined to construct interaction models between the ligand and acceptor, and design and screen novel derivatives. Based on the analysis of a constructed patulin–Arabidopsis D1 protein docking model, in total, 81 derivatives are designed and ranked according to quantitative estimates of drug-likeness (QED) values and free energies. Among the newly designed derivatives, forty-five derivatives with better affinities than patulin are screened to further evaluate their toxicology. Finally, it is indicated that four patulin derivatives, D3, D6, D34, and D67, with higher binding affinity but lower toxicity than patulin have a great potential to develop as new herbicides with improved potency. Full article
(This article belongs to the Special Issue Bioherbicide Development for Weed Control II)
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<p>Flow chart illustrating the structure-based ligand design and discovery of novel patulin derivatives with high herbicidal activity.</p>
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<p>Simulated modeling of patulin binding to the D1 protein of <span class="html-italic">Arabidopsis</span>. (<b>A</b>) The chemical structure of patulin. (<b>B</b>) Hydrogen bonding interactions of patulin binding to the D1 protein. (<b>C</b>) The stereo view of the patulin binding environment of the D1 protein, in which carbon, oxygen, nitrogen, and hydrogen atoms are displayed in gray, red, blue, and white, respectively. The green dashed lines represent the possible hydrogen bonds. (<b>D</b>) The surface representation of the Q<sub>B</sub> binding site with bound patulin.</p>
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<p>Binding interactions of patulin derivatives at the Q<sub>B</sub> binding site of D1 protein of <span class="html-italic">Arabidopsis</span>. An illustration of the binding mode of compounds D3 (<b>A</b>), D6 (<b>D</b>), D34 (<b>G</b>), and D67 (<b>J</b>) binding to the D1 protein, respectively. Key interaction types are represented in the color code. The stereo view of compound D3 (<b>B</b>), D6 (<b>E</b>), D34 (<b>H</b>), and D67 (<b>K</b>) binding environments at the Q<sub>B</sub> binding site. The surface representation of the Q<sub>B</sub> binding site with compounds D3 (<b>C</b>), D6 (<b>F</b>), D34 (<b>I</b>), and D67 (<b>L</b>), respectively.</p>
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