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16 pages, 7493 KiB  
Article
Genome-Wide Identification and Expression Analysis of PaNRT Gene Family Under Various Nitrogen Conditions in Avocado (Persea americana Mill.)
by Yuan Tian, Ruiyuan Jiang and Jian Qin
Genes 2024, 15(12), 1600; https://doi.org/10.3390/genes15121600 - 14 Dec 2024
Viewed by 390
Abstract
Background: Avocado is an important economic fruit tree that requires a lot of nitrogen (N) to support growth and development. Nitrate transporter (NRT) gene family plays an essential role in N uptake and use in plants. However, no systematic identification of the NRT [...] Read more.
Background: Avocado is an important economic fruit tree that requires a lot of nitrogen (N) to support growth and development. Nitrate transporter (NRT) gene family plays an essential role in N uptake and use in plants. However, no systematic identification of the NRT gene family has been reported in avocado. Methods: Bioinformatic analysis was used to identify and characterize the NRT gene family in avocado. The five N additions (29.75, 59.50, 119.00, 178.50, and 238.00 mg/L N) were used to identify the N requirement of avocado seedlings based on physiological indexes, while RNA-seq was conducted to analyze the response of PaNRTs under low-N and high-N conditions. Results: Sixty-one members of the NRT gene family were identified and dispersed on 12 chromosomes in avocado. Many cis-regulatory elements (CREs) related to phytohormonal and stress response were found in the PaNRTs promoter regions. The avocado leaves in N3 have the highest activities of N-assimilating enzymes and N content as well as the lowest activities of antioxidant enzymes. Thus, 29.75 mg/L and 119.00 mg/L were chosen as low-N supply and normal-N supply for transcriptome analysis. The transcriptome analysis showed that PaNRT1.11, PaNRT1.22, PaNRT1.32, PaNRT1.33, PaNRT1.38, and PaNRT1.52 and PaNRT1.56 among PaNRT1 members were up-regulated under normal-N condition in the leaves or roots, suggesting that these genes might affect N absorption under nitrate-sufficient conditions in avocado. RT-qPCR analysis found the relative expression patterns of selected genes among four samples were consistent with transcriptome data, suggesting that transcriptome data were reliable. Conclusions: This study would provide valuable information for identifying the functions of the NRT gene family in avocado. Full article
(This article belongs to the Section Plant Genetics and Genomics)
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<p>Distribution for the <span class="html-italic">PaNRT</span> genes on twelve chromosomes. The chromosome number is represented at each bar top. Mb, megabase.</p>
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<p>Phylogenetic analysis of NRT protein involved 62 <span class="html-italic">Arabidopsis</span> NRT protein and 61 avocado NRT protein sequences. The tree is further clustered into 3 subfamilies, which are shown in different colors.</p>
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<p>Phylogenetic relationships, motif distribution, and gene structure of <span class="html-italic">PaNRT</span> genes. (<b>a</b>) The phylogenetic relationships of 61 <span class="html-italic">PaNRT</span> proteins using the neighbor-joining method and the conserved domain architecture of the <span class="html-italic">PaNRT</span> proteins. (<b>b</b>) Gene structure analysis of the <span class="html-italic">PaNRT</span> gene family. The bars of yellow and blue represent UTR and CDS, respectively.</p>
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<p>Characterization of <span class="html-italic">cis</span>-elements in the promoter regions of <span class="html-italic">PaNRT</span> genes. (<b>a</b>) Distribution of <span class="html-italic">cis</span>-elements in different colored rectangles. The y-axis indicates the upstream length to the translation start site. (<b>b</b>) The number of <span class="html-italic">PaNRT</span> genes harboring different <span class="html-italic">cis</span>-elements.</p>
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<p>Differentially expressed genes (DEGs) of leaf and root in avocado under different N supply conditions. (<b>a</b>) The display of DEGs in PaLL, PaLR, PaHL, and PaHR. (<b>b</b>) The up-regulated and downregulated DEGs in PaLL vs. PaHL group. (<b>c</b>) The up-regulated and downregulated DEGs in PaLR vs. PaHR group.</p>
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<p>The expression profiles of <span class="html-italic">PaNRT</span> genes in the leaf and root under different N conditions. (<b>a</b>) Heatmap illustrates the expression levels of <span class="html-italic">PaNRT</span> genes. (<b>b</b>) Fold change of <span class="html-italic">PaNRT</span> genes. (<b>c</b>) Expression data from RNA-Seq by RT-qPCR. (<b>d</b>) Validation of 8 <span class="html-italic">PaNRT</span> genes’ FPKM. Different letters indicate significant differences among different samples (<span class="html-italic">p</span> &lt; 0.05). R value indicates Pearson correlation coefficients between RNA-seq and RT-qPCR data, ** indicates a significance at <span class="html-italic">p</span> &lt; 0.05.</p>
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15 pages, 2760 KiB  
Article
Isolation, Antibacterial Activity and Molecular Identification of Avocado Rhizosphere Actinobacteria as Potential Biocontrol Agents of Xanthomonas sp.
by Jesús Rafael Trinidad-Cruz, Gabriel Rincón-Enríquez, Zahaed Evangelista-Martínez, Luis López-Pérez and Evangelina Esmeralda Quiñones-Aguilar
Microorganisms 2024, 12(11), 2199; https://doi.org/10.3390/microorganisms12112199 - 31 Oct 2024
Viewed by 961
Abstract
Actinobacteria, especially the genus Streptomyces, have been shown to be potential biocontrol agents for phytopathogenic bacteria. Bacteria spot disease caused by Xanthomonas spp. may severely affect chili pepper (Capsicum annuum) crops with a subsequent decrease in productivity. Therefore, the objective of [...] Read more.
Actinobacteria, especially the genus Streptomyces, have been shown to be potential biocontrol agents for phytopathogenic bacteria. Bacteria spot disease caused by Xanthomonas spp. may severely affect chili pepper (Capsicum annuum) crops with a subsequent decrease in productivity. Therefore, the objective of the study was to isolate rhizospheric actinobacteria from soil samples treated by physical methods and evaluate the inhibitory activity of the isolates over Xanthomonas. Initially, soil samples collected from avocado tree orchards were treated by dry heat air and microwave irradiation; thereafter, isolation was implemented. Then, antibacterial activity (AA) of isolates was evaluated by the double-layer agar method. Furthermore, the positive/negative effect on AA for selected isolates was evaluated on three culture media (potato-dextrose agar, PDA; yeast malt extract agar, YME; and oat agar, OA). Isolates were identified by 16S rRNA sequence analysis. A total of 198 isolates were obtained; 76 (series BVEZ) correspond to samples treated by dry heat and 122 strains (series BVEZMW) were isolated from samples irradiated with microwaves. A total of 19 dry heat and 25 microwave-irradiated isolates showed AA with inhibition zones (IZ, diameter in mm) ranging from 12.7 to 82.3 mm and from 11.4 to 55.4 mm, respectively. An increment for the AA was registered for isolates cultured on PDA and YME, with an IZ from 21.1 to 80.2 mm and 14.1 to 69.6 mm, respectively. A lower AA was detected when isolates were cultured on OA media (15.0 to 38.1 mm). Based on the 16S rRNA gene sequencing analysis, the actinobacteria belong to the Streptomyces (6) and Amycolatopsis (2) genera. Therefore, the study showed that microwave irradiation is a suitable method to increase the isolation of soil bacteria with AA against Xanthomonas sp. In addition, Streptomyces sp. BVEZ 50 was the isolate with the highest IZ (80.2 mm). Full article
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<p>Concentration of cultured actinobacteria in the soil sample of the avocado rhizosphere pretreated with dry heat (70 °C for 1 h) and microwave irradiation (1100 W for 3 min) in the ISP2 and ISP3 agar culture media. The data are the mean ± standard deviation. Asterisks (*) indicate significant differences between culture media or pretreatments according to Student’s <span class="html-italic">t</span>-test (<span class="html-italic">p</span> ≤ 0.05). NS: not significant.</p>
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<p>Image of initial screening of in vitro antibacterial activity of actinobacteria performed by the punctual inoculation and double-layer agar: (<b>a</b>) BVEZ isolates; (<b>b</b>) BVEZMW isolates.</p>
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<p>Effect of culture medium (PDA, ISP2 and ISP3) on the antibacterial activity of selected actinobacteria of the BVEZ and BVEZMW series against <span class="html-italic">Xanthomonas</span> sp. BV801. The diameter data of the inhibition zone represent the average of four biological repetitions. -: not detected. Different letters on each bar for each culture medium indicate significant differences among the media according to Tukey’s test (<span class="html-italic">p</span> ≤ 0.05).</p>
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<p>Representative image of the effect of culture medium (PDA, ISP2 and ISP3) on the antibacterial activity of eight selected actinobacteria from the BVEZ and BVEZMW series against <span class="html-italic">Xanthomonas</span> sp. BV801 by the double-layer method of agar.</p>
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<p>Phylogenetic neighbor-joining tree based on the 16S rRNA gene sequence showing the phylogenetic relationships among the BVEZ (32, 50, 71, and 73), BVEZMW (12, 30, 60, and 81) actinobacteria and type strains of the genera <span class="html-italic">Streptomyces</span> and <span class="html-italic">Amycolatopsis</span>. The bootstrap values (&gt;50%) are shown next to the branches. The sequence of <span class="html-italic">Rubrobacter radiotolerans</span> DSM 5868<sup>T</sup> was used as an external group. The access numbers to the GenBank sequences are shown in parentheses. Bar = 0.02 substitutions by nucleotide position.</p>
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15 pages, 2233 KiB  
Article
Effect of Fertilization in Companion Cropping Systems of Andean Fruit Trees in the Municipality of Ipiales
by Ovidio Javier Moran-Chamorro, Danita Andrade-Díaz, Juan Sebastian Chirivi-Salomon and Pedro Alexander Velasquez-Vasconez
Horticulturae 2024, 10(10), 1107; https://doi.org/10.3390/horticulturae10101107 - 18 Oct 2024
Viewed by 673
Abstract
Companion cropping offers a potential solution to the challenges of sustainable agriculture, such as optimizing resource use and reducing reliance on chemical inputs. The problem of achieving higher yields while maintaining environmental health remains critical. This practice enhances natural resource conservation, improves fertilization, [...] Read more.
Companion cropping offers a potential solution to the challenges of sustainable agriculture, such as optimizing resource use and reducing reliance on chemical inputs. The problem of achieving higher yields while maintaining environmental health remains critical. This practice enhances natural resource conservation, improves fertilization, and optimizes nutrient cycling through the balanced use of chemical and organic sources. Studies, such as those involving tree tomato and Hass avocado, have demonstrated a significant yield increase compared to monocultures, underscoring the viability of this practice. In addition to their environmental benefits, companion crops provide economic advantages by allowing producers to harvest multiple products simultaneously, thereby strengthening food security and the rural economy. This study evaluated three levels of fertilization and interactions between fruit trees at different altitudes, observing differential behavior in the variables evaluated. The combination of cape gooseberry and blackberry showed significantly positive results, with more leaves and fewer pests, demonstrating the benefits of companion plants. A trend towards the combined use of chemical and organic fertilizers was observed, a potential strategy to reduce costs and improve crop growth. The results indicated that the UF system (P. peruviana and P. vulgaris) had the highest plant height, while TF (tree tomato and bean) showed the best stem perimeter development. The incidence of pests was also significant, with Trialeurodes vaporarioum being most prevalent in the P. peruviana companion. These findings support companion cropping as a viable and promising strategy for more efficient and sustainable agriculture, offering both environmental and economic benefits. Full article
(This article belongs to the Special Issue Organic Fertilizers in Horticulture)
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<p>Location of the experimental sites: 1. Tablon; 2. Cundala; 3. Chapicha; 4. Rancheria; 5. Santa Barbara; 6. Culacal; 7. Cundala; 8. Tuquer; 9. Churumbuta; 10. Yerba Buena; 11. Capuli; 12. Churumbuta—Laguna de Vaca; 13. Campanario; 14. Cundala; and 15. Chuchala.</p>
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<p>Intercropping systems evaluated in the project. 1. Cape gooseberry, blackberry, and bean, system 2. Tree tomato, blackberry, and bean, system 3. Purple passion fruit, cape gooseberry, and beans, system 4. Purple passion fruit, tree tomato, and bean and system 5. Purple passion fruit, blackberry, and bean.</p>
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<p>Integral analysis of growth variables with comparison of regression coefficients (β) under the split-strip design model. (<b>A</b>) Plant height, (<b>B</b>) stem perimeter, (<b>C</b>) number of leaves, (<b>D</b>) leaf area, and (<b>E</b>) leaf area index.</p>
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<p>Analysis of the presence of diseases in different companions—(<b>A</b>) heatmap and (<b>B</b>) simple correlation.</p>
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<p>Analysis of the presence of pests in different companions—(<b>A</b>) heatmap and (<b>B</b>) simple correlation.</p>
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12 pages, 821 KiB  
Review
Sun Protection as a Strategy for Managing Heat Stress in Avocado Trees
by Francisco José Domingues Neto, Débora Cavalcante dos Santos Carneiro, Marcelo de Souza Silva, Marco Antonio Tecchio, Sarita Leonel, Adilson Pimentel Junior, Elizabeth Orika Ono and João Domingos Rodrigues
Plants 2024, 13(20), 2854; https://doi.org/10.3390/plants13202854 - 11 Oct 2024
Viewed by 867
Abstract
The increasing incidence of heat stress due to global climate change poses a significant challenge to avocado (Persea americana) cultivation, particularly in regions with intense solar radiation. This review evaluates sun protection strategies, focusing on the efficacy of different sunscreen products [...] Read more.
The increasing incidence of heat stress due to global climate change poses a significant challenge to avocado (Persea americana) cultivation, particularly in regions with intense solar radiation. This review evaluates sun protection strategies, focusing on the efficacy of different sunscreen products such as kaolin, titanium dioxide, and calcium oxide in mitigating thermal stress in avocado trees. The application of these materials was shown to reduce leaf and fruit surface temperatures, improve photosynthetic efficiency, and enhance fruit quality by preventing sunburn and dehydration. Despite these benefits, challenges remain, including the optimal timing and dosage of application, and the potential residue impacts on fruit marketability. The review emphasizes the need for ongoing research to develop more effective formulations and to integrate these sun protection strategies with other agronomic practices. The role of extension services in educating producers about the proper use of these technologies is also highlighted as crucial for the successful adoption of sun protection measures in avocado farming. Full article
(This article belongs to the Special Issue Abiotic Stress Responses in Plants)
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<p>Graphical abstract of sun protection as a strategy for managing heat stress in avocado trees, 2024.</p>
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18 pages, 1116 KiB  
Article
The Determination of Capitalization Rate by the Remote Segments Approach: The Case of an Agricultural Land Appraisal
by Giuseppe Cucuzza, Marika Cerro and Laura Giuffrida
Agriculture 2024, 14(10), 1709; https://doi.org/10.3390/agriculture14101709 - 29 Sep 2024
Cited by 1 | Viewed by 547
Abstract
In the absence of comparative real estate data in the market segment of the property to be estimated, the appraiser may resort to income capitalization to estimate the market value. Often, however, the choice of which rate to apply is affected by subjective [...] Read more.
In the absence of comparative real estate data in the market segment of the property to be estimated, the appraiser may resort to income capitalization to estimate the market value. Often, however, the choice of which rate to apply is affected by subjective and arbitrary assessments. The estimation result can therefore be inaccurate and rather unclear. However, the Remote Segments Approach (RSA), through appropriate adjustments on the original values, prices, and incomes detected in the remote segments, makes it possible to arrive at an appraisal result consistent with estimative logic and real estate valuation standards. The proposed application illustrates the estimation of the market value of a specialized fruit orchard of avocado, which is to be considered new in relation to other fruit species already present in the reference area. The adjustments required by the RSA are solved with the General Appraisal System (GAS), defining the difference matrix based on relevant characters common to all segments considered. The application is carried out by comparing the segment in which the orchard being estimated falls (subject) with other remote market segments in which prices and incomes constituted by other tree crops are collected. The market value of the subject is derived by making adjustments to the prices and incomes observed in the remote segments of comparison with a comparison function constructed through relevant characters common to the segments considered. The comparison function makes it possible to arrive at the determination of the capitalization rate to be used in estimating the value of the fruit orchard by income approach. While it is based on the comparison of segments, the approach followed allows for a value judgment consistent with the estimation comparison and capable of providing a solution less conditioned by the appraiser’s expertise in the presence of particularly pronounced limiting conditions. Full article
(This article belongs to the Section Agricultural Economics, Policies and Rural Management)
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<p>Identification of the territorial area where the avocado fruit orchard is located.</p>
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17 pages, 3475 KiB  
Article
Combined Analysis of Transcriptome and Metabolome Provides Insights in Response Mechanism under Heat Stress in Avocado (Persea americana Mill.)
by Xinyi Zheng, Qing Zhu, Yi Liu, Junxiang Chen, Lingxia Wang, Yu Xiu, Haoyue Zheng, Shanzhi Lin, Peng Ling and Minqiang Tang
Int. J. Mol. Sci. 2024, 25(19), 10312; https://doi.org/10.3390/ijms251910312 - 25 Sep 2024
Viewed by 934
Abstract
Plants generate a range of physiological and molecular responses to sustain their growth and development when suffering heat stress. Avocado is a type of tropical fruit tree with high economic value. Most avocado cultivars delete, wither, or even die when exposed to heat [...] Read more.
Plants generate a range of physiological and molecular responses to sustain their growth and development when suffering heat stress. Avocado is a type of tropical fruit tree with high economic value. Most avocado cultivars delete, wither, or even die when exposed to heat stress for a long time, which seriously restricts the introduction and cultivation of avocados. In this study, samples of a heat-intolerant variety (‘Hass’) were treated under heat stress, and the transcriptomics and metabolomics were analyzed, with the expectation of providing information on the variety improvement and domestication of avocados. The differentially expressed genes identified using transcriptome analysis mainly involved metabolic pathways such as plant hormone signal transduction, plant–pathogen interaction, and protein processing in the endoplasmic reticulum. Combined transcriptome and metabolome analysis indicated that the down-regulation of Hass.g03.10206 and Hass.g03.10205 in heat shock-like proteins may result in the reduced Trehalose and Sinapoyl aldehyde content. Metabolomics analysis results indicated that the decrease in Trehalose and Sinapoyl aldehyde content may be an important factor for heat intolerance. These results provide important clues for understanding the physiological mechanisms of adaptation to heat stress in avocados. Full article
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<p>Color changes of leaves at different heat stress times. The horizontal axis represents different heat stress times from 0 to 11 days, and the vertical axis represents the color parameters of L value, a value, b value, c value, and h value, respectively. The L value represents the brightness of the sample, with higher values indicating a brighter color. The a value represents the red-green color degree of the sample, with positive values indicating a red bias and negative values indicating a green bias. The b value represents the yellow-blue color degree of the sample, with positive values indicating a yellow bias and negative values indicating a blue bias. The c value represents the chroma of the sample, with higher values indicating a more saturated color. The h value represents the color phase of the sample, with numerical values indicating color angles.</p>
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<p>Results of gene expression patterns and KEGG enrichment analyses: (<b>a</b>) KEGG enrichment analysis plot for H0 vs. H1 comparison group. According to the KEGG enrichment results, the degree of enrichment is measured by the Rich factor, FDR value, and the number of genes enriched on this pathway. Among them, the Rich factor refers to the ratio of the number of enriched differentially expressed genes in the pathway to the number of annotated differentially expressed genes. The larger the Rich factor, the greater the degree of enrichment becomes. The general range of FDR values is 0–1, and the closer it is to zero, the more significant the enrichment; (<b>b</b>) Venn diagram of differentially expressed genes between H0 vs. H1 and H1 vs. H2 groups; (<b>c</b>) Bar graph of differential transcription factors. The left graph represents the H0 vs. H1 group and the right graph represents the H1 vs. H2 group. The horizontal axis represents different transcription factor families, and the vertical axis represents the number of genes belonging to each transcription factor family.</p>
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<p>Quality control of metabolomics data and content of metabolites: (<b>a</b>) Heatmap of the dem cluster analysis results. In the matrix, columns represent samples and rows represent metabolites. The clustering tree on the left displays the clustering of different metabolites, while the clustering tree at the top represents the clustering of samples. The gradient colors indicate the magnitude of the quantitative values; the deeper the red, the higher the expression level, while the deeper the blue, the lower the expression level. Metabolite names are not displayed when the number of metabolites exceeds 150; (<b>b</b>) DEM principal component analysis; (<b>c</b>) DEM analysis based on PLS-DA score. The x-axis (PC1) represents the scores of the first principal component, and the y-axis (PC2) represents the scores of the second principal component. Each point symbolizes a sample, the shaded area denotes the 95% confidence interval, and the colors indicate different groups.</p>
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<p>Common metabolites: (<b>a</b>) Venn diagram of high-temperature metabolites in H0 vs. H1 and H1 vs. H2 groups; (<b>b</b>) changes in the content of common metabolites of H0 vs. H1 and H1 vs. H2 comparison groups over time under heat stress. The abscissa represents the change time of metabolite content from 0 to 2d, and the ordinate represents the relative content of metabolites. “*” indicates statistical significance, <span class="html-italic">p</span> ≤ 0.05. “**” indicates stronger statistical significance, <span class="html-italic">p</span> ≤ 0.01. While “ns” denotes non-significance, <span class="html-italic">p</span> &gt; 0.05.</p>
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<p>Z-score plot of the H0 vs. H1 and H1 vs. H2 comparison groups. The key metabolites, Trehalose and Sinapoyl Aldehyde, are highlighted in red boxes. The coordinates are then converted Z-score values of the relative content of the metabolite in the sample, the ordinate is the metabolite name, and the colors of the points represent different groups. The closer to the <b>right side</b> indicates the higher relative abundance of the current metabolite in this sample, and the closer to the <b>left side</b> indicates the lower abundance of the current metabolite.</p>
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<p>The correlation between Trehalose and Sinapoyl aldehyde and their common genes. The abscissa represents different genes, and the ordinate represents the correlation coefficient of different genes. A positive value represents a positive correlation, and a negative value represents a negative correlation. The greater the absolute value, the stronger the correlation.</p>
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18 pages, 8622 KiB  
Article
Litter Decomposition Rates of Four Species of Agroecological Importance in the Peruvian Coast and Andean Highland
by Tomás Samaniego, Jorge Ramirez and Richard Solórzano
Nitrogen 2024, 5(3), 772-789; https://doi.org/10.3390/nitrogen5030051 - 13 Sep 2024
Viewed by 907
Abstract
Crop residue decomposition is fundamental for ecosystems, influencing carbon cycling, organic matter accumulation, and promoting plant development through nutrient release. Therefore, this study aimed to ascertain the rate of decomposition of four commonly cultivated crops (alfalfa, maize, avocado, and eucalyptus) along the northern [...] Read more.
Crop residue decomposition is fundamental for ecosystems, influencing carbon cycling, organic matter accumulation, and promoting plant development through nutrient release. Therefore, this study aimed to ascertain the rate of decomposition of four commonly cultivated crops (alfalfa, maize, avocado, and eucalyptus) along the northern coast of Lima (Huaral) and in the Ancash Mountain range (Jangas) areas. Decomposition rates were assessed using mass loss from decomposition bags measuring 15 × 10 cm, filled with 10–15 g of material tailored to each species, and buried at a depth of approximately 5 cm. Sampling occurred every three months over a year, totaling four sampling events with three replicates each, resulting in ninety-six experimental units. The findings demonstrate that the decomposition rates and the release of nutrients were markedly greater in Huaral for maize and avocado. In contrast, these rates were notably elevated in Jangas for alfalfa and eucalyptus. The leaf litter of avocado and eucalyptus (tree) had periods of accumulation and release of heavy metals such as Cd. The initial C/N ratio was one of the main factors related to the nutrient decomposition rate; in contrast, there were no significant relationships with soil properties at the study sites. Full article
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<p>Location of the two study areas: district of “Jangas” and district of “Huaral.”</p>
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<p>Monthly mean temperatures (lines) and rainfall (bars) [<a href="#B24-nitrogen-05-00051" class="html-bibr">24</a>].</p>
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<p>(<b>a</b>) The litter bags that were used; (<b>b</b>) Installation of litter bags in the soil at a 5 cm depth; (<b>c</b>) Installation in the alfalfa plot; (<b>d</b>) Installation in the maize plot; (<b>e</b>) Installation in the avocado plot and (<b>f</b>) Installation in the eucalyptus plot.</p>
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<p>Weight of litter bag remaining (as a percentage of initial weight) for each species and site against time (year fraction), and the fitted exponential decay curves (y = 100 e<sup>−kt</sup>) calculated using nonlinear regression (k values are given in <a href="#nitrogen-05-00051-t003" class="html-table">Table 3</a>).</p>
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<p>(<b>a</b>) C remaining in four crops; (<b>b</b>) N remaining in the four crops; (<b>c</b>) P remaining in the four crops; (<b>d</b>) K remaining in the four crops. Different letters (a,b) indicate significant differences in the Student’s <span class="html-italic">t</span>-test.</p>
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<p>(<b>a</b>) Alfalfa C/N; (<b>b</b>) Maize C/N; (<b>c</b>) Avocado C/N; (<b>d</b>) Eucalyptus C/N ratio. Different letters (a,b,c,d) indicate significant differences.</p>
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<p>(<b>a</b>) Fe remaining in four crops; (<b>b</b>) Cu remaining in the four crops; (<b>c</b>) Zn remaining in the four crops; (<b>d</b>) Cd remaining in the four. Different letters (a,b) indicate significant differences in. Student’s <span class="html-italic">t</span>-test.</p>
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<p>Spearman association between exponential decay model (Kfactor) with other soil and litter parameters. C/Ni: Initial C/N; C/Nf: Final C/N; Da: Bulk density; OM: organic matter; Ci: Initial carbon; Ni: Initial nitrogen; Cf: Final carbon; Nf: Final nitrogen. *** = <span class="html-italic">p</span>-values &lt; 0.001; ** <span class="html-italic">p</span>-values &lt; 0.01; * <span class="html-italic">p</span>-values &lt; 0.05.</p>
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17 pages, 4560 KiB  
Article
Predicting Carbohydrate Concentrations in Avocado and Macadamia Leaves Using Hyperspectral Imaging with Partial Least Squares Regressions and Artificial Neural Networks
by Shahla Hosseini Bai, Mahshid Tootoonchy, Wiebke Kämper, Iman Tahmasbian, Michael B. Farrar, Helen Boldingh, Trisha Pereira, Hannah Jonson, Joel Nichols, Helen M. Wallace and Stephen J. Trueman
Remote Sens. 2024, 16(18), 3389; https://doi.org/10.3390/rs16183389 - 12 Sep 2024
Viewed by 760
Abstract
Carbohydrate levels are important regulators of the growth and yield of tree crops. Current methods for measuring foliar carbohydrate concentrations are time consuming and laborious, but rapid imaging technologies have emerged with the potential to improve the effectiveness of tree nutrient management. Carbohydrate [...] Read more.
Carbohydrate levels are important regulators of the growth and yield of tree crops. Current methods for measuring foliar carbohydrate concentrations are time consuming and laborious, but rapid imaging technologies have emerged with the potential to improve the effectiveness of tree nutrient management. Carbohydrate concentrations were predicted using hyperspectral imaging (400–1000 nm) of leaves of the evergreen tree crops, avocado, and macadamia. Models were developed using partial least squares regression (PLSR) and artificial neural network (ANN) algorithms to predict carbohydrate concentrations. PLSR models had R2 values of 0.51, 0.82, 0.86, and 0.85, and ANN models had R2 values of 0.83, 0.83, 0.78, and 0.86, in predicting starch, sucrose, glucose, and fructose concentrations, respectively, in avocado leaves. PLSR models had R2 values of 0.60, 0.64, 0.91, and 0.95, and ANN models had R2 values of 0.67, 0.82, 0.98, and 0.98, in predicting the same concentrations, respectively, in macadamia leaves. ANN only outperformed PLSR when predicting starch concentrations in avocado leaves and sucrose concentrations in macadamia leaves. Performance differences were possibly associated with nonlinear relationships between carbohydrate concentrations and reflectance values. This study demonstrates that PLSR and ANN models perform well in predicting carbohydrate concentrations in evergreen tree-crop leaves. Full article
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<p>A freshly applied girdle on an avocado branch, shown by a yellow arrow.</p>
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<p>Flowchart summarizing the experimental design and the model development and evaluation.</p>
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<p>Ground (<b>a</b>) avocado and (<b>b</b>) macadamia leaf samples, showing one shaded region of interest (ROI) for each species where mean spectra were extracted.</p>
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<p>The mean corrected relative reflectance of the Vis/NIR spectrum (400–1000 nm) from avocado leaves (n = 210) and macadamia leaves (n = 218). The 100% reflectivity was scaled to 10,000 (integers) by default.</p>
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<p>Measured vs. predicted values for (<b>a</b>) starch (%), (<b>b</b>) sucrose (%), (<b>c</b>) glucose (%), and (<b>d</b>) fructose (%) concentrations of avocado leaves using hyperspectral images. Partial least squares regression models were developed after wavelength selection. RMSE: root mean square error; RPD: ratio of prediction to deviation.</p>
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<p>Measured vs. predicted values for (<b>a</b>) starch (%), (<b>b</b>) sucrose (%), (<b>c</b>) glucose (%) and (<b>d</b>) fructose (%) concentrations of macadamia leaves using hyperspectral images. Partial least squares regression models were developed after wavelength selection. RPD: ratio of prediction to deviation, RMSE: root mean square error.</p>
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<p>β-coefficients of important wavelengths used in partial least squares regression models to predict (<b>a</b>) starch, (<b>c</b>) sucrose, (<b>e</b>) glucose, and (<b>g</b>) fructose concentrations of avocado leaf samples and to predict (<b>b</b>) starch, (<b>d</b>) sucrose, (<b>f</b>) glucose, and (<b>h</b>) fructose concentrations of macadamia leaf samples.</p>
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<p>β-coefficients of principal wavelengths identified using variable importance in projection (VIP) and used in models for predicting (<b>a</b>) starch, (<b>b</b>) sucrose, (<b>c</b>) glucose, and (<b>d</b>) fructose concentrations of avocado (amber columns) and macadamia (white columns) leaf samples.</p>
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12 pages, 3899 KiB  
Article
Non-Structural Carbohydrate Composition of ‘Hass’ Avocado Fruit Is Affected by Maturity, Storage, and Ripening
by Jeremy Burdon, David Billing, Judith Bowen and Helen Boldingh
Horticulturae 2024, 10(8), 866; https://doi.org/10.3390/horticulturae10080866 - 15 Aug 2024
Viewed by 920
Abstract
Avocado fruits are considered unusual because of the large amounts of oil and seven-carbon (7-C) carbohydrates (mannoheptulose and perseitol) in the fruit’s flesh and skin. The fruit may be held on the tree unripe until required for marketing, and in some producing regions, [...] Read more.
Avocado fruits are considered unusual because of the large amounts of oil and seven-carbon (7-C) carbohydrates (mannoheptulose and perseitol) in the fruit’s flesh and skin. The fruit may be held on the tree unripe until required for marketing, and in some producing regions, this may extend past the next flowering period. This prolonged period on the tree is associated with increased oil content and decreased 7-C carbohydrates. There has been relatively less research into soluble hexose sugars and starch. In this research, the inter-relationships between fruit maturation, storage, and ripening have been investigated for both 7-C and six-carbon non-structural carbohydrates using ‘Hass’ fruit harvested from the same trees between 11 and 14 months after flowering. Significant differences were identified in both fruit flesh and skin for most compounds, affected by maturity, storage, and ripening. It is concluded that the non-structural carbohydrate composition of ‘Hass’ fruit is variable, with significant changes occurring associated with maturation, storage, and ripening. The compositions of the flesh and skin tissues are not consistently proportionate. Maturation provides the initial baseline composition from which any further change through storage or ripening can occur. The changes with maturation appear to be associated with the tree’s phenology, with tree-to-tree differences in the timing or degree of change. Full article
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<p>Mannoheptulose (<b>A</b>,<b>B</b>) and perseitol (<b>C</b>,<b>D</b>) in the flesh (<b>A</b>,<b>C</b>) and skin (<b>B</b>,<b>D</b>) of ‘Hass’ avocado fruit from three harvests (H1–H3) sampled when unripe or ripe before (Unstored) or after (Stored) storage for 28 days at 5 °C. Fruits were ripened at 20 °C. Values are the means of 12 fruit ± s.e.m.</p>
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<p>Glucose (<b>A</b>,<b>B</b>), fructose (<b>C</b>,<b>D</b>), and sucrose (<b>E</b>,<b>F</b>) in the flesh (<b>A</b>,<b>C</b>,<b>E</b>) and skin (<b>B</b>,<b>D</b>,<b>F</b>) of ‘Hass’ avocado fruit from three harvests (H1–H3) sampled when unripe or ripe before (Unstored) or after (Stored) storage for 28 days at 5 °C. Fruits were ripened at 20 °C. Values are the means of 12 fruit ± s.e.m.</p>
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<p>Glucose (<b>A</b>,<b>B</b>), fructose (<b>C</b>,<b>D</b>), and sucrose (<b>E</b>,<b>F</b>) in the flesh (<b>A</b>,<b>C</b>,<b>E</b>) and skin (<b>B</b>,<b>D</b>,<b>F</b>) of ‘Hass’ avocado fruit from three harvests (H1–H3) sampled when unripe or ripe before (Unstored) or after (Stored) storage for 28 days at 5 °C. Fruits were ripened at 20 °C. Values are the means of 12 fruit ± s.e.m.</p>
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<p>Starch in the flesh (<b>A</b>) and skin (<b>B</b>) of ‘Hass’ avocado fruit from three harvests (H1–H3) sampled when unripe or ripe before (Unstored) or after (Stored) storage for 28 days at 5 °C. Fruits were ripened at 20 °C. Values are the means of 12 fruit ± s.e.m.</p>
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<p>At-harvest mannoheptulose (<b>A</b>,<b>B</b>) and perseitol (<b>C</b>,<b>D</b>) content of the flesh (<b>A</b>,<b>C</b>) and skin (<b>B</b>,<b>D</b>) of ‘Hass’ avocado fruit. Fruits were harvested three times (H1–H3) from three trees. Values are the means of four fruit ± s.e.m.</p>
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<p>At-harvest glucose (<b>A</b>,<b>B</b>), fructose (<b>C</b>,<b>D</b>), and sucrose (<b>E</b>,<b>F</b>) content of the flesh (<b>A</b>,<b>C</b>,<b>E</b>) and skin (<b>B</b>,<b>D</b>,<b>F</b>) of ‘Hass’ avocado fruit. Fruits were harvested three times (H1–H3) from three trees. Values are the means of four fruit ± s.e.m.</p>
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<p>At-harvest glucose (<b>A</b>,<b>B</b>), fructose (<b>C</b>,<b>D</b>), and sucrose (<b>E</b>,<b>F</b>) content of the flesh (<b>A</b>,<b>C</b>,<b>E</b>) and skin (<b>B</b>,<b>D</b>,<b>F</b>) of ‘Hass’ avocado fruit. Fruits were harvested three times (H1–H3) from three trees. Values are the means of four fruit ± s.e.m.</p>
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<p>At-harvest starch content of the flesh (<b>A</b>) and skin (<b>B</b>) of ‘Hass’ avocado fruit. Fruits were harvested three times (H1–H3) from three trees. Values are the means of four fruit ± s.e.m.</p>
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14 pages, 752 KiB  
Article
Selective Retention of Cross-Fertilised Fruitlets during Premature Fruit Drop of Hass Avocado
by Nimanie S. Hapuarachchi, Wiebke Kämper, Shahla Hosseini Bai, Steven M. Ogbourne, Joel Nichols, Helen M. Wallace and Stephen J. Trueman
Horticulturae 2024, 10(6), 591; https://doi.org/10.3390/horticulturae10060591 - 5 Jun 2024
Cited by 1 | Viewed by 1349
Abstract
The productivity of many tree crops is limited by low yield, partly due to high rates of fruitlet abscission during early fruit development. Early studies suggested that cross-pollinated fruitlets may be selectively retained during fruit development, although paternity testing of fruitlets to test [...] Read more.
The productivity of many tree crops is limited by low yield, partly due to high rates of fruitlet abscission during early fruit development. Early studies suggested that cross-pollinated fruitlets may be selectively retained during fruit development, although paternity testing of fruitlets to test this hypothesis was technically challenging. We used MassARRAY genotyping to determine the effects of pollen parentage on fruitlet retention and fruit quality of Hass avocado. We identified the paternity of abscised and retained fruitlets at 6 and 10 weeks, and mature fruit at 36 weeks, after peak anthesis. We measured the embryo mass, pericarp mass, total mass and nutrient concentrations of fruitlets, and the seed mass, flesh mass, total mass, diameter, length, nutrient concentrations and fatty-acid composition of mature fruit. The percentages of progeny on the tree that were cross-fertilised increased from 4.6% at 6 weeks after peak anthesis to 10.7% at fruit maturity. Only 1.0% of freshly abscised fruitlets on the ground at 10 weeks after peak anthesis were cross-pollinated even though 6.5% of retained fruitlets on the tree were cross-pollinated. At this stage, cross-pollinated fruitlets had similar nutrient concentrations to self-pollinated fruitlets, but they had higher total contents of P, K, Al, Ca, Fe, Mn and Zn due to having greater fruitlet mass. At maturity, cross-pollinated fruit were 6% heavier and had 2% greater diameter than self-pollinated fruit, without significant differences in flesh nutrient concentrations or fatty acid composition. The results demonstrate that Hass avocado trees selectively retain cross-pollinated fruitlets, which are larger than self-pollinated fruitlets and ultimately produce larger mature fruit. Avocado growers can increase fruit size and yield by improving the opportunities for cross-pollination, possibly by closely interplanting type A and type B cultivars and introducing more beehives into orchards. Full article
(This article belongs to the Special Issue Advances in Developmental Biology in Tree Fruit and Nut Crops)
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<p>A dissected Hass avocado fruitlet at 10 weeks after peak anthesis, with E<sub>1</sub> and E<sub>2</sub> (embryo, possibly including endosperm), and M<sub>1</sub> and M<sub>2</sub> (maternal tissue).</p>
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<p>Mass of the (i) embryo or seed, (ii) pericarp or flesh, and (iii) total fruitlet or fruit of self-fertilised vs. cross-fertilised progeny of Hass avocado at (<b>a</b>) 6 weeks, (<b>b</b>) 10 weeks and (<b>c</b>) 36 weeks after peak anthesis. Means (±SE) with different letters within a sample type and time point are significantly different (GLM, <span class="html-italic">p</span> &lt; 0.05, <span class="html-italic">n</span> = 95–325 selfs and <span class="html-italic">n</span> = 13–50 crosses).</p>
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8 pages, 600 KiB  
Communication
In Vitro Assay Using Proboscidea parviflora W. and Phaseolus lunatus L. Plant Extracts to Control Pythium amazonianum
by Yisa María Ochoa Fuentes, Antonio Orozco Plancarte, Ernesto Cerna Chávez and Rocío de Jesús Díaz Aguilar
Microorganisms 2024, 12(6), 1045; https://doi.org/10.3390/microorganisms12061045 - 22 May 2024
Viewed by 805
Abstract
Avocado tree wilt is a disease caused by Phytophthora cinnamomi Rands. Recently, this disease has been associated to Pythium amazonianum, another causal agent. Avocado tree wilt is being currently controlled with synthetic fungicides that kill beneficial microorganisms, polluting the environment and leading [...] Read more.
Avocado tree wilt is a disease caused by Phytophthora cinnamomi Rands. Recently, this disease has been associated to Pythium amazonianum, another causal agent. Avocado tree wilt is being currently controlled with synthetic fungicides that kill beneficial microorganisms, polluting the environment and leading to resistance problems in plant pathogens. The current research work aims to provide alternative management using extracts from Proboscidea parviflora W. and Phaseolus lunatus L. to control the development of mycelia in P. amazonianum in vitro. Raw extracts were prepared at UAAAN Toxicology Laboratory, determining the inhibition percentages, inhibition concentrations and inhibition lethal times. Several concentrations of the plant extracts were evaluated using the poisoned medium methodology, showing that both extracts control and inhibit mycelial development, in particular P. lutatus, which inhibits mycelial growth at concentrations lower than 80 mg/L, being lower than P. parviflora extracts. These extracts are promising candidates for excellent control of Pythium amazonianum. Full article
(This article belongs to the Special Issue Plant Pathogenic Fungi: Genetics and Genomics)
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<p>Probit regression depicting the inhibition of <span class="html-italic">Pythium amazonianum</span> mycelial growth under the effects of <span class="html-italic">Proboscidea parviflora</span> W. and <span class="html-italic">Phaseolus lunatus</span> L. Inhibition vs. Concentration.</p>
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4 pages, 207 KiB  
Editorial
Special Issue “Pretreatment and Bioconversion of Crop Residues II”—Introduction to the Collection
by Carlos Martín and Eulogio Castro
Agronomy 2024, 14(5), 962; https://doi.org/10.3390/agronomy14050962 - 3 May 2024
Cited by 1 | Viewed by 1337
Abstract
Bioconversion in biorefineries is a way to valorize residues from agriculture and food processing. Pretreatment is an important step in the bioconversion of lignocellulosic materials, including crop residues. This Special Issue includes nine articles on several pretreatment and bioconversion approaches applied to different [...] Read more.
Bioconversion in biorefineries is a way to valorize residues from agriculture and food processing. Pretreatment is an important step in the bioconversion of lignocellulosic materials, including crop residues. This Special Issue includes nine articles on several pretreatment and bioconversion approaches applied to different agricultural residues and food-processing by-products. The materials addressed in this collection cover straw from wheat, rye, and miscanthus, olive tree pruning residue, almond shells and husks, avocado waste, sweet sorghum bagasse, soybean meal, and residues of non-edible oilseeds. Full article
(This article belongs to the Special Issue Pretreatment and Bioconversion of Crop Residues II)
18 pages, 3760 KiB  
Article
A First Omics Data Integration Approach in Hass Avocados to Evaluate Rootstock–Scion Interactions: From Aerial and Root Plant Growth to Fruit Development
by Gerardo Núñez-Lillo, Excequel Ponce, Clemens P. Beyer, Juan E. Álvaro, Claudio Meneses and Romina Pedreschi
Plants 2024, 13(5), 603; https://doi.org/10.3390/plants13050603 - 22 Feb 2024
Cited by 1 | Viewed by 1299
Abstract
Grafting, the careful selection of rootstocks and scions, has played a crucial role maintaining Chilean avocado fruit quality standards in a scenario in which climate change and drought-related issues have considerably decreased avocado fruit production in the last fifteen years. The historical use [...] Read more.
Grafting, the careful selection of rootstocks and scions, has played a crucial role maintaining Chilean avocado fruit quality standards in a scenario in which climate change and drought-related issues have considerably decreased avocado fruit production in the last fifteen years. The historical use of seedling rootstocks in Chile has experienced a recent shift towards clonal rootstocks, driven by the potential to produce more consistent and predictable crops. This research aims to compare Hass avocado plants grafted on Mexicola seedling and Dusa® clonal rootstocks in a soilless and protected system using (i) a differential expression analysis of root and leaf samples and (ii) a fruit transcriptomic and metabolomic integration analysis to improve our understanding of rootstock–scion interaction and its impact on avocado tree performance and fruit quality. The results demonstrated that no significant transcriptomic and metabolomic differences were identified at fruit level in the ready-to-eat (RTE) stage for Hass avocado fruit from both rootstocks. However, Hass avocados grafted on the clonal rootstock showed greater aerial growth and slightly increased fruit size than the seedling rootstock due to the enrichment of cell wall-remodeling genes as revealed in leaves and fruit at harvest stage. Full article
(This article belongs to the Section Horticultural Science and Ornamental Plants)
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<p>Phenotyping of Hass avocado trees grafted on seedling (Mexicola) and clonal (Dusa<sup>®</sup>) rootstocks during May 2021 and September 2022. Grey highlighted sections correspond to root and leaf sampling periods at full bloom and harvest stages.</p>
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<p>Differential expression analysis between Hass avocado trees grafted on seedling (Mexicola) and clonal (Dusa<sup>®</sup>) rootstocks. (<b>A</b>) Partial least square discriminant analysis (PLS-DA) for root (left side) and leaf (right side) samples. (<b>B</b>) Red-blue color scale heatmap representing the differentially expressed genes between Mexicola and Dusa<sup>®</sup> samples at least in one condition. Each column represents the average expression value of three biological replicates scaled considering the mean centered divided by standard deviation (z-score). (<b>C</b>,<b>D</b>) Volcano plots representing the differentially expressed genes between Mexicola and Dusa<sup>®</sup> root samples at bloom and harvest stages, respectively. (<b>E</b>) Volcano plot representing the differentially expressed genes between Mexicola and Dusa<sup>®</sup> leaf samples at bloom stage.</p>
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<p>Gene ontology analysis using differentially expressed genes between Hass avocado trees grafted on Mexicola and Dusa<sup>®</sup> rootstocks. (<b>A</b>) Venn diagram comparing the number of DEGs between studied comparisons. (<b>B</b>) Gene ontology analysis using the root DEG list. (<b>C</b>) Gene ontology analysis using the leaf DEG list.</p>
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<p>Transcriptomic integration analysis between root and leaf samples of avocado trees cv. Hass grafted on two types of rootstocks, Mexicola (seedling) and Dusa<sup>®</sup> (clonal). (<b>A</b>) Sparse partial least square discriminant analysis (sPLS-DA) with selected variables for root (upper side) and leaf (lower side) transcriptomic datasets. (<b>B</b>) Scatterplot from plotDiablo displaying the first (upper diagonal) and second (lower diagonal) sPLS-DA variates with Pearson correlations between root and leaf transcriptomic datasets. (<b>C</b>) CircosPlot showing the root and leaf selected transcripts for variate 1. The expression values of each transcript are plotted on the outside part of the circosPlot. Positive and negative correlations between transcriptomic datasets are represented by green and red lines.</p>
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<p>Transcriptomic and metabolomic analysis comparing Hass avocado fruit grown on seedling and clonal rootstocks. (<b>A</b>) Partial least square discriminant analysis (PLS-DA) for fruit transcriptomics (upper side) and fruit metabolomics (lower side). (<b>B</b>) Differentially expressed genes at the harvest stage are represented in a volcano plot. (<b>C</b>) Differentially expressed genes are plotted in a red-blue color scale heatmap. Expression values were scaled considering the mean-centered divided by the standard deviation. (<b>D</b>) Differentially abundant metabolites at the harvest stage are represented in a volcano plot. (<b>E</b>) Top 35 most significant metabolites are plotted in an orange-purple color scale heatmap. Abundance values were scaled considering the mean-centered divided by the standard deviation.</p>
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<p>Multiomics integration analysis between Hass avocado fruit grown on seedling and clonal rootstocks. (<b>A</b>) Sparse partial least square discriminant analysis (sPLS-DA) with the contribution of transcriptomic (upper side) and metabolomic (lower side) datasets. (<b>B</b>) Scatterplot from plotDiablo displaying the first (upper diagonal) and second (lower diagonal) variates with Pearson correlations between omics datasets. Numbers close to 1.0 represent a high correlation between datasets. (<b>C</b>) Selected variables obtained with the sPLS-DA are plotted in a circosPlot. Transcriptomic and metabolomic datasets are characterized by blue and purple boxes, respectively. Bold metabolite/gene names represent candidate variables identified by both single- and multiomics analyses.</p>
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23 pages, 10059 KiB  
Article
Biological Control and Cross Infections of the Neofusicoccum spp. Causing Mango Postharvest Rots in Spain
by Lucía Guirado-Manzano, Sandra Tienda, José Antonio Gutiérrez-Barranquero, Antonio de Vicente, Francisco M. Cazorla and Eva Arrebola
Horticulturae 2024, 10(2), 166; https://doi.org/10.3390/horticulturae10020166 - 11 Feb 2024
Viewed by 1771
Abstract
Mango is one of the main subtropical crops growing in southern Spain. Spanish mango fruit production can be efficiently transported to the rest of Europe, and these mangoes are very appreciated for their quality and flavour. However, postharvest rots have been detected in [...] Read more.
Mango is one of the main subtropical crops growing in southern Spain. Spanish mango fruit production can be efficiently transported to the rest of Europe, and these mangoes are very appreciated for their quality and flavour. However, postharvest rots have been detected in stored mango fruits, making their commercialization difficult. The causal agents associated with such rot symptoms have been isolated and identified. Because the mango crops used to share the same growing area with avocado crops, fungal presence on surrounding asymptomatic avocado fruits was also analysed to detect potential cross infections. Artificial inoculation with Neofusicoccum parvum and N. mediterraneum was able to reproduce rot symptoms in mango but was also able to induce rots in avocado fruits. To approach a biological control strategy against these rot-producing fungi, two very well-known antagonistic biocontrol bacteria, Pseudomonas chlororaphis PCL1606, and Bacillus velezensis UMAF6639, were tested. The obtained results revealed that both bacteria can control the fungal rots on stored mango and avocado fruits under controlled conditions. Additionally, the strain B. velezensis UMAF6639 showed the ability to persist on the fruit surface of adult commercial trees in experiments under open field conditions, helping to prevent the appearance of these postharvest diseases. Full article
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<p>Inoculation procedure for rot symptom development in preliminary assays for symptom establishment. (<b>A</b>,<b>F</b>) Drawing that represents the strategies used in the inoculation of fungal pathogens in mango (<b>A</b>) and avocado (<b>F</b>). (<b>B</b>,<b>G</b>) Inoculated fruits ready for incubation at room temperature for seven days. (<b>C</b>) Mango fruit recently inoculated with fungal suspension. (<b>D</b>) Superficial rot symptoms were observed on mango skin after seven days of incubation at room temperature. (<b>E</b>) Categories of severity used in mango artificial infection assays. Category 0 means no symptoms, Category 1 includes a necrotic area less than 0.5 cm in diameter, Category 2 includes a necrotic area from 0.5 to 2 cm in diameter, and Category 3 includes a necrotic area more than 2 cm in diameter. (<b>H</b>) Superficial rot symptoms observed on avocado skin after eight days of incubation at room temperature at the three different inoculation points. (<b>I</b>) Categories of severity used in avocado artificial inoculated assays. Category 0 means no symptoms, Category 1 includes less than 25% of the necrotic area, Category 2 includes 25% of the necrotic area, and Category 3 includes more than 25% of the necrotic area.</p>
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<p>Radar representation of the percentage of growth (0–100%) of undetermined <span class="html-italic">Neofusicoccum</span> spp., <span class="html-italic">Neofusicoccum parvum</span> (Np), and <span class="html-italic">Neofusicoccum mediterraneum</span> (Nm), isolated in the current study against antagonist bacteria <span class="html-italic">Bacillus velezensis</span> UMAF6639 fermented in red and <span class="html-italic">Pseudomonas chlororaphis</span> PCL1606 in green. Values with letters show statistical significance in comparison with the control without bacteria. Values with different letters show significant differences between <span class="html-italic">Bacillus</span> and <span class="html-italic">Pseudomonas</span> levels of action relative to the control. (<b>A</b>) Percentage of growth of isolates by the dual technique for the antagonism test. (<b>B</b>) Percentage of growth of isolates incubated in front of antagonist bacteria for volatile organic compound analysis. The statistical analysis was conducted by one-way ANOVA using SPSS software 11.0.</p>
Full article ">Figure 2 Cont.
<p>Radar representation of the percentage of growth (0–100%) of undetermined <span class="html-italic">Neofusicoccum</span> spp., <span class="html-italic">Neofusicoccum parvum</span> (Np), and <span class="html-italic">Neofusicoccum mediterraneum</span> (Nm), isolated in the current study against antagonist bacteria <span class="html-italic">Bacillus velezensis</span> UMAF6639 fermented in red and <span class="html-italic">Pseudomonas chlororaphis</span> PCL1606 in green. Values with letters show statistical significance in comparison with the control without bacteria. Values with different letters show significant differences between <span class="html-italic">Bacillus</span> and <span class="html-italic">Pseudomonas</span> levels of action relative to the control. (<b>A</b>) Percentage of growth of isolates by the dual technique for the antagonism test. (<b>B</b>) Percentage of growth of isolates incubated in front of antagonist bacteria for volatile organic compound analysis. The statistical analysis was conducted by one-way ANOVA using SPSS software 11.0.</p>
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<p>Percentage of rot incidence in the artificial infection experiment in mango and avocado fruits treated with antagonist bacteria <span class="html-italic">Pseudomonas chlororaphis</span> PCL1606 (green) and fermented <span class="html-italic">Bacillus velezensis</span> UMAF6639 (red). Sterile water with 1 mL L<sup>−1</sup> of adjuvant was used as a treatment control (blue). The cumulative incidence is analysed in preventive and curative treatment applications. Significant differences in the treatment compared to the control are marked with asterisks. The statistical analysis was conducted by Student’s <span class="html-italic">t</span>-test using SPSS software 11.0.</p>
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<p>Severity symptom evolution on mango variety Osteen for eight days caused by three different fungi, <span class="html-italic">Neofusicoccum parvum</span> (UMAF M1937 and UMAF M1302) and <span class="html-italic">N. mediterraneum</span> (UMAF M1938). The symptom severity was analysed in fruits treated with <span class="html-italic">Pseudomonas chlororaphis</span> PCL1606 at a dose 10<sup>6</sup> CFU mL<sup>−1</sup> with an adjuvant of 1 mL L<sup>−1</sup> (in green) and fermented <span class="html-italic">Bacillus velezensis</span> UMAF6639 at a dose 10<sup>6</sup> CFU mL<sup>−1</sup> with an adjuvant of 1 mL L<sup>−1</sup> (in red). Sterile water with an adjuvant of 1 mL L<sup>−1</sup> was used as control (in blue). The treatments were applied in curative and preventive modes for analysis. The percentage of inoculated points belonging to each category of severity in preventive and curative treatment are represented by colour intensity.</p>
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<p><span class="html-italic">Pseudomonas chlororaphis</span> PCL1606 (green scale) and <span class="html-italic">Bacillus velezensis</span> UMAF6639 fermented (vegetative cells in red, spores in orange) population counts on mango and avocado fruits inoculated with pathogen fungus and sterile water with adjuvant (1 mL L<sup>−1</sup>) as a control. <span class="html-italic">Neofusicoccum parvum</span> (Np) UMAF M1937 (■), fungal inoculated in mango and avocado, Np UMAF M1302 (▼) only in mango and Np UMAF M1964 (▽) only in avocado. <span class="html-italic">N. mediterraneum</span> (Nm) UMAF M1938 (▲) only in mango and UMAF M1960 (Δ) only in avocado. The control is represented in black (●).</p>
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<p>Bacterial counts obtained from fruits treated with preventive application in the field before harvest. Population of <span class="html-italic">Pseudomonas chlororaphis</span> PCL1606 (green) and <span class="html-italic">Bacillus velezensis</span> UMAF6639 (vegetative cells in red and spores in orange) after one day and fifteen days postinoculation (dpi) in mango fruits, and after one, eight, fifteen, and twenty-two days postinoculation (dpi) in avocado fruits.</p>
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17 pages, 2027 KiB  
Article
Inadequate Pollination Is a Key Factor Determining Low Fruit-to-Flower Ratios in Avocado
by María L. Alcaraz and Jose I. Hormaza
Horticulturae 2024, 10(2), 140; https://doi.org/10.3390/horticulturae10020140 - 31 Jan 2024
Cited by 1 | Viewed by 1499
Abstract
Avocado is an evergreen tree that exhibits protogynous dichogamy and displays a massive flower production, characterized by a high abscission of unfertilized flowers and developing fruitlets, ultimately leading to a low final fruit set. A common practice to improve avocado pollination involves introducing [...] Read more.
Avocado is an evergreen tree that exhibits protogynous dichogamy and displays a massive flower production, characterized by a high abscission of unfertilized flowers and developing fruitlets, ultimately leading to a low final fruit set. A common practice to improve avocado pollination involves introducing honey bee (Apis mellifera L.) hives during the flowering season. To evaluate the extent of inadequate pollination in avocado, the effect of different beehive densities on the percentage of flowers receiving pollen during the female flower stage was examined for seven years in an experimental orchard located in Southern Spain. A total of 17,288 flowers were observed under the microscope for this purpose. Additionally, pollen deposition was evaluated in five “Hass” avocado commercial orchards under different management strategies situated in the Malaga province (3960 flowers). The results obtained reveal that the percentage of flowers with pollen at the end of the female stage ranged from 2.85 (0.13% fruits retained at the end of June) in orchards without honey bee hives to 4.34 (0.11% fruits retained) in orchards in which 10 beehives per ha were placed. This percentage increased significantly to 13.79 after introducing 24 honey beehives per ha (0.21% fruits retained). Furthermore, the percentage of pollinated flowers in the commercial orchards remained below 15% even in those orchards in which pollen donors and honey bee hives were present. Thus, insufficient pollination could be considered as a primary limiting factor in avocado production under Mediterranean climates. Enhancing pollinator diversity and increasing their numbers could be a viable strategy to improve the percentage of avocado flowers receiving pollen during the female stage. Full article
(This article belongs to the Section Fruit Production Systems)
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Figure 1

Figure 1
<p>Stigmas and upper part of the style from avocado pistils collected in the field when the flowers started to open at the male phase. (<b>a</b>) Stigma with some pollen grains adhered and germinated. (<b>b</b>) Stigma that did not receive any pollen grains. Stain: aniline blue. Scale bars = 500 µm.</p>
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<p>Percentage of flowers of ”Hass” avocado receiving pollen during the female phase of the flowering cycle at different distances from honey bee hives (Rows). Each row represents 8 m. Data represent the means + SE. No significant differences were found among rows (GLM, <span class="html-italic">p</span> &gt; 0.05).</p>
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<p>Mean + SE of mean, minimum, and maximum temperatures over the flowering period in those years in which variation in pollen deposition during the four weeks of the flowering period was evaluated (2018–2021).</p>
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<p>Percentage of flowers receiving pollen during the female phase in monovarietal and mixed avocado orchards. Data represent the mean + SE. Means with different letters indicate the presence of significant differences (Student’s <span class="html-italic">t</span>-test <span class="html-italic">p</span> &lt; 0.05).</p>
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<p>Percentage of “Hass” fruits derived from crossing with the different pollen donors present in the orchard. The letter in parentheses indicates the floral group. Means with different letters indicate the presence of significant differences (chi-square test, <span class="html-italic">p</span> &lt; 0.05).</p>
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<p>Percentage of flowers receiving pollen grains in their stigmas and pollen load sizes. (<b>a</b>) Percentage of flowers with pollen in their stigmas in five “Hass” avocado commercial orchards. Means (+SE) followed by different letters indicate that they are significantly different (GLM analyses followed by Tukey’s HSD test, <span class="html-italic">p</span> &lt; 0.05). (<b>b</b>) Histogram showing the percentage of avocado flowers in each range of pollen load sizes in each of the five “Hass” avocado commercial orchards evaluated in this study.</p>
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<p>Percentage of cross-fertilization with different pollen donors and close-pollinated “Hass” fruits in five avocado commercial orchards. Fruits derived from fertilization between flowers of the same tree or different trees of the same cultivar are included in close pollinated group. Means of percentage of cross-fertilization (+SE) followed by different letters indicate that they are significantly different among orchards (GLM analyses followed by Tukey’s HSD test, <span class="html-italic">p</span> &lt; 0.05). H = “Hass”, B = “Bacon”, F = “Fuerte”.</p>
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<p>Percentage of flowers with pollen at the different periods of collection in five “Hass” avocado commercial orchards. Bars (mean + SE) with different letters show significant differences at <span class="html-italic">p</span> &lt; 0.05 (GLM).</p>
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